SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/104180
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1651 O_BomoIG101487_5prime_partial:A_BomoIG_DN30751_c4_g3_i8
166bp
1652 O_BomoIG101488_complete:A_BomoIG_DN30751_c4_g1_i5
267bp
 U5_small_nuclear_ribonucleoprotein_40_kDa_protein_[Bombyx_mori]
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005732 C sno(s)RNA-containing ribonucleoprotein complex
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1653 O_BomoIG101489_complete:A_BomoIG_DN30751_c4_g1_i5
115bp
 U5_small_nuclear_ribonucleoprotein_40_kDa_protein_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1654 O_BomoIG10148_5prime_partial:A_BomoIG_DN33770_c2_g1_i1
105bp
1655 O_BomoIG101490_3prime_partial:A_BomoIG_DN30751_c4_g1_i6
224bp
 nucleoporin-like_protein_amo1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0031965 C nuclear membrane
GO:0046872 F metal ion binding
GO:0051028 P mRNA transport
1656 O_BomoIG101491_complete:A_BomoIG_DN30751_c4_g3_i9
161bp
 hyccin_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0042552 P myelination
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0090002 P protein localization to plasma membrane
1657 O_BomoIG101492_5prime_partial:A_BomoIG_DN30751_c4_g3_i10
110bp
1658 O_BomoIG101493_3prime_partial:A_BomoIG_DN30751_c4_g3_i11
448bp
 hyccin_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0042552 P myelination
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0090002 P protein localization to plasma membrane
1659 O_BomoIG101494_5prime_partial:A_BomoIG_DN30751_c4_g3_i11
166bp
1660 O_BomoIG101495_complete:A_BomoIG_DN30751_c4_g3_i13
161bp
 hyccin_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0042552 P myelination
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0090002 P protein localization to plasma membrane
1661 O_BomoIG101496_3prime_partial:A_BomoIG_DN30758_c3_g1_i2
128bp
 reverse_transcriptase,_partial_[Bombyx_mori]
1662 O_BomoIG101497_complete:A_BomoIG_DN30758_c4_g2_i1
654bp
 ubiquitin_thioesterase_trabid_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0007010 P cytoskeleton organization
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016055 P Wnt signaling pathway
GO:0016477 P cell migration
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035523 P protein K29-linked deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0070536 P protein K63-linked deubiquitination
GO:0071947 P protein deubiquitination involved in ubiquitin-dependent protein catabolic process
GO:1990168 P protein K33-linked deubiquitination
1663 O_BomoIG101498_complete:A_BomoIG_DN30758_c4_g2_i3
654bp
 ubiquitin_thioesterase_trabid_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0007010 P cytoskeleton organization
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016055 P Wnt signaling pathway
GO:0016477 P cell migration
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035523 P protein K29-linked deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0070536 P protein K63-linked deubiquitination
GO:0071947 P protein deubiquitination involved in ubiquitin-dependent protein catabolic process
GO:1990168 P protein K33-linked deubiquitination
1664 O_BomoIG101499_complete:A_BomoIG_DN30758_c4_g3_i1
102bp
1665 O_BomoIG10149_complete:A_BomoIG_DN33770_c2_g1_i2
433bp
 protein_enabled_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0035091 F phosphatidylinositol binding
GO:0046872 F metal ion binding
1666 O_BomoIG1014_internal:A_BomoIG_DN30229_c1_g1_i5
391bp
 Golgi-specific_brefeldin_A-resistance_guanine_nucleotide_exchange_factor_1,_partial_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0002263 P cell activation involved in immune response
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005547 F phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0005788 C endoplasmic reticulum lumen
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0005801 C cis-Golgi network
GO:0005802 C trans-Golgi network
GO:0005811 C lipid droplet
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006892 P post-Golgi vesicle-mediated transport
GO:0006895 P Golgi to endosome transport
GO:0007030 P Golgi organization
GO:0007346 P regulation of mitotic cell cycle
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0030593 P neutrophil chemotaxis
GO:0031252 C cell leading edge
GO:0032012 P regulation of ARF protein signal transduction
GO:0034067 P protein localization to Golgi apparatus
GO:0042147 P retrograde transport, endosome to Golgi
GO:0043547 P positive regulation of GTPase activity
GO:0048205 P COPI coating of Golgi vesicle
GO:0061162 P establishment of monopolar cell polarity
GO:0070973 P protein localization to endoplasmic reticulum exit site
GO:0080025 F phosphatidylinositol-3,5-bisphosphate binding
GO:0090166 P Golgi disassembly
GO:0097111 P endoplasmic reticulum-Golgi intermediate compartment organization
GO:1903409 P reactive oxygen species biosynthetic process
GO:1903420 P protein localization to endoplasmic reticulum tubular network
GO:2000008 P regulation of protein localization to cell surface
1667 O_BomoIG101500_complete:A_BomoIG_DN30758_c4_g2_i4
610bp
 ubiquitin_thioesterase_trabid_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0007010 P cytoskeleton organization
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016055 P Wnt signaling pathway
GO:0016477 P cell migration
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035523 P protein K29-linked deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0070536 P protein K63-linked deubiquitination
GO:0071947 P protein deubiquitination involved in ubiquitin-dependent protein catabolic process
GO:1990168 P protein K33-linked deubiquitination
1668 O_BomoIG101501_complete:A_BomoIG_DN30758_c4_g2_i6
654bp
 ubiquitin_thioesterase_trabid_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0007010 P cytoskeleton organization
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016055 P Wnt signaling pathway
GO:0016477 P cell migration
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035523 P protein K29-linked deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0070536 P protein K63-linked deubiquitination
GO:0071947 P protein deubiquitination involved in ubiquitin-dependent protein catabolic process
GO:1990168 P protein K33-linked deubiquitination
1669 O_BomoIG101502_complete:A_BomoIG_DN30758_c4_g2_i7
654bp
 ubiquitin_thioesterase_trabid_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0007010 P cytoskeleton organization
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016055 P Wnt signaling pathway
GO:0016477 P cell migration
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035523 P protein K29-linked deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0070536 P protein K63-linked deubiquitination
GO:0071947 P protein deubiquitination involved in ubiquitin-dependent protein catabolic process
GO:1990168 P protein K33-linked deubiquitination
1670 O_BomoIG101503_complete:A_BomoIG_DN30758_c4_g6_i1
149bp
 male-enhanced_antigen_1_[Bombyx_mori]
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0030154 P cell differentiation
1671 O_BomoIG101504_complete:A_BomoIG_DN30758_c4_g2_i8
654bp
 ubiquitin_thioesterase_trabid_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0007010 P cytoskeleton organization
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016055 P Wnt signaling pathway
GO:0016477 P cell migration
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035523 P protein K29-linked deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0070536 P protein K63-linked deubiquitination
GO:0071947 P protein deubiquitination involved in ubiquitin-dependent protein catabolic process
GO:1990168 P protein K33-linked deubiquitination
1672 O_BomoIG101505_complete:A_BomoIG_DN30758_c4_g2_i9
654bp
 ubiquitin_thioesterase_trabid_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0007010 P cytoskeleton organization
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016055 P Wnt signaling pathway
GO:0016477 P cell migration
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035523 P protein K29-linked deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0070536 P protein K63-linked deubiquitination
GO:0071947 P protein deubiquitination involved in ubiquitin-dependent protein catabolic process
GO:1990168 P protein K33-linked deubiquitination
1673 O_BomoIG101506_complete:A_BomoIG_DN30758_c4_g6_i2
149bp
 male-enhanced_antigen_1_[Bombyx_mori]
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0030154 P cell differentiation
1674 O_BomoIG101507_complete:A_BomoIG_DN30758_c4_g2_i10
654bp
 ubiquitin_thioesterase_trabid_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0007010 P cytoskeleton organization
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016055 P Wnt signaling pathway
GO:0016477 P cell migration
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035523 P protein K29-linked deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0070536 P protein K63-linked deubiquitination
GO:0071947 P protein deubiquitination involved in ubiquitin-dependent protein catabolic process
GO:1990168 P protein K33-linked deubiquitination
1675 O_BomoIG101508_complete:A_BomoIG_DN30758_c4_g2_i11
654bp
 ubiquitin_thioesterase_trabid_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0007010 P cytoskeleton organization
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016055 P Wnt signaling pathway
GO:0016477 P cell migration
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035523 P protein K29-linked deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0070536 P protein K63-linked deubiquitination
GO:0071947 P protein deubiquitination involved in ubiquitin-dependent protein catabolic process
GO:1990168 P protein K33-linked deubiquitination
1676 O_BomoIG101509_complete:A_BomoIG_DN30758_c4_g2_i12
654bp
 ubiquitin_thioesterase_trabid_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0007010 P cytoskeleton organization
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016055 P Wnt signaling pathway
GO:0016477 P cell migration
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035523 P protein K29-linked deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0070536 P protein K63-linked deubiquitination
GO:0071947 P protein deubiquitination involved in ubiquitin-dependent protein catabolic process
GO:1990168 P protein K33-linked deubiquitination
1677 O_BomoIG10150_5prime_partial:A_BomoIG_DN33770_c2_g1_i2
105bp
1678 O_BomoIG101510_complete:A_BomoIG_DN30758_c4_g3_i3
139bp
 uncharacterized_protein_LOC101742336_[Bombyx_mori]
1679 O_BomoIG101511_complete:A_BomoIG_DN30758_c4_g3_i4
129bp
 uncharacterized_protein_LOC101742336_[Bombyx_mori]
1680 O_BomoIG101512_complete:A_BomoIG_DN30758_c4_g3_i4
102bp
previous next from show/104180

- SilkBase 1999-2023 -