SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/104180
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8821 O_BomoIG14177_complete:A_BomoIG_DN32655_c4_g3_i17
173bp
 whirlin_[Bombyx_mori]
GO:0001895 P retina homeostasis
GO:0001917 C photoreceptor inner segment
GO:0002141 C stereocilia ankle link
GO:0002142 C stereocilia ankle link complex
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005884 C actin filament
GO:0005929 C cilium
GO:0007605 P sensory perception of sound
GO:0010628 P positive regulation of gene expression
GO:0021694 P cerebellar Purkinje cell layer formation
GO:0030426 C growth cone
GO:0032391 C photoreceptor connecting cilium
GO:0032420 C stereocilium
GO:0032421 C stereocilium bundle
GO:0032426 C stereocilium tip
GO:0036064 C ciliary basal body
GO:0042803 F protein homodimerization activity
GO:0042995 C cell projection
GO:0045184 P establishment of protein localization
GO:0046982 F protein heterodimerization activity
GO:0050953 P sensory perception of light stimulus
GO:0060122 P inner ear receptor cell stereocilium organization
GO:1990075 C periciliary membrane compartment
GO:1990227 P paranodal junction maintenance
GO:1990696 C USH2 complex
8822 O_BomoIG14178_5prime_partial:A_BomoIG_DN32655_c4_g3_i18
152bp
 whirlin_[Bombyx_mori]
GO:0001895 P retina homeostasis
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007605 P sensory perception of sound
GO:0030426 C growth cone
GO:0032420 C stereocilium
GO:0042995 C cell projection
GO:0050953 P sensory perception of light stimulus
GO:0060122 P inner ear receptor cell stereocilium organization
8823 O_BomoIG14179_complete:A_BomoIG_DN32655_c4_g6_i10
362bp
 cathepsin_D_precursor_[Bombyx_mori]
GO:0004190 F aspartic-type endopeptidase activity
GO:0005764 C lysosome
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0016787 F hydrolase activity
8824 O_BomoIG1417_complete:A_BomoIG_DN30205_c1_g5_i1
103bp
8825 O_BomoIG14180_complete:A_BomoIG_DN32655_c4_g6_i10
128bp
8826 O_BomoIG14181_complete:A_BomoIG_DN32655_c4_g6_i11
385bp
 cathepsin_D_precursor_[Bombyx_mori]
GO:0004190 F aspartic-type endopeptidase activity
GO:0005764 C lysosome
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0016787 F hydrolase activity
8827 O_BomoIG14182_complete:A_BomoIG_DN32655_c4_g6_i11
128bp
8828 O_BomoIG14183_complete:A_BomoIG_DN32655_c4_g6_i11
112bp
8829 O_BomoIG14184_complete:A_BomoIG_DN32655_c4_g3_i20
787bp
 whirlin_[Bombyx_mori]
GO:0001895 P retina homeostasis
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007605 P sensory perception of sound
GO:0030426 C growth cone
GO:0032420 C stereocilium
GO:0042995 C cell projection
GO:0050953 P sensory perception of light stimulus
GO:0060122 P inner ear receptor cell stereocilium organization
8830 O_BomoIG14185_5prime_partial:A_BomoIG_DN32655_c4_g3_i20
120bp
8831 O_BomoIG14186_complete:A_BomoIG_DN32655_c4_g3_i20
103bp
8832 O_BomoIG14187_complete:A_BomoIG_DN32655_c4_g3_i21
825bp
 whirlin_[Bombyx_mori]
GO:0001895 P retina homeostasis
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007605 P sensory perception of sound
GO:0030426 C growth cone
GO:0032420 C stereocilium
GO:0042995 C cell projection
GO:0050953 P sensory perception of light stimulus
GO:0060122 P inner ear receptor cell stereocilium organization
8833 O_BomoIG14188_3prime_partial:A_BomoIG_DN32655_c4_g3_i21
108bp
8834 O_BomoIG14189_complete:A_BomoIG_DN32655_c4_g6_i12
385bp
 cathepsin_D_precursor_[Bombyx_mori]
GO:0004190 F aspartic-type endopeptidase activity
GO:0005764 C lysosome
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0016787 F hydrolase activity
8835 O_BomoIG1418_3prime_partial:A_BomoIG_DN30205_c1_g3_i4
200bp
 hsp70-Hsp90_organizing_protein_3_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0051131 P chaperone-mediated protein complex assembly
GO:0051879 F Hsp90 protein binding
GO:0070678 F preprotein binding
8836 O_BomoIG14190_complete:A_BomoIG_DN32655_c4_g6_i12
128bp
8837 O_BomoIG14191_complete:A_BomoIG_DN32655_c4_g6_i13
209bp
 cathepsin_D_precursor_[Bombyx_mori]
GO:0004190 F aspartic-type endopeptidase activity
GO:0005764 C lysosome
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0016787 F hydrolase activity
8838 O_BomoIG14192_complete:A_BomoIG_DN32655_c4_g3_i23
591bp
 whirlin_[Bombyx_mori]
GO:0001895 P retina homeostasis
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007605 P sensory perception of sound
GO:0030426 C growth cone
GO:0032420 C stereocilium
GO:0042995 C cell projection
GO:0050953 P sensory perception of light stimulus
GO:0060122 P inner ear receptor cell stereocilium organization
8839 O_BomoIG14193_complete:A_BomoIG_DN32655_c4_g3_i23
159bp
 whirlin_[Bombyx_mori]
GO:0001895 P retina homeostasis
GO:0001917 C photoreceptor inner segment
GO:0002141 C stereocilia ankle link
GO:0002142 C stereocilia ankle link complex
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005884 C actin filament
GO:0005929 C cilium
GO:0007605 P sensory perception of sound
GO:0010628 P positive regulation of gene expression
GO:0021694 P cerebellar Purkinje cell layer formation
GO:0030426 C growth cone
GO:0032391 C photoreceptor connecting cilium
GO:0032420 C stereocilium
GO:0032421 C stereocilium bundle
GO:0032426 C stereocilium tip
GO:0036064 C ciliary basal body
GO:0042803 F protein homodimerization activity
GO:0042995 C cell projection
GO:0045184 P establishment of protein localization
GO:0046982 F protein heterodimerization activity
GO:0050953 P sensory perception of light stimulus
GO:0060122 P inner ear receptor cell stereocilium organization
GO:1990075 C periciliary membrane compartment
GO:1990227 P paranodal junction maintenance
GO:1990696 C USH2 complex
8840 O_BomoIG14194_3prime_partial:A_BomoIG_DN32655_c4_g3_i23
108bp
8841 O_BomoIG14195_complete:A_BomoIG_DN32655_c4_g3_i24
811bp
 whirlin_[Bombyx_mori]
GO:0001895 P retina homeostasis
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007605 P sensory perception of sound
GO:0030426 C growth cone
GO:0032420 C stereocilium
GO:0042995 C cell projection
GO:0050953 P sensory perception of light stimulus
GO:0060122 P inner ear receptor cell stereocilium organization
8842 O_BomoIG14196_3prime_partial:A_BomoIG_DN32655_c4_g3_i24
108bp
8843 O_BomoIG14197_5prime_partial:A_BomoIG_DN32651_c7_g1_i1
109bp
8844 O_BomoIG14198_3prime_partial:A_BomoIG_DN32651_c7_g1_i1
108bp
 histone-lysine_N-methyltransferase_SETD2_isoform_X3_[Bombyx_mori]
8845 O_BomoIG14199_3prime_partial:A_BomoIG_DN32651_c7_g1_i2
1466bp
 histone-lysine_N-methyltransferase_SETD2_isoform_X2_[Bombyx_mori]
GO:0002168 P instar larval development
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0010452 P histone H3-K36 methylation
GO:0016568 P chromatin organization
GO:0016571 P histone methylation
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035076 P ecdysone receptor-mediated signaling pathway
GO:0035220 P wing disc development
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051219 F phosphoprotein binding
8846 O_BomoIG1419_complete:A_BomoIG_DN30205_c1_g1_i5
371bp
 neuroligin-4,_Y-linked_isoform_X1_[Bombyx_mori]
GO:0002087 P regulation of respiratory gaseous exchange by nervous system process
GO:0004872 F signaling receptor activity
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006898 P receptor-mediated endocytosis
GO:0007155 P cell adhesion
GO:0007158 P neuron cell-cell adhesion
GO:0007416 P synapse assembly
GO:0007612 P learning
GO:0008542 P visual learning
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030139 C endocytic vesicle
GO:0030425 C dendrite
GO:0030534 P adult behavior
GO:0035176 P social behavior
GO:0042043 F neurexin family protein binding
GO:0043025 C neuronal cell body
GO:0045202 C synapse
GO:0048675 P axon extension
GO:0048709 P oligodendrocyte differentiation
GO:0050804 P modulation of chemical synaptic transmission
GO:0050808 P synapse organization
GO:0050839 F cell adhesion molecule binding
GO:0051965 P positive regulation of synapse assembly
GO:0051966 P regulation of synaptic transmission, glutamatergic
GO:0051968 P positive regulation of synaptic transmission, glutamatergic
GO:0052689 F carboxylic ester hydrolase activity
GO:0060024 P rhythmic synaptic transmission
GO:0060076 C excitatory synapse
GO:0060077 C inhibitory synapse
GO:0060079 P excitatory postsynaptic potential
GO:0060080 P inhibitory postsynaptic potential
GO:0060291 P long-term synaptic potentiation
GO:0060999 P positive regulation of dendritic spine development
GO:0061001 P regulation of dendritic spine morphogenesis
GO:0061002 P negative regulation of dendritic spine morphogenesis
GO:0071625 P vocalization behavior
GO:0090394 P negative regulation of excitatory postsynaptic potential
GO:0097104 P postsynaptic membrane assembly
GO:0097105 P presynaptic membrane assembly
GO:0097110 F scaffold protein binding
GO:0097151 P positive regulation of inhibitory postsynaptic potential
GO:0098794 C postsynapse
GO:1900271 P regulation of long-term synaptic potentiation
GO:1902474 P positive regulation of protein localization to synapse
GO:2000310 P regulation of NMDA receptor activity
GO:2000311 P regulation of AMPA receptor activity
GO:2000331 P regulation of terminal button organization
GO:2000463 P positive regulation of excitatory postsynaptic potential
GO:2000809 P positive regulation of synaptic vesicle clustering
GO:2000969 P positive regulation of AMPA receptor activity
8847 O_BomoIG141_5prime_partial:A_BomoIG_DN30265_c4_g1_i2
107bp
 HMG_box-containing_protein_4_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0007275 P multicellular organism development
GO:0016055 P Wnt signaling pathway
GO:0019901 F protein kinase binding
GO:0030178 P negative regulation of Wnt signaling pathway
8848 O_BomoIG14200_complete:A_BomoIG_DN32651_c7_g1_i2
139bp
8849 O_BomoIG14201_5prime_partial:A_BomoIG_DN32651_c7_g1_i2
109bp
8850 O_BomoIG14202_complete:A_BomoIG_DN32651_c7_g1_i2
108bp
previous next from show/104180

- SilkBase 1999-2023 -