SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/104180
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1261 O_BomoIG101135_complete:A_BomoIG_DN30753_c4_g10_i11
171bp
 diamine_acetyltransferase_2_[Bombyx_mori]
GO:0004145 F diamine N-acetyltransferase activity
GO:0005737 C cytoplasm
GO:0008080 F N-acetyltransferase activity
GO:0009447 P putrescine catabolic process
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
1262 O_BomoIG101136_complete:A_BomoIG_DN30753_c4_g10_i12
132bp
 diamine_acetyltransferase_2_[Bombyx_mori]
GO:0004145 F diamine N-acetyltransferase activity
GO:0005737 C cytoplasm
GO:0008080 F N-acetyltransferase activity
GO:0009447 P putrescine catabolic process
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
1263 O_BomoIG101137_complete:A_BomoIG_DN30748_c4_g1_i1
194bp
 coiled-coil_domain-containing_protein_43_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
1264 O_BomoIG101138_3prime_partial:A_BomoIG_DN30748_c4_g4_i1
286bp
 secretion-regulating_guanine_nucleotide_exchange_factor_isoform_X1_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0043547 P positive regulation of GTPase activity
GO:0050709 P negative regulation of protein secretion
1265 O_BomoIG101139_complete:A_BomoIG_DN30748_c4_g5_i1
195bp
 zinc_finger_CCHC_domain-containing_protein_24_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005575 C cellular_component
GO:0008270 F zinc ion binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
1266 O_BomoIG10113_complete:A_BomoIG_DN33700_c1_g5_i4
189bp
 GPN-loop_GTPase_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0005525 F GTP binding
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0043234 C protein-containing complex
1267 O_BomoIG101140_complete:A_BomoIG_DN30748_c4_g1_i2
200bp
 coiled-coil_domain-containing_protein_43_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
1268 O_BomoIG101141_complete:A_BomoIG_DN30748_c4_g1_i2
128bp
1269 O_BomoIG101142_complete:A_BomoIG_DN30748_c4_g5_i3
193bp
 uncharacterized_protein_LOC101741563_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005575 C cellular_component
GO:0008270 F zinc ion binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
1270 O_BomoIG101143_complete:A_BomoIG_DN30748_c4_g1_i3
200bp
 coiled-coil_domain-containing_protein_43_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
1271 O_BomoIG101144_complete:A_BomoIG_DN30748_c4_g1_i3
128bp
1272 O_BomoIG101145_3prime_partial:A_BomoIG_DN30748_c4_g4_i2
145bp
 secretion-regulating_guanine_nucleotide_exchange_factor_isoform_X1_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
1273 O_BomoIG101146_complete:A_BomoIG_DN30748_c4_g1_i7
194bp
 coiled-coil_domain-containing_protein_43_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
1274 O_BomoIG101147_complete:A_BomoIG_DN30760_c5_g2_i1
453bp
 cell_cycle_checkpoint_protein_RAD17_isoform_X1_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0000166 F nucleotide binding
GO:0003689 F DNA clamp loader activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0031389 C Rad17 RFC-like complex
1275 O_BomoIG101148_5prime_partial:A_BomoIG_DN30760_c5_g2_i2
114bp
 cell_cycle_checkpoint_protein_RAD17_isoform_X3_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0000166 F nucleotide binding
GO:0003689 F DNA clamp loader activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0031389 C Rad17 RFC-like complex
1276 O_BomoIG101149_complete:A_BomoIG_DN30760_c5_g2_i2
105bp
 cell_cycle_checkpoint_protein_RAD17_isoform_X3_[Bombyx_mori]
1277 O_BomoIG10114_5prime_partial:A_BomoIG_DN33700_c1_g1_i5
106bp
1278 O_BomoIG101150_complete:A_BomoIG_DN30760_c5_g2_i3
461bp
 cell_cycle_checkpoint_protein_RAD17_isoform_X1_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0000166 F nucleotide binding
GO:0003689 F DNA clamp loader activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0031389 C Rad17 RFC-like complex
1279 O_BomoIG101151_complete:A_BomoIG_DN30760_c5_g3_i1
289bp
 uncharacterized_protein_LOC105842162_isoform_X2_[Bombyx_mori]
1280 O_BomoIG101152_complete:A_BomoIG_DN30760_c5_g2_i4
488bp
 cell_cycle_checkpoint_protein_RAD17_isoform_X1_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0000166 F nucleotide binding
GO:0003689 F DNA clamp loader activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0031389 C Rad17 RFC-like complex
1281 O_BomoIG101153_complete:A_BomoIG_DN30760_c5_g2_i5
285bp
 cell_cycle_checkpoint_protein_RAD17_isoform_X2_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0000166 F nucleotide binding
GO:0003689 F DNA clamp loader activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0031389 C Rad17 RFC-like complex
1282 O_BomoIG101154_complete:A_BomoIG_DN30760_c5_g2_i6
105bp
 cell_cycle_checkpoint_protein_RAD17_isoform_X3_[Bombyx_mori]
1283 O_BomoIG101155_5prime_partial:A_BomoIG_DN30760_c5_g2_i7
316bp
 cell_cycle_checkpoint_protein_RAD17_isoform_X2_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0000166 F nucleotide binding
GO:0000781 C chromosome, telomeric region
GO:0003689 F DNA clamp loader activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007093 P mitotic cell cycle checkpoint signaling
GO:0007275 P multicellular organism development
GO:0008156 P negative regulation of DNA replication
GO:0031389 C Rad17 RFC-like complex
GO:0042325 P regulation of phosphorylation
1284 O_BomoIG101156_3prime_partial:A_BomoIG_DN30760_c5_g6_i1
631bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
1285 O_BomoIG101157_complete:A_BomoIG_DN30760_c5_g6_i2
555bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
1286 O_BomoIG101158_complete:A_BomoIG_DN30760_c5_g2_i9
285bp
 cell_cycle_checkpoint_protein_RAD17_isoform_X2_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0000166 F nucleotide binding
GO:0003689 F DNA clamp loader activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0031389 C Rad17 RFC-like complex
1287 O_BomoIG101159_complete:A_BomoIG_DN30760_c5_g2_i9
105bp
 cell_cycle_checkpoint_protein_RAD17_isoform_X3_[Bombyx_mori]
1288 O_BomoIG10115_complete:A_BomoIG_DN33700_c1_g3_i2
132bp
1289 O_BomoIG101160_complete:A_BomoIG_DN30760_c5_g2_i10
461bp
 cell_cycle_checkpoint_protein_RAD17_isoform_X1_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0000166 F nucleotide binding
GO:0003689 F DNA clamp loader activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0031389 C Rad17 RFC-like complex
1290 O_BomoIG101161_complete:A_BomoIG_DN30760_c5_g2_i11
440bp
 cell_cycle_checkpoint_protein_RAD17_isoform_X3_[Bombyx_mori]
GO:0000076 P DNA replication checkpoint signaling
GO:0000077 P DNA damage checkpoint signaling
GO:0000166 F nucleotide binding
GO:0000781 C chromosome, telomeric region
GO:0003689 F DNA clamp loader activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007093 P mitotic cell cycle checkpoint signaling
GO:0008156 P negative regulation of DNA replication
GO:0031389 C Rad17 RFC-like complex
GO:0042325 P regulation of phosphorylation
GO:1901796 P regulation of signal transduction by p53 class mediator
previous next from show/104180

- SilkBase 1999-2023 -