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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5971 O_BomoIG11611_internal:A_BomoIG_DN31361_c5_g1_i3
146bp
 cytochrome_P450,_partial_[Bombyx_mori]
5972 O_BomoIG11612_complete:A_BomoIG_DN31361_c5_g2_i3
149bp
5973 O_BomoIG11613_5prime_partial:A_BomoIG_DN31361_c5_g1_i5
121bp
 cytochrome_P450,_partial_[Bombyx_mori]
5974 O_BomoIG11614_complete:A_BomoIG_DN31361_c6_g1_i1
219bp
 structural_maintenance_of_chromosomes_protein_5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000722 P telomere maintenance via recombination
GO:0000724 P double-strand break repair via homologous recombination
GO:0000781 C chromosome, telomeric region
GO:0000803 C sex chromosome
GO:0003674 F molecular_function
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016605 C PML body
GO:0030054 C cell junction
GO:0030915 C Smc5-Smc6 complex
GO:0034184 P positive regulation of maintenance of mitotic sister chromatid cohesion
GO:0035061 C interchromatin granule
GO:0035861 C site of double-strand break
GO:0045842 P positive regulation of mitotic metaphase/anaphase transition
GO:0051301 P cell division
GO:0051984 P positive regulation of chromosome segregation
GO:0090398 P cellular senescence
5975 O_BomoIG11615_complete:A_BomoIG_DN31361_c6_g1_i2
107bp
 structural_maintenance_of_chromosomes_protein_5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000722 P telomere maintenance via recombination
GO:0000724 P double-strand break repair via homologous recombination
GO:0000781 C chromosome, telomeric region
GO:0000803 C sex chromosome
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016605 C PML body
GO:0016925 P protein sumoylation
GO:0030054 C cell junction
GO:0030915 C Smc5-Smc6 complex
GO:0034184 P positive regulation of maintenance of mitotic sister chromatid cohesion
GO:0035061 C interchromatin granule
GO:0035861 C site of double-strand break
GO:0045842 P positive regulation of mitotic metaphase/anaphase transition
GO:0051301 P cell division
GO:0051984 P positive regulation of chromosome segregation
GO:0090398 P cellular senescence
5976 O_BomoIG11616_complete:A_BomoIG_DN31361_c6_g2_i2
121bp
 histone-lysine_N-methyltransferase_SETMAR-like,_partial_[Pseudomyrmex_gracilis]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
5977 O_BomoIG11617_complete:A_BomoIG_DN31361_c6_g2_i2
109bp
5978 O_BomoIG11618_complete:A_BomoIG_DN31361_c6_g1_i3
184bp
 structural_maintenance_of_chromosomes_protein_5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007062 P sister chromatid cohesion
GO:0009506 C plasmodesma
GO:0030915 C Smc5-Smc6 complex
5979 O_BomoIG11619_complete:A_BomoIG_DN31361_c6_g1_i5
180bp
 structural_maintenance_of_chromosomes_protein_5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000722 P telomere maintenance via recombination
GO:0000724 P double-strand break repair via homologous recombination
GO:0000781 C chromosome, telomeric region
GO:0000803 C sex chromosome
GO:0003674 F molecular_function
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016605 C PML body
GO:0030054 C cell junction
GO:0030915 C Smc5-Smc6 complex
GO:0034184 P positive regulation of maintenance of mitotic sister chromatid cohesion
GO:0035061 C interchromatin granule
GO:0035861 C site of double-strand break
GO:0045842 P positive regulation of mitotic metaphase/anaphase transition
GO:0051301 P cell division
GO:0051984 P positive regulation of chromosome segregation
GO:0090398 P cellular senescence
5980 O_BomoIG1161_complete:A_BomoIG_DN30255_c2_g1_i15
159bp
5981 O_BomoIG11620_complete:A_BomoIG_DN31361_c6_g1_i6
142bp
 structural_maintenance_of_chromosomes_protein_5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000722 P telomere maintenance via recombination
GO:0000724 P double-strand break repair via homologous recombination
GO:0000781 C chromosome, telomeric region
GO:0000803 C sex chromosome
GO:0003674 F molecular_function
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016605 C PML body
GO:0030054 C cell junction
GO:0030915 C Smc5-Smc6 complex
GO:0034184 P positive regulation of maintenance of mitotic sister chromatid cohesion
GO:0035061 C interchromatin granule
GO:0035861 C site of double-strand break
GO:0045842 P positive regulation of mitotic metaphase/anaphase transition
GO:0051301 P cell division
GO:0051984 P positive regulation of chromosome segregation
GO:0090398 P cellular senescence
5982 O_BomoIG11621_complete:A_BomoIG_DN31361_c6_g1_i7
184bp
 structural_maintenance_of_chromosomes_protein_5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007062 P sister chromatid cohesion
GO:0009506 C plasmodesma
GO:0030915 C Smc5-Smc6 complex
5983 O_BomoIG11622_complete:A_BomoIG_DN31361_c6_g1_i8
155bp
 structural_maintenance_of_chromosomes_protein_5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000722 P telomere maintenance via recombination
GO:0000724 P double-strand break repair via homologous recombination
GO:0000781 C chromosome, telomeric region
GO:0000803 C sex chromosome
GO:0003674 F molecular_function
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016605 C PML body
GO:0030054 C cell junction
GO:0030915 C Smc5-Smc6 complex
GO:0034184 P positive regulation of maintenance of mitotic sister chromatid cohesion
GO:0035061 C interchromatin granule
GO:0035861 C site of double-strand break
GO:0045842 P positive regulation of mitotic metaphase/anaphase transition
GO:0051301 P cell division
GO:0051984 P positive regulation of chromosome segregation
GO:0090398 P cellular senescence
5984 O_BomoIG11623_complete:A_BomoIG_DN31361_c6_g1_i9
219bp
 structural_maintenance_of_chromosomes_protein_5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000722 P telomere maintenance via recombination
GO:0000724 P double-strand break repair via homologous recombination
GO:0000781 C chromosome, telomeric region
GO:0000803 C sex chromosome
GO:0003674 F molecular_function
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016605 C PML body
GO:0030054 C cell junction
GO:0030915 C Smc5-Smc6 complex
GO:0034184 P positive regulation of maintenance of mitotic sister chromatid cohesion
GO:0035061 C interchromatin granule
GO:0035861 C site of double-strand break
GO:0045842 P positive regulation of mitotic metaphase/anaphase transition
GO:0051301 P cell division
GO:0051984 P positive regulation of chromosome segregation
GO:0090398 P cellular senescence
5985 O_BomoIG11624_3prime_partial:A_BomoIG_DN31361_c6_g1_i10
124bp
 structural_maintenance_of_chromosomes_protein_5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007062 P sister chromatid cohesion
GO:0009506 C plasmodesma
GO:0030915 C Smc5-Smc6 complex
5986 O_BomoIG11625_complete:A_BomoIG_DN31361_c6_g1_i11
120bp
 structural_maintenance_of_chromosomes_protein_5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000722 P telomere maintenance via recombination
GO:0000724 P double-strand break repair via homologous recombination
GO:0000781 C chromosome, telomeric region
GO:0000803 C sex chromosome
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016605 C PML body
GO:0016925 P protein sumoylation
GO:0030054 C cell junction
GO:0030915 C Smc5-Smc6 complex
GO:0034184 P positive regulation of maintenance of mitotic sister chromatid cohesion
GO:0035061 C interchromatin granule
GO:0035861 C site of double-strand break
GO:0045842 P positive regulation of mitotic metaphase/anaphase transition
GO:0051301 P cell division
GO:0051984 P positive regulation of chromosome segregation
GO:0090398 P cellular senescence
5987 O_BomoIG11626_3prime_partial:A_BomoIG_DN31318_c1_g1_i2
231bp
 chondroitin_sulfate_synthase_2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0008376 F acetylgalactosaminyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030206 P chondroitin sulfate biosynthetic process
GO:0032580 C Golgi cisterna membrane
GO:0046872 F metal ion binding
GO:0047238 F glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050510 F N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity
5988 O_BomoIG11627_complete:A_BomoIG_DN31318_c1_g1_i2
146bp
5989 O_BomoIG11628_complete:A_BomoIG_DN31318_c1_g1_i4
218bp
 DNA-directed_RNA_polymerase_III_subunit_RPC7-like_[Bombyx_mori]
GO:0000790 C chromatin
GO:0001056 F RNA polymerase III activity
GO:0002376 P immune system process
GO:0005634 C nucleus
GO:0005666 C RNA polymerase III complex
GO:0006351 P transcription, DNA-templated
GO:0006359 P regulation of transcription by RNA polymerase III
GO:0006384 P transcription initiation from RNA polymerase III promoter
GO:0008283 P cell population proliferation
GO:0032728 P positive regulation of interferon-beta production
GO:0045087 P innate immune response
GO:0045089 P positive regulation of innate immune response
GO:0051607 P defense response to virus
5990 O_BomoIG11629_5prime_partial:A_BomoIG_DN31318_c1_g1_i4
185bp
 sperm-associated_antigen_6_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005929 C cilium
GO:0005930 C axoneme
GO:0007286 P spermatid development
GO:0015630 C microtubule cytoskeleton
GO:0030030 P cell projection organization
GO:0031514 C motile cilium
GO:0042995 C cell projection
5991 O_BomoIG1162_complete:A_BomoIG_DN30255_c2_g1_i15
139bp
 hypothetical_protein_AX774_g1302_[Zancudomyces_culisetae]
5992 O_BomoIG11630_3prime_partial:A_BomoIG_DN31318_c1_g1_i6
411bp
 chondroitin_sulfate_synthase_2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0008376 F acetylgalactosaminyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030206 P chondroitin sulfate biosynthetic process
GO:0032580 C Golgi cisterna membrane
GO:0046872 F metal ion binding
GO:0047238 F glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050510 F N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity
5993 O_BomoIG11631_3prime_partial:A_BomoIG_DN31318_c1_g1_i9
231bp
 chondroitin_sulfate_synthase_2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0008376 F acetylgalactosaminyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030206 P chondroitin sulfate biosynthetic process
GO:0032580 C Golgi cisterna membrane
GO:0046872 F metal ion binding
GO:0047238 F glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050510 F N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity
5994 O_BomoIG11632_complete:A_BomoIG_DN31318_c1_g1_i9
146bp
5995 O_BomoIG11633_complete:A_BomoIG_DN31318_c1_g1_i13
465bp
 chondroitin_sulfate_synthase_2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0008376 F acetylgalactosaminyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030206 P chondroitin sulfate biosynthetic process
GO:0032580 C Golgi cisterna membrane
GO:0046872 F metal ion binding
GO:0047238 F glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050510 F N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity
5996 O_BomoIG11634_3prime_partial:A_BomoIG_DN31318_c1_g1_i16
693bp
 chondroitin_sulfate_synthase_2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0008376 F acetylgalactosaminyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030206 P chondroitin sulfate biosynthetic process
GO:0032580 C Golgi cisterna membrane
GO:0046872 F metal ion binding
GO:0047238 F glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050510 F N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity
5997 O_BomoIG11635_5prime_partial:A_BomoIG_DN31318_c1_g1_i16
316bp
5998 O_BomoIG11636_complete:A_BomoIG_DN31318_c1_g1_i16
146bp
5999 O_BomoIG11637_complete:A_BomoIG_DN31318_c1_g1_i17
218bp
 DNA-directed_RNA_polymerase_III_subunit_RPC7-like_[Bombyx_mori]
GO:0000790 C chromatin
GO:0001056 F RNA polymerase III activity
GO:0002376 P immune system process
GO:0005634 C nucleus
GO:0005666 C RNA polymerase III complex
GO:0006351 P transcription, DNA-templated
GO:0006359 P regulation of transcription by RNA polymerase III
GO:0006384 P transcription initiation from RNA polymerase III promoter
GO:0008283 P cell population proliferation
GO:0032728 P positive regulation of interferon-beta production
GO:0045087 P innate immune response
GO:0045089 P positive regulation of innate immune response
GO:0051607 P defense response to virus
6000 O_BomoIG11638_5prime_partial:A_BomoIG_DN31318_c1_g1_i17
185bp
 sperm-associated_antigen_6_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005929 C cilium
GO:0005930 C axoneme
GO:0007286 P spermatid development
GO:0015630 C microtubule cytoskeleton
GO:0030030 P cell projection organization
GO:0031514 C motile cilium
GO:0042995 C cell projection
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