SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/104180
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4231 O_BomoIG103809_5prime_partial:A_BomoIG_DN29870_c6_g2_i4
114bp
4232 O_BomoIG10380_5prime_partial:A_BomoIG_DN33710_c0_g1_i4
371bp
 uncharacterized_protein_LOC101737399_[Bombyx_mori]
4233 O_BomoIG103810_internal:A_BomoIG_DN29870_c6_g5_i2
120bp
4234 O_BomoIG103811_internal:A_BomoIG_DN29870_c6_g5_i2
120bp
 zinc_finger_protein_837_[Bombyx_mori]
4235 O_BomoIG103812_5prime_partial:A_BomoIG_DN29870_c6_g5_i2
100bp
4236 O_BomoIG103813_complete:A_BomoIG_DN29870_c6_g3_i3
251bp
 serine_hydroxymethyltransferase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004372 F glycine hydroxymethyltransferase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006544 P glycine metabolic process
GO:0006563 P L-serine metabolic process
GO:0006730 P one-carbon metabolic process
GO:0016740 F transferase activity
GO:0030170 F pyridoxal phosphate binding
GO:0035999 P tetrahydrofolate interconversion
GO:0046653 P tetrahydrofolate metabolic process
GO:0051289 P protein homotetramerization
4237 O_BomoIG103814_complete:A_BomoIG_DN29870_c6_g3_i4
156bp
 serine_hydroxymethyltransferase_[Bombyx_mori]
GO:0003682 F chromatin binding
GO:0003824 F catalytic activity
GO:0004372 F glycine hydroxymethyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005758 C mitochondrial intermembrane space
GO:0005759 C mitochondrial matrix
GO:0006544 P glycine metabolic process
GO:0006545 P glycine biosynthetic process
GO:0006563 P L-serine metabolic process
GO:0006564 P L-serine biosynthetic process
GO:0006730 P one-carbon metabolic process
GO:0008284 P positive regulation of cell population proliferation
GO:0008732 F L-allo-threonine aldolase activity
GO:0015630 C microtubule cytoskeleton
GO:0016020 C membrane
GO:0016597 F amino acid binding
GO:0016740 F transferase activity
GO:0019264 P glycine biosynthetic process from serine
GO:0030170 F pyridoxal phosphate binding
GO:0034340 P response to type I interferon
GO:0035999 P tetrahydrofolate interconversion
GO:0042645 C mitochondrial nucleoid
GO:0042802 F identical protein binding
GO:0046653 P tetrahydrofolate metabolic process
GO:0046655 P folic acid metabolic process
GO:0051262 P protein tetramerization
GO:0051289 P protein homotetramerization
GO:0070062 C extracellular exosome
GO:0070536 P protein K63-linked deubiquitination
GO:0070552 C BRISC complex
4238 O_BomoIG103815_complete:A_BomoIG_DN29870_c6_g3_i4
150bp
 Uncharacterised_protein_[Vibrio_cholerae]
4239 O_BomoIG103816_complete:A_BomoIG_DN29870_c6_g3_i5
466bp
 serine_hydroxymethyltransferase_isoform_X1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004372 F glycine hydroxymethyltransferase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006544 P glycine metabolic process
GO:0006563 P L-serine metabolic process
GO:0006730 P one-carbon metabolic process
GO:0016740 F transferase activity
GO:0030170 F pyridoxal phosphate binding
GO:0035999 P tetrahydrofolate interconversion
GO:0046653 P tetrahydrofolate metabolic process
GO:0051289 P protein homotetramerization
4240 O_BomoIG103817_complete:A_BomoIG_DN29870_c6_g3_i5
123bp
4241 O_BomoIG103818_complete:A_BomoIG_DN29870_c6_g3_i6
302bp
 serine_hydroxymethyltransferase_isoform_X1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004372 F glycine hydroxymethyltransferase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006544 P glycine metabolic process
GO:0006563 P L-serine metabolic process
GO:0006730 P one-carbon metabolic process
GO:0016740 F transferase activity
GO:0030170 F pyridoxal phosphate binding
GO:0035999 P tetrahydrofolate interconversion
GO:0046653 P tetrahydrofolate metabolic process
GO:0051289 P protein homotetramerization
4242 O_BomoIG103819_internal:A_BomoIG_DN29870_c6_g5_i4
159bp
 longitudinals_lacking_protein,_isoforms_H/M/V,_partial_[Bombyx_mori]
4243 O_BomoIG10381_3prime_partial:A_BomoIG_DN33710_c0_g1_i4
108bp
4244 O_BomoIG103820_internal:A_BomoIG_DN29870_c6_g5_i4
159bp
4245 O_BomoIG103821_5prime_partial:A_BomoIG_DN29870_c6_g5_i4
100bp
4246 O_BomoIG103822_5prime_partial:A_BomoIG_DN29870_c6_g5_i6
112bp
 longitudinals_lacking_protein,_isoforms_H/M/V,_partial_[Bombyx_mori]
4247 O_BomoIG103823_5prime_partial:A_BomoIG_DN29870_c6_g5_i6
100bp
4248 O_BomoIG103824_5prime_partial:A_BomoIG_DN29870_c6_g5_i7
226bp
 zinc_finger_protein_837_[Bombyx_mori]
GO:0001964 P startle response
GO:0002121 P inter-male aggressive behavior
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007464 P R3/R4 cell fate commitment
GO:0007526 P larval somatic muscle development
GO:0008406 P gonad development
GO:0010906 P regulation of glucose metabolic process
GO:0016199 P axon midline choice point recognition
GO:0019730 P antimicrobial humoral response
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0031987 P locomotion involved in locomotory behavior
GO:0035167 P larval lymph gland hemopoiesis
GO:0044719 P regulation of imaginal disc-derived wing size
GO:0045467 P R7 cell development
GO:0045476 P nurse cell apoptotic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048813 P dendrite morphogenesis
GO:0048854 P brain morphogenesis
4249 O_BomoIG103825_5prime_partial:A_BomoIG_DN29870_c6_g5_i7
100bp
4250 O_BomoIG103826_complete:A_BomoIG_DN29870_c6_g3_i10
517bp
 serine_hydroxymethyltransferase_isoform_X1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004372 F glycine hydroxymethyltransferase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006544 P glycine metabolic process
GO:0006563 P L-serine metabolic process
GO:0006730 P one-carbon metabolic process
GO:0016740 F transferase activity
GO:0030170 F pyridoxal phosphate binding
GO:0035999 P tetrahydrofolate interconversion
GO:0046653 P tetrahydrofolate metabolic process
GO:0051289 P protein homotetramerization
4251 O_BomoIG103827_complete:A_BomoIG_DN29870_c6_g3_i10
123bp
4252 O_BomoIG103828_complete:A_BomoIG_DN29870_c6_g3_i11
251bp
 serine_hydroxymethyltransferase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004372 F glycine hydroxymethyltransferase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006544 P glycine metabolic process
GO:0006563 P L-serine metabolic process
GO:0006730 P one-carbon metabolic process
GO:0016740 F transferase activity
GO:0030170 F pyridoxal phosphate binding
GO:0035999 P tetrahydrofolate interconversion
GO:0046653 P tetrahydrofolate metabolic process
GO:0051289 P protein homotetramerization
4253 O_BomoIG103829_5prime_partial:A_BomoIG_DN29870_c6_g5_i8
203bp
 PREDICTED:_longitudinals_lacking_protein,_isoform_G_isoform_X5_[Papilio_polytes]
GO:0001964 P startle response
GO:0002121 P inter-male aggressive behavior
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007464 P R3/R4 cell fate commitment
GO:0007526 P larval somatic muscle development
GO:0008406 P gonad development
GO:0010906 P regulation of glucose metabolic process
GO:0016199 P axon midline choice point recognition
GO:0019730 P antimicrobial humoral response
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0031987 P locomotion involved in locomotory behavior
GO:0035167 P larval lymph gland hemopoiesis
GO:0044719 P regulation of imaginal disc-derived wing size
GO:0045467 P R7 cell development
GO:0045476 P nurse cell apoptotic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048813 P dendrite morphogenesis
GO:0048854 P brain morphogenesis
4254 O_BomoIG10382_5prime_partial:A_BomoIG_DN33710_c0_g2_i5
102bp
4255 O_BomoIG103830_5prime_partial:A_BomoIG_DN29870_c6_g5_i8
100bp
4256 O_BomoIG103831_internal:A_BomoIG_DN29840_c0_g1_i1
185bp
 cyclic_AMP_response_element-binding_protein_A_isoform_X3_[Bombyx_mori]
GO:0001158 F cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007431 P salivary gland development
GO:0007435 P salivary gland morphogenesis
GO:0008363 P larval chitin-based cuticle development
GO:0009953 P dorsal/ventral pattern formation
GO:0010906 P regulation of glucose metabolic process
GO:0035293 P chitin-based larval cuticle pattern formation
GO:0042803 F protein homodimerization activity
GO:0043565 F sequence-specific DNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
4257 O_BomoIG103832_internal:A_BomoIG_DN29840_c0_g1_i2
147bp
 cyclic_AMP_response_element-binding_protein_A_isoform_X2_[Bombyx_mori]
GO:0001158 F cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007431 P salivary gland development
GO:0007435 P salivary gland morphogenesis
GO:0008363 P larval chitin-based cuticle development
GO:0009953 P dorsal/ventral pattern formation
GO:0010906 P regulation of glucose metabolic process
GO:0035293 P chitin-based larval cuticle pattern formation
GO:0042803 F protein homodimerization activity
GO:0043565 F sequence-specific DNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
4258 O_BomoIG103833_complete:A_BomoIG_DN29840_c0_g1_i3
374bp
 cyclic_AMP_response_element-binding_protein_A_isoform_X2_[Bombyx_mori]
GO:0001158 F cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007431 P salivary gland development
GO:0007435 P salivary gland morphogenesis
GO:0008363 P larval chitin-based cuticle development
GO:0009953 P dorsal/ventral pattern formation
GO:0010906 P regulation of glucose metabolic process
GO:0035293 P chitin-based larval cuticle pattern formation
GO:0042803 F protein homodimerization activity
GO:0043565 F sequence-specific DNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
4259 O_BomoIG103834_complete:A_BomoIG_DN29840_c0_g1_i3
126bp
4260 O_BomoIG103835_5prime_partial:A_BomoIG_DN29890_c0_g2_i1
223bp
 E3_ubiquitin-protein_ligase_SH3RF1_isoform_X1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
previous next from show/104180

- SilkBase 1999-2023 -