SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/104180
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6691 O_BomoIG1225_5prime_partial:A_BomoIG_DN30293_c3_g2_i8
108bp
 hypothetical_protein_CH063_03160_[Colletotrichum_higginsianum]
6692 O_BomoIG12260_complete:A_BomoIG_DN31352_c0_g1_i37
166bp
 microprocessor_complex_subunit_DGCR8_[Bombyx_mori]
6693 O_BomoIG12261_complete:A_BomoIG_DN31352_c0_g1_i37
133bp
6694 O_BomoIG12262_complete:A_BomoIG_DN31352_c0_g1_i37
109bp
6695 O_BomoIG12263_complete:A_BomoIG_DN31352_c0_g1_i37
105bp
 microprocessor_complex_subunit_DGCR8_[Bombyx_mori]
6696 O_BomoIG12264_complete:A_BomoIG_DN31367_c0_g1_i1
495bp
 histone-lysine_N-methyltransferase_setd3_isoform_X1_[Bombyx_mori]
GO:0000790 C chromatin
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0016049 P cell growth
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018022 P peptidyl-lysine methylation
GO:0018023 P peptidyl-lysine trimethylation
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0018026 P peptidyl-lysine monomethylation
GO:0018027 P peptidyl-lysine dimethylation
GO:0032259 P methylation
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
6697 O_BomoIG12265_complete:A_BomoIG_DN31367_c0_g1_i1
109bp
 hypothetical_protein_ALC57_04897_[Trachymyrmex_cornetzi]
6698 O_BomoIG12266_complete:A_BomoIG_DN31367_c1_g1_i1
102bp
 uncharacterized_protein_Dmoj_GI25655,_isoform_A_[Drosophila_mojavensis]
6699 O_BomoIG12267_5prime_partial:A_BomoIG_DN31367_c1_g2_i1
407bp
 synaptotagmin-5_isoform_X2_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030154 P cell differentiation
GO:0030658 C transport vesicle membrane
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0042584 C chromaffin granule membrane
GO:0045202 C synapse
GO:0046872 F metal ion binding
6700 O_BomoIG12268_complete:A_BomoIG_DN31367_c1_g2_i2
499bp
 synaptotagmin-5_isoform_X2_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030154 P cell differentiation
GO:0030658 C transport vesicle membrane
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0042584 C chromaffin granule membrane
GO:0045202 C synapse
GO:0046872 F metal ion binding
6701 O_BomoIG12269_complete:A_BomoIG_DN31367_c1_g2_i4
499bp
 synaptotagmin-5_isoform_X2_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030154 P cell differentiation
GO:0030658 C transport vesicle membrane
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0042584 C chromaffin granule membrane
GO:0045202 C synapse
GO:0046872 F metal ion binding
6702 O_BomoIG1226_3prime_partial:A_BomoIG_DN30293_c3_g2_i11
279bp
 cytosolic_Fe-S_cluster_assembly_factor_nubp1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0016226 P iron-sulfur cluster assembly
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
6703 O_BomoIG12270_complete:A_BomoIG_DN31367_c1_g1_i3
140bp
 uncharacterized_protein_Dmoj_GI25655,_isoform_A_[Drosophila_mojavensis]
6704 O_BomoIG12271_complete:A_BomoIG_DN31367_c1_g2_i6
499bp
 synaptotagmin-5_isoform_X2_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030154 P cell differentiation
GO:0030658 C transport vesicle membrane
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0042584 C chromaffin granule membrane
GO:0045202 C synapse
GO:0046872 F metal ion binding
6705 O_BomoIG12272_complete:A_BomoIG_DN31367_c1_g2_i7
466bp
 synaptotagmin-5_isoform_X2_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030154 P cell differentiation
GO:0030658 C transport vesicle membrane
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0042584 C chromaffin granule membrane
GO:0045202 C synapse
GO:0046872 F metal ion binding
6706 O_BomoIG12273_complete:A_BomoIG_DN31367_c1_g2_i9
514bp
 synaptotagmin-5_isoform_X1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030154 P cell differentiation
GO:0030658 C transport vesicle membrane
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0042584 C chromaffin granule membrane
GO:0045202 C synapse
GO:0046872 F metal ion binding
6707 O_BomoIG12274_complete:A_BomoIG_DN31367_c1_g2_i10
451bp
 synaptotagmin-5_isoform_X1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030154 P cell differentiation
GO:0030658 C transport vesicle membrane
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0042584 C chromaffin granule membrane
GO:0045202 C synapse
GO:0046872 F metal ion binding
6708 O_BomoIG12275_complete:A_BomoIG_DN31367_c1_g1_i5
139bp
 uncharacterized_protein_Dmoj_GI25655,_isoform_B_[Drosophila_mojavensis]
6709 O_BomoIG12276_complete:A_BomoIG_DN31367_c1_g2_i11
499bp
 synaptotagmin-5_isoform_X2_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030154 P cell differentiation
GO:0030658 C transport vesicle membrane
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0042584 C chromaffin granule membrane
GO:0045202 C synapse
GO:0046872 F metal ion binding
6710 O_BomoIG12277_complete:A_BomoIG_DN31367_c1_g2_i12
231bp
 synaptotagmin-5_isoform_X1_[Bombyx_mori]
6711 O_BomoIG12278_complete:A_BomoIG_DN31367_c1_g2_i13
547bp
 synaptotagmin-5_isoform_X1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030154 P cell differentiation
GO:0030658 C transport vesicle membrane
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0042584 C chromaffin granule membrane
GO:0045202 C synapse
GO:0046872 F metal ion binding
6712 O_BomoIG12279_complete:A_BomoIG_DN31367_c1_g2_i14
170bp
 synaptotagmin-5_isoform_X1_[Bombyx_mori]
6713 O_BomoIG1227_5prime_partial:A_BomoIG_DN30293_c3_g2_i11
195bp
 hypothetical_protein_CI238_07286_[Colletotrichum_incanum]
6714 O_BomoIG12280_complete:A_BomoIG_DN31367_c1_g2_i15
381bp
 synaptotagmin-5_isoform_X1_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005544 F calcium-dependent phospholipid binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006906 P vesicle fusion
GO:0007340 P acrosome reaction
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017158 P regulation of calcium ion-dependent exocytosis
GO:0019898 C extrinsic component of membrane
GO:0019905 F syntaxin binding
GO:0030054 C cell junction
GO:0030276 F clathrin binding
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0045202 C synapse
GO:0046872 F metal ion binding
GO:0046982 F protein heterodimerization activity
GO:0048306 F calcium-dependent protein binding
GO:0048791 P calcium ion-regulated exocytosis of neurotransmitter
GO:0060478 P acrosomal vesicle exocytosis
GO:0070382 C exocytic vesicle
GO:0097038 C perinuclear endoplasmic reticulum
6715 O_BomoIG12281_complete:A_BomoIG_DN31367_c1_g2_i16
466bp
 synaptotagmin-5_isoform_X2_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030154 P cell differentiation
GO:0030658 C transport vesicle membrane
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0042584 C chromaffin granule membrane
GO:0045202 C synapse
GO:0046872 F metal ion binding
6716 O_BomoIG12282_complete:A_BomoIG_DN31367_c1_g2_i18
499bp
 synaptotagmin-5_isoform_X2_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030154 P cell differentiation
GO:0030658 C transport vesicle membrane
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0042584 C chromaffin granule membrane
GO:0045202 C synapse
GO:0046872 F metal ion binding
6717 O_BomoIG12283_complete:A_BomoIG_DN31372_c1_g1_i1
460bp
 ABC_transporter_G_family_member_23_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
6718 O_BomoIG12284_complete:A_BomoIG_DN31372_c1_g1_i1
136bp
6719 O_BomoIG12285_5prime_partial:A_BomoIG_DN31372_c1_g1_i2
133bp
 ABC_transporter_G_family_member_23_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0043190 C ATP-binding cassette (ABC) transporter complex
GO:0044351 P macropinocytosis
GO:0055085 P transmembrane transport
6720 O_BomoIG12286_complete:A_BomoIG_DN31372_c1_g1_i3
785bp
 ABC_transporter_G_family_member_23_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0043190 C ATP-binding cassette (ABC) transporter complex
GO:0044351 P macropinocytosis
GO:0055085 P transmembrane transport
previous next from show/104180

- SilkBase 1999-2023 -