Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
4801	O_BomoIG10559_complete:A_BomoIG_DN33766_c1_g1_i21 103bp	Bomo_Chr8
4802	O_BomoIG1055_5prime_partial:A_BomoIG_DN30275_c1_g1_i10 191bp	Bomo_Chr11	U1_small_nuclear_ribonucleoprotein_A_isoform_X1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000381 P regulation of alternative mRNA splicing, via spliceosome GO:0000398 P mRNA splicing, via spliceosome GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0003729 F mRNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0005681 C spliceosomal complex GO:0005685 C U1 snRNP GO:0005686 C U2 snRNP GO:0006397 P mRNA processing GO:0007539 P primary sex determination, soma GO:0008266 F poly(U) RNA binding GO:0008380 P RNA splicing GO:0017069 F snRNA binding GO:0019099 P female germ-line sex determination GO:0030529 C ribonucleoprotein complex GO:0030532 C small nuclear ribonucleoprotein complex GO:0030619 F U1 snRNA binding GO:0030620 F U2 snRNA binding GO:0035614 F snRNA stem-loop binding GO:0042802 F identical protein binding GO:0043234 C protein-containing complex GO:0048477 P oogenesis GO:0071011 C precatalytic spliceosome GO:0071013 C catalytic step 2 spliceosome GO:0097158 F pre-mRNA intronic pyrimidine-rich binding
4803	O_BomoIG10560_internal:A_BomoIG_DN33766_c1_g1_i25 134bp	Bomo_Chr12	PREDICTED:_uncharacterized_protein_LOC106709010_[Papilio_machaon]
4804	O_BomoIG10561_5prime_partial:A_BomoIG_DN33766_c1_g1_i25 115bp	Bomo_Chr12
4805	O_BomoIG10562_complete:A_BomoIG_DN33766_c1_g1_i26 525bp	Bomo_Chr16	Retrovirus-related_Pol_polyprotein_LINE-1_[Zea_mays]	GO:0003824 F catalytic activity GO:0003964 F RNA-directed DNA polymerase activity GO:0004518 F nuclease activity GO:0004519 F endonuclease activity GO:0006278 P RNA-dependent DNA biosynthetic process GO:0006310 P DNA recombination GO:0008152 P metabolic process GO:0016740 F transferase activity GO:0016779 F nucleotidyltransferase activity GO:0016787 F hydrolase activity GO:0046872 F metal ion binding GO:0090305 P nucleic acid phosphodiester bond hydrolysis
4806	O_BomoIG10563_complete:A_BomoIG_DN33766_c1_g1_i26 103bp	Bomo_Chr16
4807	O_BomoIG10564_internal:A_BomoIG_DN33766_c1_g1_i27 225bp	Bomo_Chr5	PREDICTED:_uncharacterized_protein_LOC106125025_[Papilio_xuthus]	GO:0003964 F RNA-directed DNA polymerase activity GO:0006278 P RNA-dependent DNA biosynthetic process GO:0008152 P metabolic process GO:0016740 F transferase activity GO:0016779 F nucleotidyltransferase activity
4808	O_BomoIG10565_complete:A_BomoIG_DN33766_c1_g1_i27 103bp	Bomo_Chr5
4809	O_BomoIG10566_internal:A_BomoIG_DN33766_c1_g1_i29 151bp	Bomo_Chr6	PREDICTED:_uncharacterized_protein_LOC106709010_[Papilio_machaon]
4810	O_BomoIG10567_3prime_partial:A_BomoIG_DN33714_c0_g3_i1 184bp	Bomo_Chr24	ADP/ATP_translocase_[Bombyx_mori]	GO:0001508 P action potential GO:0003735 F structural constituent of ribosome GO:0005215 F transporter activity GO:0005471 F ATP:ADP antiporter activity GO:0005739 C mitochondrion GO:0005743 C mitochondrial inner membrane GO:0005811 C lipid droplet GO:0005829 C cytosol GO:0006412 P translation GO:0006810 P transport GO:0006839 P mitochondrial transport GO:0007268 P chemical synaptic transmission GO:0007629 P flight behavior GO:0008340 P determination of adult lifespan GO:0009612 P response to mechanical stimulus GO:0010507 P negative regulation of autophagy GO:0015866 P ADP transport GO:0015867 P ATP transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0022857 F transmembrane transporter activity GO:0031966 C mitochondrial membrane GO:0034599 P cellular response to oxidative stress GO:0040011 P locomotion GO:0046716 P muscle cell cellular homeostasis GO:0048477 P oogenesis GO:0048489 P synaptic vesicle transport GO:0051124 P synaptic assembly at neuromuscular junction GO:0051480 P regulation of cytosolic calcium ion concentration GO:0051560 P mitochondrial calcium ion homeostasis GO:0051900 P regulation of mitochondrial depolarization GO:0055085 P transmembrane transport GO:0070050 P neuron cellular homeostasis GO:2001171 P positive regulation of ATP biosynthetic process
4811	O_BomoIG10568_5prime_partial:A_BomoIG_DN33714_c0_g3_i1 114bp	Bomo_Chr24	hypothetical_protein_H310_04184_[Aphanomyces_invadans]
4812	O_BomoIG10569_internal:A_BomoIG_DN33789_c1_g6_i1 110bp	Bomo_Chr23	PREDICTED:_uncharacterized_protein_LOC106106759_[Papilio_polytes]
4813	O_BomoIG1056_complete:A_BomoIG_DN30275_c1_g1_i10 102bp	Bomo_Chr11
4814	O_BomoIG10570_3prime_partial:A_BomoIG_DN33732_c1_g7_i1 301bp	Bomo_Chr3	macoilin_[Bombyx_mori]	GO:0005634 C nucleus GO:0007420 P brain development GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0030424 C axon GO:0031965 C nuclear membrane GO:0042995 C cell projection GO:0043005 C neuron projection GO:0044306 C neuron projection terminus GO:0045202 C synapse
4815	O_BomoIG10571_complete:A_BomoIG_DN33732_c1_g7_i1 183bp	Bomo_Chr3
4816	O_BomoIG10572_internal:A_BomoIG_DN33732_c1_g9_i1 154bp	Bomo_Chr15	uncharacterized_protein_LOC101742795_[Bombyx_mori]
4817	O_BomoIG10573_5prime_partial:A_BomoIG_DN33732_c1_g9_i1 125bp	Bomo_Chr15
4818	O_BomoIG10574_5prime_partial:A_BomoIG_DN33732_c1_g9_i1 121bp	Bomo_Chr15
4819	O_BomoIG10575_complete:A_BomoIG_DN33732_c1_g7_i3 134bp	Bomo_Chr3	macoilin_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005634 C nucleus GO:0008150 P biological_process GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0030424 C axon GO:0031965 C nuclear membrane GO:0042995 C cell projection
4820	O_BomoIG10576_internal:A_BomoIG_DN33732_c1_g9_i2 142bp	Bomo_Chr15	uncharacterized_protein_LOC101742795_[Bombyx_mori]
4821	O_BomoIG10577_5prime_partial:A_BomoIG_DN33732_c1_g9_i2 138bp	Bomo_Chr15
4822	O_BomoIG10578_complete:A_BomoIG_DN33732_c1_g7_i5 266bp	Bomo_Chr3	macoilin_[Bombyx_mori]	GO:0005634 C nucleus GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0030424 C axon GO:0031965 C nuclear membrane GO:0042995 C cell projection
4823	O_BomoIG10579_complete:A_BomoIG_DN33732_c1_g7_i5 134bp	Bomo_Chr3
4824	O_BomoIG1057_5prime_partial:A_BomoIG_DN30275_c1_g1_i11 191bp	Bomo_Chr11	U1_small_nuclear_ribonucleoprotein_A_isoform_X1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000381 P regulation of alternative mRNA splicing, via spliceosome GO:0000398 P mRNA splicing, via spliceosome GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0003729 F mRNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0005681 C spliceosomal complex GO:0005685 C U1 snRNP GO:0005686 C U2 snRNP GO:0006397 P mRNA processing GO:0007539 P primary sex determination, soma GO:0008266 F poly(U) RNA binding GO:0008380 P RNA splicing GO:0017069 F snRNA binding GO:0019099 P female germ-line sex determination GO:0030529 C ribonucleoprotein complex GO:0030532 C small nuclear ribonucleoprotein complex GO:0030619 F U1 snRNA binding GO:0030620 F U2 snRNA binding GO:0035614 F snRNA stem-loop binding GO:0042802 F identical protein binding GO:0043234 C protein-containing complex GO:0048477 P oogenesis GO:0071011 C precatalytic spliceosome GO:0071013 C catalytic step 2 spliceosome GO:0097158 F pre-mRNA intronic pyrimidine-rich binding
4825	O_BomoIG10580_complete:A_BomoIG_DN33757_c2_g1_i1 738bp	Bomo_Chr25	neurochondrin_homolog_[Bombyx_mori]	GO:0003012 P muscle system process GO:0003674 F molecular_function GO:0030425 C dendrite GO:0043025 C neuronal cell body
4826	O_BomoIG10581_complete:A_BomoIG_DN33757_c2_g1_i2 738bp	Bomo_Chr25	neurochondrin_homolog_[Bombyx_mori]	GO:0003012 P muscle system process GO:0003674 F molecular_function GO:0030425 C dendrite GO:0043025 C neuronal cell body
4827	O_BomoIG10582_complete:A_BomoIG_DN33757_c2_g1_i3 738bp	Bomo_Chr25	neurochondrin_homolog_[Bombyx_mori]	GO:0003012 P muscle system process GO:0003674 F molecular_function GO:0030425 C dendrite GO:0043025 C neuronal cell body
4828	O_BomoIG10583_complete:A_BomoIG_DN33757_c2_g1_i4 738bp	Bomo_Chr25	neurochondrin_homolog_[Bombyx_mori]	GO:0003012 P muscle system process GO:0003674 F molecular_function GO:0030425 C dendrite GO:0043025 C neuronal cell body
4829	O_BomoIG10584_complete:A_BomoIG_DN33739_c7_g1_i1 1029bp	Bomo_Chr17	LOW_QUALITY_PROTEIN:_voltage-dependent_T-type_calcium_channel_subunit_alpha-1G_[Bombyx_mori]	GO:0005216 F ion channel activity GO:0005244 F voltage-gated ion channel activity GO:0005245 F voltage-gated calcium channel activity GO:0005262 F calcium channel activity GO:0005886 C plasma membrane GO:0005891 C voltage-gated calcium channel complex GO:0006810 P transport GO:0006811 P ion transport GO:0006816 P calcium ion transport GO:0007204 P positive regulation of cytosolic calcium ion concentration GO:0008332 F low voltage-gated calcium channel activity GO:0014824 P artery smooth muscle contraction GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0030425 C dendrite GO:0034765 P regulation of ion transmembrane transport GO:0043025 C neuronal cell body GO:0044297 C cell body GO:0045956 P positive regulation of calcium ion-dependent exocytosis GO:0048471 C perinuclear region of cytoplasm GO:0051924 P regulation of calcium ion transport GO:0055085 P transmembrane transport GO:0060402 P calcium ion transport into cytosol GO:0070509 P calcium ion import GO:0070588 P calcium ion transmembrane transport GO:0071549 P cellular response to dexamethasone stimulus GO:0086010 P membrane depolarization during action potential GO:0086015 P SA node cell action potential GO:0086016 P AV node cell action potential GO:0086018 P SA node cell to atrial cardiac muscle cell signaling GO:0086027 P AV node cell to bundle of His cell signaling GO:0086045 P membrane depolarization during AV node cell action potential GO:0086046 P membrane depolarization during SA node cell action potential GO:0086056 F voltage-gated calcium channel activity involved in AV node cell action potential GO:0086059 F voltage-gated calcium channel activity involved SA node cell action potential GO:0086091 P regulation of heart rate by cardiac conduction
4830	O_BomoIG10585_3prime_partial:A_BomoIG_DN33739_c7_g1_i1 636bp	Bomo_Chr17	LOW_QUALITY_PROTEIN:_voltage-dependent_T-type_calcium_channel_subunit_alpha-1G_[Bombyx_mori]	GO:0005216 F ion channel activity GO:0005244 F voltage-gated ion channel activity GO:0005245 F voltage-gated calcium channel activity GO:0005262 F calcium channel activity GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0005886 C plasma membrane GO:0005891 C voltage-gated calcium channel complex GO:0006810 P transport GO:0006811 P ion transport GO:0006816 P calcium ion transport GO:0008332 F low voltage-gated calcium channel activity GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0019233 P sensory perception of pain GO:0030425 C dendrite GO:0032342 P aldosterone biosynthetic process GO:0034651 P cortisol biosynthetic process GO:0034765 P regulation of ion transmembrane transport GO:0043204 C perikaryon GO:0045956 P positive regulation of calcium ion-dependent exocytosis GO:0046872 F metal ion binding GO:0055085 P transmembrane transport GO:0070509 P calcium ion import GO:0070588 P calcium ion transmembrane transport GO:0086010 P membrane depolarization during action potential