SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/104180
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8401 O_BomoIG1379_complete:A_BomoIG_DN30253_c4_g4_i3
243bp
 protein_halfway_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0035073 P pupariation
GO:0035075 P response to ecdysone
GO:0035556 P intracellular signal transduction
8402 O_BomoIG137_complete:A_BomoIG_DN30288_c4_g1_i6
114bp
8403 O_BomoIG13800_internal:A_BomoIG_DN29670_c0_g1_i4
240bp
 dedicator_of_cytokinesis_protein_3_isoform_X1_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0007264 P small GTPase mediated signal transduction
GO:0016020 C membrane
GO:0017124 F SH3 domain binding
GO:0030165 F PDZ domain binding
GO:0030971 F receptor tyrosine kinase binding
GO:0032420 C stereocilium
GO:0032421 C stereocilium bundle
GO:0042995 C cell projection
GO:0043547 P positive regulation of GTPase activity
GO:0048365 F small GTPase binding
GO:0060326 P cell chemotaxis
GO:1904694 P negative regulation of vascular associated smooth muscle contraction
GO:1904754 P positive regulation of vascular associated smooth muscle cell migration
8404 O_BomoIG13801_5prime_partial:A_BomoIG_DN29670_c0_g1_i4
138bp
8405 O_BomoIG13802_5prime_partial:A_BomoIG_DN29670_c0_g1_i4
123bp
8406 O_BomoIG13803_5prime_partial:A_BomoIG_DN29670_c0_g1_i5
472bp
 dedicator_of_cytokinesis_protein_3_isoform_X1_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0007264 P small GTPase mediated signal transduction
GO:0016020 C membrane
GO:0017124 F SH3 domain binding
GO:0030165 F PDZ domain binding
GO:0030971 F receptor tyrosine kinase binding
GO:0032420 C stereocilium
GO:0032421 C stereocilium bundle
GO:0042995 C cell projection
GO:0043547 P positive regulation of GTPase activity
GO:0048365 F small GTPase binding
GO:0060326 P cell chemotaxis
GO:1904694 P negative regulation of vascular associated smooth muscle contraction
GO:1904754 P positive regulation of vascular associated smooth muscle cell migration
8407 O_BomoIG13804_5prime_partial:A_BomoIG_DN29670_c0_g1_i6
466bp
 dedicator_of_cytokinesis_protein_3_isoform_X2_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0007264 P small GTPase mediated signal transduction
GO:0016020 C membrane
GO:0017124 F SH3 domain binding
GO:0030165 F PDZ domain binding
GO:0030971 F receptor tyrosine kinase binding
GO:0032420 C stereocilium
GO:0032421 C stereocilium bundle
GO:0042995 C cell projection
GO:0043547 P positive regulation of GTPase activity
GO:0048365 F small GTPase binding
GO:0060326 P cell chemotaxis
GO:1904694 P negative regulation of vascular associated smooth muscle contraction
GO:1904754 P positive regulation of vascular associated smooth muscle cell migration
8408 O_BomoIG13805_complete:A_BomoIG_DN29682_c0_g1_i1
421bp
 autophagy-related_protein_13_homolog_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000407 C phagophore assembly site
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006914 P autophagy
GO:0010506 P regulation of autophagy
GO:0019887 F protein kinase regulator activity
GO:0019901 F protein kinase binding
GO:0032147 P activation of protein kinase activity
GO:0035096 P larval midgut cell programmed cell death
GO:0045850 P positive regulation of nurse cell apoptotic process
GO:1990316 C Atg1/ULK1 kinase complex
8409 O_BomoIG13806_complete:A_BomoIG_DN29682_c0_g1_i1
169bp
 MIP18_family_protein_CG30152_[Helicoverpa_armigera]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005876 C spindle microtubule
GO:0007059 P chromosome segregation
GO:0016226 P iron-sulfur cluster assembly
GO:0098813 P nuclear chromosome segregation
8410 O_BomoIG13807_complete:A_BomoIG_DN29682_c0_g1_i2
421bp
 autophagy-related_protein_13_homolog_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000407 C phagophore assembly site
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006914 P autophagy
GO:0010506 P regulation of autophagy
GO:0019887 F protein kinase regulator activity
GO:0019901 F protein kinase binding
GO:0032147 P activation of protein kinase activity
GO:0035096 P larval midgut cell programmed cell death
GO:0045850 P positive regulation of nurse cell apoptotic process
GO:1990316 C Atg1/ULK1 kinase complex
8411 O_BomoIG13808_complete:A_BomoIG_DN29636_c1_g1_i1
443bp
 equilibrative_nucleoside_transporter_4_[Bombyx_mori]
GO:0005337 F nucleoside transmembrane transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008504 F monoamine transmembrane transporter activity
GO:0015844 P monoamine transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0055085 P transmembrane transport
GO:1901642 P nucleoside transmembrane transport
8412 O_BomoIG13809_complete:A_BomoIG_DN29636_c1_g1_i1
119bp
8413 O_BomoIG1380_complete:A_BomoIG_DN30253_c4_g4_i3
145bp
8414 O_BomoIG13810_complete:A_BomoIG_DN29636_c1_g1_i2
275bp
 equilibrative_nucleoside_transporter_4_[Bombyx_mori]
GO:0005337 F nucleoside transmembrane transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008504 F monoamine transmembrane transporter activity
GO:0015844 P monoamine transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0055085 P transmembrane transport
GO:1901642 P nucleoside transmembrane transport
8415 O_BomoIG13811_complete:A_BomoIG_DN29636_c1_g1_i3
559bp
 equilibrative_nucleoside_transporter_4_[Bombyx_mori]
GO:0005337 F nucleoside transmembrane transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008504 F monoamine transmembrane transporter activity
GO:0015844 P monoamine transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0055085 P transmembrane transport
GO:1901642 P nucleoside transmembrane transport
8416 O_BomoIG13812_complete:A_BomoIG_DN29636_c1_g1_i3
119bp
8417 O_BomoIG13813_5prime_partial:A_BomoIG_DN29646_c0_g1_i1
234bp
 calexcitin-1_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0046872 F metal ion binding
8418 O_BomoIG13814_3prime_partial:A_BomoIG_DN29646_c0_g1_i1
105bp
8419 O_BomoIG13815_complete:A_BomoIG_DN29646_c0_g1_i2
185bp
 calexcitin-1_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0046872 F metal ion binding
8420 O_BomoIG13816_5prime_partial:A_BomoIG_DN29646_c0_g1_i3
234bp
 calexcitin-1_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0046872 F metal ion binding
8421 O_BomoIG13817_3prime_partial:A_BomoIG_DN29646_c0_g1_i3
105bp
8422 O_BomoIG13818_5prime_partial:A_BomoIG_DN29646_c0_g1_i4
139bp
 calexcitin-1_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0046872 F metal ion binding
8423 O_BomoIG13819_3prime_partial:A_BomoIG_DN29646_c0_g1_i4
105bp
8424 O_BomoIG1381_internal:A_BomoIG_DN30238_c0_g2_i1
112bp
 DNA_repair_protein_XRCC1_isoform_X2_[Bombyx_mori]
GO:0000012 P single strand break repair
GO:0003684 F damaged DNA binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006284 P base-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0019899 F enzyme binding
GO:0021766 P hippocampus development
8425 O_BomoIG13820_complete:A_BomoIG_DN29632_c0_g1_i1
202bp
 beta-N-acetylglucosaminidase_1_isoform_X1_[Bombyx_mori]
GO:0000272 P polysaccharide catabolic process
GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004563 F beta-N-acetylhexosaminidase activity
GO:0005575 C cellular_component
GO:0005975 P carbohydrate metabolic process
GO:0006032 P chitin catabolic process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
8426 O_BomoIG13821_5prime_partial:A_BomoIG_DN29632_c0_g1_i1
146bp
8427 O_BomoIG13822_complete:A_BomoIG_DN29632_c0_g1_i2
612bp
 beta-N-acetylglucosaminidase_1_isoform_X1_[Bombyx_mori]
GO:0000272 P polysaccharide catabolic process
GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004563 F beta-N-acetylhexosaminidase activity
GO:0005575 C cellular_component
GO:0005975 P carbohydrate metabolic process
GO:0006032 P chitin catabolic process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
8428 O_BomoIG13823_5prime_partial:A_BomoIG_DN29632_c0_g1_i2
146bp
8429 O_BomoIG13824_complete:A_BomoIG_DN29632_c0_g1_i3
633bp
 beta-N-acetylglucosaminidase_1_isoform_X1_[Bombyx_mori]
GO:0000272 P polysaccharide catabolic process
GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004563 F beta-N-acetylhexosaminidase activity
GO:0005575 C cellular_component
GO:0005975 P carbohydrate metabolic process
GO:0006032 P chitin catabolic process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
8430 O_BomoIG13825_5prime_partial:A_BomoIG_DN29632_c0_g1_i3
146bp
previous next from show/104180

- SilkBase 1999-2023 -