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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8131 O_BomoIG13556_complete:A_BomoIG_DN29685_c0_g1_i5
124bp
8132 O_BomoIG13557_complete:A_BomoIG_DN29685_c0_g1_i7
131bp
 pre-mRNA-splicing_regulator_female-lethal(2)D_[Bombyx_mori]
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0007275 P multicellular organism development
GO:0008380 P RNA splicing
GO:0048024 P regulation of mRNA splicing, via spliceosome
8133 O_BomoIG13558_complete:A_BomoIG_DN29685_c0_g1_i7
124bp
8134 O_BomoIG13559_complete:A_BomoIG_DN29685_c0_g1_i8
124bp
 pre-mRNA-splicing_regulator_female-lethal(2)D_[Bombyx_mori]
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006397 P mRNA processing
GO:0007049 P cell cycle
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0036396 C RNA N6-methyladenosine methyltransferase complex
GO:0042981 P regulation of apoptotic process
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0080009 P mRNA methylation
8135 O_BomoIG1355_complete:A_BomoIG_DN30221_c0_g1_i1
130bp
8136 O_BomoIG13560_complete:A_BomoIG_DN29688_c0_g1_i1
164bp
 slowmo_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0008345 P larval locomotory behavior
GO:0015914 P phospholipid transport
GO:0030154 P cell differentiation
GO:0030432 P peristalsis
GO:0030537 P larval behavior
GO:0030706 P germarium-derived oocyte differentiation
GO:0048477 P oogenesis
GO:1990050 F phosphatidic acid transfer activity
8137 O_BomoIG13561_5prime_partial:A_BomoIG_DN29688_c0_g1_i3
202bp
 slowmo_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0008345 P larval locomotory behavior
GO:0015914 P phospholipid transport
GO:0030154 P cell differentiation
GO:0030432 P peristalsis
GO:0030537 P larval behavior
GO:0030706 P germarium-derived oocyte differentiation
GO:0048477 P oogenesis
GO:1990050 F phosphatidic acid transfer activity
8138 O_BomoIG13562_complete:A_BomoIG_DN29688_c0_g1_i4
164bp
 slowmo_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0008345 P larval locomotory behavior
GO:0015914 P phospholipid transport
GO:0030154 P cell differentiation
GO:0030432 P peristalsis
GO:0030537 P larval behavior
GO:0030706 P germarium-derived oocyte differentiation
GO:0048477 P oogenesis
GO:1990050 F phosphatidic acid transfer activity
8139 O_BomoIG13563_complete:A_BomoIG_DN29688_c0_g1_i5
229bp
 slowmo_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0008345 P larval locomotory behavior
GO:0015914 P phospholipid transport
GO:0030154 P cell differentiation
GO:0030432 P peristalsis
GO:0030537 P larval behavior
GO:0030706 P germarium-derived oocyte differentiation
GO:0048477 P oogenesis
GO:1990050 F phosphatidic acid transfer activity
8140 O_BomoIG13564_complete:A_BomoIG_DN29645_c0_g1_i1
594bp
 nucleolin_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
8141 O_BomoIG13565_internal:A_BomoIG_DN29645_c0_g1_i2
143bp
 nucleolin_[Bombyx_mori]
8142 O_BomoIG13566_complete:A_BomoIG_DN29645_c0_g1_i3
594bp
 nucleolin_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
8143 O_BomoIG13567_complete:A_BomoIG_DN29645_c0_g1_i4
155bp
 nucleolin_[Bombyx_mori]
8144 O_BomoIG13568_complete:A_BomoIG_DN29600_c0_g1_i6
130bp
 H2A_histone_family_member_V_[Bombyx_mori]
GO:0000786 C nucleosome
GO:0000790 C chromatin
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006342 P heterochromatin assembly
GO:0046982 F protein heterodimerization activity
8145 O_BomoIG13569_complete:A_BomoIG_DN29600_c0_g1_i7
130bp
 H2A_histone_family_member_V_[Bombyx_mori]
GO:0000786 C nucleosome
GO:0000790 C chromatin
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006342 P heterochromatin assembly
GO:0046982 F protein heterodimerization activity
8146 O_BomoIG1356_complete:A_BomoIG_DN30221_c0_g1_i2
484bp
 ETS-like_protein_pointed_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001501 P skeletal system development
GO:0001712 P ectodermal cell fate commitment
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007498 P mesoderm development
GO:0030154 P cell differentiation
GO:0035259 F glucocorticoid receptor binding
GO:0043565 F sequence-specific DNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0090009 P primitive streak formation
8147 O_BomoIG13570_complete:A_BomoIG_DN29600_c0_g1_i8
130bp
 H2A_histone_family_member_V_[Bombyx_mori]
GO:0000786 C nucleosome
GO:0000790 C chromatin
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006342 P heterochromatin assembly
GO:0046982 F protein heterodimerization activity
8148 O_BomoIG13571_complete:A_BomoIG_DN29655_c0_g1_i1
325bp
 putative_signal_recognition_particle_54_kDa_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005786 C signal recognition particle, endoplasmic reticulum targeting
GO:0006614 P SRP-dependent cotranslational protein targeting to membrane
GO:0008144 F obsolete drug binding
GO:0008152 P metabolic process
GO:0008312 F 7S RNA binding
GO:0016607 C nuclear speck
GO:0019003 F GDP binding
GO:0030529 C ribonucleoprotein complex
GO:0030942 F endoplasmic reticulum signal peptide binding
GO:0042493 P response to xenobiotic stimulus
GO:0045047 P protein targeting to ER
GO:0048500 C signal recognition particle
8149 O_BomoIG13572_complete:A_BomoIG_DN29655_c0_g1_i2
502bp
 putative_signal_recognition_particle_54_kDa_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005786 C signal recognition particle, endoplasmic reticulum targeting
GO:0006614 P SRP-dependent cotranslational protein targeting to membrane
GO:0008144 F obsolete drug binding
GO:0008152 P metabolic process
GO:0008312 F 7S RNA binding
GO:0016607 C nuclear speck
GO:0019003 F GDP binding
GO:0030529 C ribonucleoprotein complex
GO:0030942 F endoplasmic reticulum signal peptide binding
GO:0042493 P response to xenobiotic stimulus
GO:0045047 P protein targeting to ER
GO:0048500 C signal recognition particle
8150 O_BomoIG13573_complete:A_BomoIG_DN29655_c0_g2_i1
144bp
 mitochondrial_ribosomal_protein_L54_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005840 C ribosome
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070125 P mitochondrial translational elongation
GO:0070126 P mitochondrial translational termination
8151 O_BomoIG13574_complete:A_BomoIG_DN29655_c0_g1_i3
206bp
 putative_signal_recognition_particle_54_kDa_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005786 C signal recognition particle, endoplasmic reticulum targeting
GO:0006614 P SRP-dependent cotranslational protein targeting to membrane
GO:0008144 F obsolete drug binding
GO:0008152 P metabolic process
GO:0008312 F 7S RNA binding
GO:0016607 C nuclear speck
GO:0019003 F GDP binding
GO:0030529 C ribonucleoprotein complex
GO:0030942 F endoplasmic reticulum signal peptide binding
GO:0042493 P response to xenobiotic stimulus
GO:0045047 P protein targeting to ER
GO:0048500 C signal recognition particle
8152 O_BomoIG13575_3prime_partial:A_BomoIG_DN29662_c0_g1_i1
501bp
 uncharacterized_protein_LOC101739130_isoform_X1_[Bombyx_mori]
8153 O_BomoIG13576_5prime_partial:A_BomoIG_DN29662_c0_g1_i1
157bp
8154 O_BomoIG13577_complete:A_BomoIG_DN29662_c0_g1_i2
641bp
 uncharacterized_protein_LOC101739130_isoform_X1_[Bombyx_mori]
8155 O_BomoIG13578_complete:A_BomoIG_DN29662_c0_g1_i3
209bp
 uncharacterized_protein_LOC101739130_isoform_X2_[Bombyx_mori]
8156 O_BomoIG13579_3prime_partial:A_BomoIG_DN29662_c0_g1_i4
598bp
 uncharacterized_protein_LOC101739130_isoform_X1_[Bombyx_mori]
8157 O_BomoIG1357_complete:A_BomoIG_DN30221_c0_g1_i2
137bp
8158 O_BomoIG13580_5prime_partial:A_BomoIG_DN29662_c0_g1_i4
157bp
8159 O_BomoIG13581_complete:A_BomoIG_DN29662_c0_g1_i5
544bp
 uncharacterized_protein_LOC101739130_isoform_X1_[Bombyx_mori]
8160 O_BomoIG13582_complete:A_BomoIG_DN29662_c0_g1_i6
142bp
 uncharacterized_protein_LOC101739130_isoform_X2_[Bombyx_mori]
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