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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1861 O_BomoIG101676_complete:A_BomoIG_DN30779_c0_g1_i5
332bp
 ubiquitin_carboxyl-terminal_hydrolase_16_[Bombyx_mori]
GO:0003713 F transcription coactivator activity
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0010468 P regulation of gene expression
GO:0016568 P chromatin organization
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0035522 P monoubiquitinated histone H2A deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0042393 F histone binding
GO:0043130 F ubiquitin binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045901 P positive regulation of translational elongation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0051289 P protein homotetramerization
GO:0051301 P cell division
GO:0051726 P regulation of cell cycle
GO:0070537 P histone H2A K63-linked deubiquitination
1862 O_BomoIG101677_complete:A_BomoIG_DN30779_c0_g1_i5
332bp
 ubiquitin_carboxyl-terminal_hydrolase_16_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
1863 O_BomoIG101678_complete:A_BomoIG_DN30779_c0_g1_i5
110bp
1864 O_BomoIG101679_complete:A_BomoIG_DN30779_c0_g1_i5
105bp
1865 O_BomoIG10167_complete:A_BomoIG_DN33791_c1_g1_i5
152bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
1866 O_BomoIG101680_3prime_partial:A_BomoIG_DN30779_c0_g5_i2
261bp
 dolichyldiphosphatase_1-like_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006486 P protein glycosylation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0047874 F dolichyldiphosphatase activity
1867 O_BomoIG101681_internal:A_BomoIG_DN30779_c0_g6_i1
195bp
 ribosome-releasing_factor_2,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003746 F translation elongation factor activity
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0006414 P translational elongation
GO:0032543 P mitochondrial translation
GO:0032790 P ribosome disassembly
1868 O_BomoIG101682_complete:A_BomoIG_DN30779_c0_g1_i6
441bp
 ubiquitin_carboxyl-terminal_hydrolase_16_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
1869 O_BomoIG101683_complete:A_BomoIG_DN30779_c0_g1_i6
390bp
 Golgi-specific_brefeldin_A-resistance_guanine_nucleotide_exchange_factor_1,_partial_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0002263 P cell activation involved in immune response
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005547 F phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0005788 C endoplasmic reticulum lumen
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0005801 C cis-Golgi network
GO:0005802 C trans-Golgi network
GO:0005811 C lipid droplet
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006892 P post-Golgi vesicle-mediated transport
GO:0006895 P Golgi to endosome transport
GO:0007030 P Golgi organization
GO:0007346 P regulation of mitotic cell cycle
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0030593 P neutrophil chemotaxis
GO:0031252 C cell leading edge
GO:0032012 P regulation of ARF protein signal transduction
GO:0034067 P protein localization to Golgi apparatus
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043547 P positive regulation of GTPase activity
GO:0048205 P COPI coating of Golgi vesicle
GO:0061162 P establishment of monopolar cell polarity
GO:0070973 P protein localization to endoplasmic reticulum exit site
GO:0080025 F phosphatidylinositol-3,5-bisphosphate binding
GO:0090166 P Golgi disassembly
GO:0097111 P endoplasmic reticulum-Golgi intermediate compartment organization
GO:1903409 P reactive oxygen species biosynthetic process
GO:1903420 P protein localization to endoplasmic reticulum tubular network
GO:2000008 P regulation of protein localization to cell surface
1870 O_BomoIG101684_complete:A_BomoIG_DN30779_c0_g1_i6
387bp
 Golgi-specific_brefeldin_A-resistance_guanine_nucleotide_exchange_factor_1,_partial_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0005811 C lipid droplet
GO:0006810 P transport
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0032012 P regulation of ARF protein signal transduction
GO:0043547 P positive regulation of GTPase activity
1871 O_BomoIG101685_complete:A_BomoIG_DN30779_c0_g1_i6
359bp
1872 O_BomoIG101686_complete:A_BomoIG_DN30779_c0_g1_i6
332bp
 ubiquitin_carboxyl-terminal_hydrolase_16_[Bombyx_mori]
GO:0003713 F transcription coactivator activity
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0010468 P regulation of gene expression
GO:0016568 P chromatin organization
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0035522 P monoubiquitinated histone H2A deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0042393 F histone binding
GO:0043130 F ubiquitin binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045901 P positive regulation of translational elongation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0051289 P protein homotetramerization
GO:0051301 P cell division
GO:0051726 P regulation of cell cycle
GO:0070537 P histone H2A K63-linked deubiquitination
1873 O_BomoIG101687_complete:A_BomoIG_DN30779_c0_g1_i6
123bp
1874 O_BomoIG101688_complete:A_BomoIG_DN30779_c0_g1_i6
119bp
1875 O_BomoIG101689_complete:A_BomoIG_DN30779_c0_g1_i6
116bp
1876 O_BomoIG10168_complete:A_BomoIG_DN33791_c1_g1_i5
100bp
1877 O_BomoIG101690_complete:A_BomoIG_DN30779_c0_g1_i6
105bp
1878 O_BomoIG101691_complete:A_BomoIG_DN30779_c0_g1_i7
761bp
 ubiquitin_carboxyl-terminal_hydrolase_16_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003713 F transcription coactivator activity
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008150 P biological_process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0010468 P regulation of gene expression
GO:0016568 P chromatin organization
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0035522 P monoubiquitinated histone H2A deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0042393 F histone binding
GO:0043130 F ubiquitin binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045901 P positive regulation of translational elongation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0051289 P protein homotetramerization
GO:0051301 P cell division
GO:0051726 P regulation of cell cycle
GO:0070537 P histone H2A K63-linked deubiquitination
1879 O_BomoIG101692_complete:A_BomoIG_DN30779_c0_g1_i7
390bp
 Golgi-specific_brefeldin_A-resistance_guanine_nucleotide_exchange_factor_1,_partial_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0002263 P cell activation involved in immune response
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005547 F phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0005788 C endoplasmic reticulum lumen
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0005801 C cis-Golgi network
GO:0005802 C trans-Golgi network
GO:0005811 C lipid droplet
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006892 P post-Golgi vesicle-mediated transport
GO:0006895 P Golgi to endosome transport
GO:0007030 P Golgi organization
GO:0007346 P regulation of mitotic cell cycle
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0030593 P neutrophil chemotaxis
GO:0031252 C cell leading edge
GO:0032012 P regulation of ARF protein signal transduction
GO:0034067 P protein localization to Golgi apparatus
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043547 P positive regulation of GTPase activity
GO:0048205 P COPI coating of Golgi vesicle
GO:0061162 P establishment of monopolar cell polarity
GO:0070973 P protein localization to endoplasmic reticulum exit site
GO:0080025 F phosphatidylinositol-3,5-bisphosphate binding
GO:0090166 P Golgi disassembly
GO:0097111 P endoplasmic reticulum-Golgi intermediate compartment organization
GO:1903409 P reactive oxygen species biosynthetic process
GO:1903420 P protein localization to endoplasmic reticulum tubular network
GO:2000008 P regulation of protein localization to cell surface
1880 O_BomoIG101693_complete:A_BomoIG_DN30779_c0_g1_i7
387bp
 Golgi-specific_brefeldin_A-resistance_guanine_nucleotide_exchange_factor_1,_partial_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0005811 C lipid droplet
GO:0006810 P transport
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0032012 P regulation of ARF protein signal transduction
GO:0043547 P positive regulation of GTPase activity
1881 O_BomoIG101694_complete:A_BomoIG_DN30779_c0_g1_i7
383bp
1882 O_BomoIG101695_complete:A_BomoIG_DN30779_c0_g1_i7
140bp
1883 O_BomoIG101696_complete:A_BomoIG_DN30779_c0_g1_i7
123bp
1884 O_BomoIG101697_complete:A_BomoIG_DN30779_c0_g1_i7
119bp
1885 O_BomoIG101698_complete:A_BomoIG_DN30779_c0_g1_i7
105bp
1886 O_BomoIG101699_complete:A_BomoIG_DN30779_c0_g1_i8
761bp
 ubiquitin_carboxyl-terminal_hydrolase_16_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003713 F transcription coactivator activity
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008150 P biological_process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0010468 P regulation of gene expression
GO:0016568 P chromatin organization
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0035522 P monoubiquitinated histone H2A deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0042393 F histone binding
GO:0043130 F ubiquitin binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045901 P positive regulation of translational elongation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0051289 P protein homotetramerization
GO:0051301 P cell division
GO:0051726 P regulation of cell cycle
GO:0070537 P histone H2A K63-linked deubiquitination
1887 O_BomoIG10169_internal:A_BomoIG_DN33791_c1_g1_i6
147bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
1888 O_BomoIG1016_complete:A_BomoIG_DN30229_c1_g1_i5
113bp
1889 O_BomoIG101700_complete:A_BomoIG_DN30779_c0_g1_i8
465bp
 Golgi-specific_brefeldin_A-resistance_guanine_nucleotide_exchange_factor_1,_partial_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0002263 P cell activation involved in immune response
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005547 F phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0005788 C endoplasmic reticulum lumen
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0005801 C cis-Golgi network
GO:0005802 C trans-Golgi network
GO:0005811 C lipid droplet
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006892 P post-Golgi vesicle-mediated transport
GO:0006895 P Golgi to endosome transport
GO:0007030 P Golgi organization
GO:0007346 P regulation of mitotic cell cycle
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0030593 P neutrophil chemotaxis
GO:0031252 C cell leading edge
GO:0032012 P regulation of ARF protein signal transduction
GO:0034067 P protein localization to Golgi apparatus
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043547 P positive regulation of GTPase activity
GO:0048205 P COPI coating of Golgi vesicle
GO:0061162 P establishment of monopolar cell polarity
GO:0070973 P protein localization to endoplasmic reticulum exit site
GO:0080025 F phosphatidylinositol-3,5-bisphosphate binding
GO:0090166 P Golgi disassembly
GO:0097111 P endoplasmic reticulum-Golgi intermediate compartment organization
GO:1903409 P reactive oxygen species biosynthetic process
GO:1903420 P protein localization to endoplasmic reticulum tubular network
GO:2000008 P regulation of protein localization to cell surface
1890 O_BomoIG101701_complete:A_BomoIG_DN30779_c0_g1_i8
387bp
 Golgi-specific_brefeldin_A-resistance_guanine_nucleotide_exchange_factor_1,_partial_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0005811 C lipid droplet
GO:0006810 P transport
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0032012 P regulation of ARF protein signal transduction
GO:0043547 P positive regulation of GTPase activity
previous next from show/104180

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