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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
781 O_BomoBR100703_5prime_partial:A_BomoBR_DN30709_c4_g3_i5
1101bp
 LOW_QUALITY_PROTEIN:_nucleoprotein_TPR_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0003677 F DNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005652 C nuclear lamina
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005719 C euchromatin
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006325 P chromatin organization
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007094 P mitotic spindle assembly checkpoint signaling
GO:0007346 P regulation of mitotic cell cycle
GO:0009408 P response to heat
GO:0010965 P regulation of mitotic sister chromatid separation
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016568 P chromatin organization
GO:0030496 C midbody
GO:0031490 F chromatin DNA binding
GO:0031965 C nuclear membrane
GO:0032888 P regulation of mitotic spindle elongation
GO:0034399 C nuclear periphery
GO:0034401 P obsolete chromatin organization involved in regulation of transcription
GO:0034976 P response to endoplasmic reticulum stress
GO:0042405 C nuclear inclusion body
GO:0043021 F ribonucleoprotein complex binding
GO:0045840 P positive regulation of mitotic nuclear division
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051028 P mRNA transport
GO:0051225 P spindle assembly
GO:0051233 C spindle midzone
GO:0051301 P cell division
GO:0051781 P positive regulation of cell division
GO:0051983 P regulation of chromosome segregation
GO:0060236 P regulation of mitotic spindle organization
GO:0070090 C metaphase plate
GO:0072686 C mitotic spindle
GO:0090235 P regulation of metaphase plate congression
GO:0090267 P positive regulation of mitotic cell cycle spindle assembly checkpoint
GO:0090316 P positive regulation of intracellular protein transport
GO:1901673 P regulation of mitotic spindle assembly
GO:1990047 C spindle matrix
782 O_BomoBR100704_complete:A_BomoBR_DN30709_c4_g3_i5
122bp
783 O_BomoBR100705_complete:A_BomoBR_DN30709_c4_g3_i5
105bp
784 O_BomoBR100706_complete:A_BomoBR_DN30709_c4_g8_i1
114bp
 ER_membrane_protein_complex_subunit_6_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0003674 F molecular_function
GO:0005783 C endoplasmic reticulum
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0034975 P protein folding in endoplasmic reticulum
GO:0072546 C EMC complex
GO:0097631 C integral component of omegasome membrane
785 O_BomoBR100707_5prime_partial:A_BomoBR_DN30709_c4_g3_i6
958bp
 LOW_QUALITY_PROTEIN:_nucleoprotein_TPR_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0003677 F DNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005652 C nuclear lamina
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005719 C euchromatin
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006325 P chromatin organization
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007094 P mitotic spindle assembly checkpoint signaling
GO:0007346 P regulation of mitotic cell cycle
GO:0009408 P response to heat
GO:0010965 P regulation of mitotic sister chromatid separation
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016568 P chromatin organization
GO:0030496 C midbody
GO:0031490 F chromatin DNA binding
GO:0031965 C nuclear membrane
GO:0032888 P regulation of mitotic spindle elongation
GO:0034399 C nuclear periphery
GO:0034401 P obsolete chromatin organization involved in regulation of transcription
GO:0034976 P response to endoplasmic reticulum stress
GO:0042405 C nuclear inclusion body
GO:0043021 F ribonucleoprotein complex binding
GO:0045840 P positive regulation of mitotic nuclear division
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051028 P mRNA transport
GO:0051225 P spindle assembly
GO:0051233 C spindle midzone
GO:0051301 P cell division
GO:0051781 P positive regulation of cell division
GO:0051983 P regulation of chromosome segregation
GO:0060236 P regulation of mitotic spindle organization
GO:0070090 C metaphase plate
GO:0072686 C mitotic spindle
GO:0090235 P regulation of metaphase plate congression
GO:0090267 P positive regulation of mitotic cell cycle spindle assembly checkpoint
GO:0090316 P positive regulation of intracellular protein transport
GO:1901673 P regulation of mitotic spindle assembly
GO:1990047 C spindle matrix
786 O_BomoBR100708_complete:A_BomoBR_DN30709_c4_g3_i6
122bp
787 O_BomoBR100709_complete:A_BomoBR_DN30709_c4_g3_i7
143bp
788 O_BomoBR10070_internal:A_BomoBR_DN31320_c0_g3_i8
517bp
 SCY1-like_protein_2_[Bombyx_mori]
GO:0002092 P positive regulation of receptor internalization
GO:0004672 F protein kinase activity
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0006468 P protein phosphorylation
GO:0008333 P endosome to lysosome transport
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0030136 C clathrin-coated vesicle
GO:0031410 C cytoplasmic vesicle
GO:0048471 C perinuclear region of cytoplasm
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:2000286 P receptor internalization involved in canonical Wnt signaling pathway
GO:2000370 P positive regulation of clathrin-dependent endocytosis
789 O_BomoBR100710_5prime_partial:A_BomoBR_DN30709_c4_g3_i8
1115bp
 LOW_QUALITY_PROTEIN:_nucleoprotein_TPR_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0003677 F DNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005652 C nuclear lamina
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005719 C euchromatin
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006325 P chromatin organization
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007094 P mitotic spindle assembly checkpoint signaling
GO:0007346 P regulation of mitotic cell cycle
GO:0009408 P response to heat
GO:0010965 P regulation of mitotic sister chromatid separation
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016568 P chromatin organization
GO:0030496 C midbody
GO:0031490 F chromatin DNA binding
GO:0031965 C nuclear membrane
GO:0032888 P regulation of mitotic spindle elongation
GO:0034399 C nuclear periphery
GO:0034401 P obsolete chromatin organization involved in regulation of transcription
GO:0034976 P response to endoplasmic reticulum stress
GO:0042405 C nuclear inclusion body
GO:0043021 F ribonucleoprotein complex binding
GO:0045840 P positive regulation of mitotic nuclear division
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051028 P mRNA transport
GO:0051225 P spindle assembly
GO:0051233 C spindle midzone
GO:0051301 P cell division
GO:0051781 P positive regulation of cell division
GO:0051983 P regulation of chromosome segregation
GO:0060236 P regulation of mitotic spindle organization
GO:0070090 C metaphase plate
GO:0072686 C mitotic spindle
GO:0090235 P regulation of metaphase plate congression
GO:0090267 P positive regulation of mitotic cell cycle spindle assembly checkpoint
GO:0090316 P positive regulation of intracellular protein transport
GO:1901673 P regulation of mitotic spindle assembly
GO:1990047 C spindle matrix
790 O_BomoBR100711_complete:A_BomoBR_DN30709_c4_g3_i8
122bp
791 O_BomoBR100712_5prime_partial:A_BomoBR_DN30709_c4_g3_i9
135bp
 LOW_QUALITY_PROTEIN:_nucleoprotein_TPR_[Bombyx_mori]
792 O_BomoBR100713_3prime_partial:A_BomoBR_DN30764_c1_g1_i1
302bp
 LOW_QUALITY_PROTEIN:_actin-binding_LIM_protein_2_[Bombyx_mori]
GO:0001725 C stress fiber
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0007010 P cytoskeleton organization
GO:0007601 P visual perception
GO:0008270 F zinc ion binding
GO:0009887 P animal organ morphogenesis
GO:0015629 C actin cytoskeleton
GO:0030027 C lamellipodium
GO:0030032 P lamellipodium assembly
GO:0042384 P cilium assembly
GO:0046872 F metal ion binding
793 O_BomoBR100714_5prime_partial:A_BomoBR_DN30764_c1_g1_i1
103bp
794 O_BomoBR100715_internal:A_BomoBR_DN30764_c1_g2_i2
479bp
 myosin-11-like_[Bombyx_mori]
795 O_BomoBR100716_3prime_partial:A_BomoBR_DN30764_c1_g2_i2
272bp
796 O_BomoBR100717_3prime_partial:A_BomoBR_DN30764_c1_g1_i2
235bp
 LOW_QUALITY_PROTEIN:_actin-binding_LIM_protein_2_[Bombyx_mori]
GO:0001725 C stress fiber
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0007010 P cytoskeleton organization
GO:0007601 P visual perception
GO:0008270 F zinc ion binding
GO:0009887 P animal organ morphogenesis
GO:0015629 C actin cytoskeleton
GO:0030027 C lamellipodium
GO:0030032 P lamellipodium assembly
GO:0042384 P cilium assembly
GO:0046872 F metal ion binding
797 O_BomoBR100718_5prime_partial:A_BomoBR_DN30764_c1_g1_i2
103bp
798 O_BomoBR100719_internal:A_BomoBR_DN30764_c1_g4_i3
409bp
 LOW_QUALITY_PROTEIN:_actin-binding_LIM_protein_2_[Bombyx_mori]
GO:0001725 C stress fiber
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0007010 P cytoskeleton organization
GO:0007601 P visual perception
GO:0008270 F zinc ion binding
GO:0009887 P animal organ morphogenesis
GO:0015629 C actin cytoskeleton
GO:0030027 C lamellipodium
GO:0030032 P lamellipodium assembly
GO:0042384 P cilium assembly
GO:0046872 F metal ion binding
799 O_BomoBR10071_complete:A_BomoBR_DN31320_c0_g3_i8
106bp
800 O_BomoBR100720_5prime_partial:A_BomoBR_DN30764_c1_g2_i3
401bp
 myosin-11-like_[Bombyx_mori]
801 O_BomoBR100721_3prime_partial:A_BomoBR_DN30764_c1_g2_i3
272bp
802 O_BomoBR100722_5prime_partial:A_BomoBR_DN30764_c1_g4_i5
411bp
 LOW_QUALITY_PROTEIN:_actin-binding_LIM_protein_2_[Bombyx_mori]
GO:0001725 C stress fiber
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0007010 P cytoskeleton organization
GO:0007601 P visual perception
GO:0008270 F zinc ion binding
GO:0009887 P animal organ morphogenesis
GO:0015629 C actin cytoskeleton
GO:0030027 C lamellipodium
GO:0030032 P lamellipodium assembly
GO:0042384 P cilium assembly
GO:0046872 F metal ion binding
803 O_BomoBR100723_5prime_partial:A_BomoBR_DN30764_c1_g4_i5
156bp
804 O_BomoBR100724_5prime_partial:A_BomoBR_DN30764_c1_g4_i6
442bp
 LOW_QUALITY_PROTEIN:_actin-binding_LIM_protein_2_[Bombyx_mori]
GO:0001725 C stress fiber
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0007010 P cytoskeleton organization
GO:0007601 P visual perception
GO:0008270 F zinc ion binding
GO:0009887 P animal organ morphogenesis
GO:0015629 C actin cytoskeleton
GO:0030027 C lamellipodium
GO:0030032 P lamellipodium assembly
GO:0042384 P cilium assembly
GO:0046872 F metal ion binding
805 O_BomoBR100725_5prime_partial:A_BomoBR_DN30764_c1_g4_i7
435bp
 LOW_QUALITY_PROTEIN:_actin-binding_LIM_protein_2_[Bombyx_mori]
GO:0001725 C stress fiber
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0007010 P cytoskeleton organization
GO:0007601 P visual perception
GO:0008270 F zinc ion binding
GO:0009887 P animal organ morphogenesis
GO:0015629 C actin cytoskeleton
GO:0030027 C lamellipodium
GO:0030032 P lamellipodium assembly
GO:0042384 P cilium assembly
GO:0046872 F metal ion binding
806 O_BomoBR100726_complete:A_BomoBR_DN30764_c1_g4_i10
250bp
 LOW_QUALITY_PROTEIN:_actin-binding_LIM_protein_2_[Bombyx_mori]
GO:0001725 C stress fiber
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0007010 P cytoskeleton organization
GO:0007601 P visual perception
GO:0008270 F zinc ion binding
GO:0009887 P animal organ morphogenesis
GO:0015629 C actin cytoskeleton
GO:0030027 C lamellipodium
GO:0030032 P lamellipodium assembly
GO:0042384 P cilium assembly
GO:0046872 F metal ion binding
807 O_BomoBR100727_complete:A_BomoBR_DN30764_c1_g15_i1
199bp
808 O_BomoBR100728_5prime_partial:A_BomoBR_DN30764_c1_g2_i4
486bp
 myosin-11-like_[Bombyx_mori]
809 O_BomoBR100729_3prime_partial:A_BomoBR_DN30764_c1_g2_i4
272bp
810 O_BomoBR10072_complete:A_BomoBR_DN31320_c0_g3_i9
445bp
 SCY1-like_protein_2_[Bombyx_mori]
GO:0002092 P positive regulation of receptor internalization
GO:0004672 F protein kinase activity
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0006468 P protein phosphorylation
GO:0008333 P endosome to lysosome transport
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0030136 C clathrin-coated vesicle
GO:0031410 C cytoplasmic vesicle
GO:0048471 C perinuclear region of cytoplasm
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:2000286 P receptor internalization involved in canonical Wnt signaling pathway
GO:2000370 P positive regulation of clathrin-dependent endocytosis
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