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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6391 O_BomoIG11990_complete:A_BomoIG_DN31320_c1_g1_i3
679bp
 LOW_QUALITY_PROTEIN:_adhesion_G_protein-coupled_receptor_A3_[Bombyx_mori]
GO:0001525 P angiogenesis
GO:0001944 P vasculature development
GO:0002040 P sprouting angiogenesis
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007399 P nervous system development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016055 P Wnt signaling pathway
GO:1990791 P dorsal root ganglion development
6392 O_BomoIG11991_complete:A_BomoIG_DN31320_c1_g1_i3
200bp
6393 O_BomoIG11992_complete:A_BomoIG_DN31320_c1_g1_i3
179bp
6394 O_BomoIG11993_complete:A_BomoIG_DN31320_c1_g1_i3
101bp
6395 O_BomoIG11994_5prime_partial:A_BomoIG_DN31320_c2_g1_i1
1048bp
 nephrin_[Bombyx_mori]
GO:0003094 P glomerular filtration
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019904 F protein domain specific binding
GO:0030507 F spectrin binding
GO:0036057 C slit diaphragm
GO:0043234 C protein-containing complex
GO:0045121 C membrane raft
GO:0051393 F alpha-actinin binding
6396 O_BomoIG11995_complete:A_BomoIG_DN31320_c2_g1_i2
199bp
 nephrin_[Bombyx_mori]
6397 O_BomoIG11996_complete:A_BomoIG_DN31320_c2_g1_i2
103bp
 nephrin_[Bombyx_mori]
6398 O_BomoIG11997_complete:A_BomoIG_DN31320_c2_g1_i3
820bp
 nephrin_[Bombyx_mori]
GO:0000165 P MAPK cascade
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0007254 P JNK cascade
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0007519 P skeletal muscle tissue development
GO:0007520 P myoblast fusion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017022 F myosin binding
GO:0030838 P positive regulation of actin filament polymerization
GO:0032836 P glomerular basement membrane development
GO:0035418 P protein localization to synapse
GO:0036057 C slit diaphragm
GO:0042995 C cell projection
GO:0044062 P regulation of excretion
GO:0070062 C extracellular exosome
GO:0072015 P glomerular visceral epithelial cell development
6399 O_BomoIG11998_complete:A_BomoIG_DN31320_c2_g1_i3
109bp
6400 O_BomoIG11999_5prime_partial:A_BomoIG_DN31320_c2_g1_i4
1032bp
 nephrin_[Bombyx_mori]
GO:0003094 P glomerular filtration
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019904 F protein domain specific binding
GO:0030507 F spectrin binding
GO:0036057 C slit diaphragm
GO:0043234 C protein-containing complex
GO:0045121 C membrane raft
GO:0051393 F alpha-actinin binding
6401 O_BomoIG1199_complete:A_BomoIG_DN30281_c7_g1_i4
106bp
 CCR4-NOT_transcription_complex_subunit_6_isoform_X2_[Bombyx_mori]
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004532 F exoribonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0006977 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0008284 P positive regulation of cell population proliferation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030014 C CCR4-NOT complex
GO:0031047 P gene silencing by RNA
GO:0035195 P gene silencing by miRNA
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0046872 F metal ion binding
GO:0070966 P nuclear-transcribed mRNA catabolic process, no-go decay
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:2000327 P obsolete positive regulation of nuclear receptor transcription coactivator activity
6402 O_BomoIG119_complete:A_BomoIG_DN30288_c4_g2_i4
784bp
 endothelin-converting_enzyme_homolog_isoform_X1_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016485 P protein processing
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
6403 O_BomoIG11_complete:A_BomoIG_DN30257_c0_g3_i3
109bp
 semaphorin-2A_isoform_X2_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0030154 P cell differentiation
6404 O_BomoIG12000_5prime_partial:A_BomoIG_DN31320_c2_g1_i4
151bp
6405 O_BomoIG12001_5prime_partial:A_BomoIG_DN31320_c2_g1_i5
935bp
 nephrin_[Bombyx_mori]
GO:0003094 P glomerular filtration
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019904 F protein domain specific binding
GO:0030507 F spectrin binding
GO:0036057 C slit diaphragm
GO:0043234 C protein-containing complex
GO:0045121 C membrane raft
GO:0051393 F alpha-actinin binding
6406 O_BomoIG12002_complete:A_BomoIG_DN31320_c2_g1_i5
103bp
 nephrin_[Bombyx_mori]
6407 O_BomoIG12003_complete:A_BomoIG_DN31320_c2_g1_i6
340bp
 nephrin_[Bombyx_mori]
6408 O_BomoIG12004_3prime_partial:A_BomoIG_DN31320_c2_g2_i1
363bp
 nephrin_[Bombyx_mori]
GO:0000165 P MAPK cascade
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0007254 P JNK cascade
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0007519 P skeletal muscle tissue development
GO:0007520 P myoblast fusion
GO:0007588 P excretion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017022 F myosin binding
GO:0030838 P positive regulation of actin filament polymerization
GO:0032836 P glomerular basement membrane development
GO:0035418 P protein localization to synapse
GO:0036057 C slit diaphragm
GO:0042995 C cell projection
GO:0044062 P regulation of excretion
GO:0070062 C extracellular exosome
GO:0072015 P glomerular visceral epithelial cell development
6409 O_BomoIG12005_5prime_partial:A_BomoIG_DN31320_c2_g2_i1
124bp
6410 O_BomoIG12006_internal:A_BomoIG_DN31320_c2_g1_i7
233bp
 nephrin_[Bombyx_mori]
6411 O_BomoIG12007_complete:A_BomoIG_DN31320_c2_g1_i8
227bp
 nephrin_[Bombyx_mori]
6412 O_BomoIG12008_complete:A_BomoIG_DN31320_c2_g1_i8
103bp
 nephrin_[Bombyx_mori]
6413 O_BomoIG12009_complete:A_BomoIG_DN31320_c2_g1_i9
707bp
 nephrin_[Bombyx_mori]
GO:0000165 P MAPK cascade
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0007254 P JNK cascade
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0007519 P skeletal muscle tissue development
GO:0007520 P myoblast fusion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017022 F myosin binding
GO:0030838 P positive regulation of actin filament polymerization
GO:0032836 P glomerular basement membrane development
GO:0035418 P protein localization to synapse
GO:0036057 C slit diaphragm
GO:0042995 C cell projection
GO:0044062 P regulation of excretion
GO:0070062 C extracellular exosome
GO:0072015 P glomerular visceral epithelial cell development
6414 O_BomoIG1200_3prime_partial:A_BomoIG_DN30281_c7_g1_i5
181bp
 CCR4-NOT_transcription_complex_subunit_6_isoform_X1_[Bombyx_mori]
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004532 F exoribonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0006977 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0008284 P positive regulation of cell population proliferation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030014 C CCR4-NOT complex
GO:0031047 P gene silencing by RNA
GO:0035195 P gene silencing by miRNA
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0046872 F metal ion binding
GO:0070966 P nuclear-transcribed mRNA catabolic process, no-go decay
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:2000327 P obsolete positive regulation of nuclear receptor transcription coactivator activity
6415 O_BomoIG12010_complete:A_BomoIG_DN31320_c2_g1_i9
109bp
6416 O_BomoIG12011_complete:A_BomoIG_DN31320_c2_g1_i9
103bp
 nephrin_[Bombyx_mori]
6417 O_BomoIG12012_5prime_partial:A_BomoIG_DN31320_c2_g1_i10
935bp
 nephrin_[Bombyx_mori]
GO:0003094 P glomerular filtration
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019904 F protein domain specific binding
GO:0030507 F spectrin binding
GO:0036057 C slit diaphragm
GO:0043234 C protein-containing complex
GO:0045121 C membrane raft
GO:0051393 F alpha-actinin binding
6418 O_BomoIG12013_5prime_partial:A_BomoIG_DN31320_c2_g1_i10
113bp
6419 O_BomoIG12014_internal:A_BomoIG_DN31320_c2_g1_i11
949bp
 nephrin_[Bombyx_mori]
GO:0003094 P glomerular filtration
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019904 F protein domain specific binding
GO:0030507 F spectrin binding
GO:0036057 C slit diaphragm
GO:0043234 C protein-containing complex
GO:0045121 C membrane raft
GO:0051393 F alpha-actinin binding
6420 O_BomoIG12015_complete:A_BomoIG_DN31320_c2_g1_i12
312bp
 nephrin_[Bombyx_mori]
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