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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8311 O_BomoIG13718_complete:A_BomoIG_DN29660_c0_g1_i1
155bp
8312 O_BomoIG13719_complete:A_BomoIG_DN29660_c0_g1_i1
108bp
8313 O_BomoIG1371_complete:A_BomoIG_DN30253_c4_g3_i6
113bp
8314 O_BomoIG13720_complete:A_BomoIG_DN29660_c0_g1_i2
526bp
 nuclear_RNA_export_factor_1_[Bombyx_mori]
8315 O_BomoIG13721_complete:A_BomoIG_DN29660_c0_g1_i2
168bp
8316 O_BomoIG13722_complete:A_BomoIG_DN29660_c0_g1_i2
158bp
 nuclear_RNA_export_factor_1_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0044822 F RNA binding
GO:0051028 P mRNA transport
8317 O_BomoIG13723_complete:A_BomoIG_DN29660_c0_g1_i2
155bp
8318 O_BomoIG13724_complete:A_BomoIG_DN29660_c0_g1_i3
717bp
 nuclear_RNA_export_factor_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006378 P mRNA polyadenylation
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0007616 P long-term memory
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0030534 P adult behavior
GO:0031965 C nuclear membrane
GO:0044822 F RNA binding
GO:0047485 F protein N-terminus binding
GO:0051028 P mRNA transport
GO:0051168 P nuclear export
8319 O_BomoIG13725_complete:A_BomoIG_DN29660_c0_g1_i3
168bp
8320 O_BomoIG13726_complete:A_BomoIG_DN29660_c0_g1_i3
155bp
8321 O_BomoIG13727_complete:A_BomoIG_DN29660_c0_g1_i3
108bp
8322 O_BomoIG13728_5prime_partial:A_BomoIG_DN29618_c0_g1_i1
148bp
8323 O_BomoIG13729_5prime_partial:A_BomoIG_DN29618_c0_g1_i1
124bp
 splicing_factor_1_[Bombyx_mori]
GO:0000245 P spliceosomal complex assembly
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005840 C ribosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0030238 P male sex determination
GO:0033327 P Leydig cell differentiation
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048662 P negative regulation of smooth muscle cell proliferation
GO:0050810 P regulation of steroid biosynthetic process
GO:1903507 P negative regulation of nucleic acid-templated transcription
8324 O_BomoIG1372_complete:A_BomoIG_DN30253_c4_g3_i7
525bp
 ubiquilin-1_isoform_X1_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005776 C autophagosome
GO:0005783 C endoplasmic reticulum
GO:0005886 C plasma membrane
GO:0006914 P autophagy
GO:0016020 C membrane
GO:0016235 C aggresome
GO:0016241 P regulation of macroautophagy
GO:0019900 F kinase binding
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0031396 P regulation of protein ubiquitination
GO:0031398 P positive regulation of protein ubiquitination
GO:0031410 C cytoplasmic vesicle
GO:0031593 F polyubiquitin modification-dependent protein binding
GO:0034140 P negative regulation of toll-like receptor 3 signaling pathway
GO:0034976 P response to endoplasmic reticulum stress
GO:0035973 P aggrephagy
GO:0042802 F identical protein binding
GO:0043234 C protein-containing complex
GO:0048471 C perinuclear region of cytoplasm
GO:0071456 P cellular response to hypoxia
GO:1901097 P negative regulation of autophagosome maturation
GO:1901340 P negative regulation of store-operated calcium channel activity
GO:1902175 P regulation of oxidative stress-induced intrinsic apoptotic signaling pathway
GO:1903071 P positive regulation of ER-associated ubiquitin-dependent protein catabolic process
GO:2000785 P regulation of autophagosome assembly
8325 O_BomoIG13730_3prime_partial:A_BomoIG_DN29618_c0_g1_i1
114bp
8326 O_BomoIG13731_5prime_partial:A_BomoIG_DN29618_c0_g1_i2
266bp
8327 O_BomoIG13732_3prime_partial:A_BomoIG_DN29618_c0_g1_i2
230bp
 splicing_factor_1_[Bombyx_mori]
GO:0000245 P spliceosomal complex assembly
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005840 C ribosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0030238 P male sex determination
GO:0033327 P Leydig cell differentiation
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048662 P negative regulation of smooth muscle cell proliferation
GO:0050810 P regulation of steroid biosynthetic process
GO:1903507 P negative regulation of nucleic acid-templated transcription
8328 O_BomoIG13733_5prime_partial:A_BomoIG_DN29618_c0_g1_i2
117bp
8329 O_BomoIG13734_5prime_partial:A_BomoIG_DN29618_c0_g1_i2
111bp
 hypothetical_protein_T10_11150,_partial_[Trichinella_papuae]
8330 O_BomoIG13735_5prime_partial:A_BomoIG_DN29618_c0_g1_i2
106bp
 PREDICTED:_branchpoint-bridging_protein_[Plutella_xylostella]
GO:0000245 P spliceosomal complex assembly
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005840 C ribosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0030238 P male sex determination
GO:0033327 P Leydig cell differentiation
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048662 P negative regulation of smooth muscle cell proliferation
GO:0050810 P regulation of steroid biosynthetic process
GO:1903507 P negative regulation of nucleic acid-templated transcription
8331 O_BomoIG13736_5prime_partial:A_BomoIG_DN29618_c0_g1_i3
266bp
8332 O_BomoIG13737_3prime_partial:A_BomoIG_DN29618_c0_g1_i3
230bp
 splicing_factor_1_[Bombyx_mori]
GO:0000245 P spliceosomal complex assembly
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005840 C ribosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0030238 P male sex determination
GO:0033327 P Leydig cell differentiation
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048662 P negative regulation of smooth muscle cell proliferation
GO:0050810 P regulation of steroid biosynthetic process
GO:1903507 P negative regulation of nucleic acid-templated transcription
8333 O_BomoIG13738_5prime_partial:A_BomoIG_DN29618_c0_g1_i3
111bp
 hypothetical_protein_T10_11150,_partial_[Trichinella_papuae]
8334 O_BomoIG13739_5prime_partial:A_BomoIG_DN29618_c0_g1_i4
189bp
8335 O_BomoIG1373_complete:A_BomoIG_DN30253_c4_g3_i7
113bp
8336 O_BomoIG13740_3prime_partial:A_BomoIG_DN29618_c0_g1_i4
179bp
 splicing_factor_1_[Helicoverpa_armigera]
GO:0000245 P spliceosomal complex assembly
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005840 C ribosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0030238 P male sex determination
GO:0033327 P Leydig cell differentiation
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048662 P negative regulation of smooth muscle cell proliferation
GO:0050810 P regulation of steroid biosynthetic process
GO:1903507 P negative regulation of nucleic acid-templated transcription
8337 O_BomoIG13741_5prime_partial:A_BomoIG_DN29618_c0_g1_i4
111bp
 hypothetical_protein_T10_11150,_partial_[Trichinella_papuae]
8338 O_BomoIG13742_internal:A_BomoIG_DN29618_c0_g1_i5
382bp
 splicing_factor_1_[Bombyx_mori]
GO:0000245 P spliceosomal complex assembly
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005840 C ribosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0030238 P male sex determination
GO:0033327 P Leydig cell differentiation
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048662 P negative regulation of smooth muscle cell proliferation
GO:0050810 P regulation of steroid biosynthetic process
GO:1903507 P negative regulation of nucleic acid-templated transcription
8339 O_BomoIG13743_5prime_partial:A_BomoIG_DN29618_c0_g1_i5
266bp
8340 O_BomoIG13744_5prime_partial:A_BomoIG_DN29618_c0_g1_i5
131bp
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