Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
1501	O_BomoBR101351_5prime_partial:A_BomoBR_DN29821_c3_g2_i7 117bp	Bomo_Chr18
1502	O_BomoBR101352_complete:A_BomoBR_DN29821_c3_g2_i8 125bp	Bomo_Chr18
1503	O_BomoBR101353_complete:A_BomoBR_DN29821_c3_g2_i8 118bp	Bomo_Chr18	forkhead_box_protein_N3_[Bombyx_mori]
1504	O_BomoBR101354_complete:A_BomoBR_DN29865_c0_g1_i2 128bp	Bomo_Chr15	RNA-binding_protein_1_[Bombyx_mori]
1505	O_BomoBR101355_complete:A_BomoBR_DN29865_c0_g1_i2 124bp	Bomo_Chr15	UDP-xylose_and_UDP-N-acetylglucosamine_transporter_isoform_X3_[Bombyx_mori]	GO:0000139 C Golgi membrane GO:0005457 F GDP-fucose transmembrane transporter activity GO:0005462 F UDP-N-acetylglucosamine transmembrane transporter activity GO:0005464 F UDP-xylose transmembrane transporter activity GO:0005783 C endoplasmic reticulum GO:0005794 C Golgi apparatus GO:0006111 P regulation of gluconeogenesis GO:0006810 P transport GO:0008643 P carbohydrate transport GO:0015783 P GDP-fucose transmembrane transport GO:0015788 P UDP-N-acetylglucosamine transmembrane transport GO:0015790 P UDP-xylose transmembrane transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0030173 C integral component of Golgi membrane GO:0030176 C integral component of endoplasmic reticulum membrane GO:0055085 P transmembrane transport GO:1990569 P UDP-N-acetylglucosamine transmembrane transport
1506	O_BomoBR101356_complete:A_BomoBR_DN29865_c0_g1_i2 116bp	Bomo_Chr15	UDP-xylose_and_UDP-N-acetylglucosamine_transporter_isoform_X3_[Bombyx_mori]	GO:0000139 C Golgi membrane GO:0005457 F GDP-fucose transmembrane transporter activity GO:0005462 F UDP-N-acetylglucosamine transmembrane transporter activity GO:0005464 F UDP-xylose transmembrane transporter activity GO:0005794 C Golgi apparatus GO:0006810 P transport GO:0008643 P carbohydrate transport GO:0015783 P GDP-fucose transmembrane transport GO:0015790 P UDP-xylose transmembrane transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0030173 C integral component of Golgi membrane GO:0030176 C integral component of endoplasmic reticulum membrane GO:0055085 P transmembrane transport GO:1990569 P UDP-N-acetylglucosamine transmembrane transport
1507	O_BomoBR101357_complete:A_BomoBR_DN29865_c0_g1_i3 209bp	Bomo_Chr15	UDP-xylose_and_UDP-N-acetylglucosamine_transporter_isoform_X1_[Bombyx_mori]	GO:0000139 C Golgi membrane GO:0005457 F GDP-fucose transmembrane transporter activity GO:0005462 F UDP-N-acetylglucosamine transmembrane transporter activity GO:0005464 F UDP-xylose transmembrane transporter activity GO:0005794 C Golgi apparatus GO:0006810 P transport GO:0008643 P carbohydrate transport GO:0015783 P GDP-fucose transmembrane transport GO:0015790 P UDP-xylose transmembrane transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0030173 C integral component of Golgi membrane GO:0030176 C integral component of endoplasmic reticulum membrane GO:0055085 P transmembrane transport GO:1990569 P UDP-N-acetylglucosamine transmembrane transport
1508	O_BomoBR101358_complete:A_BomoBR_DN29865_c0_g1_i3 157bp	Bomo_Chr15	RNA-binding_protein_1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000381 P regulation of alternative mRNA splicing, via spliceosome GO:0000398 P mRNA splicing, via spliceosome GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0003729 F mRNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0006376 P mRNA splice site selection GO:0006397 P mRNA processing GO:0008380 P RNA splicing GO:0010468 P regulation of gene expression GO:0031440 P regulation of mRNA 3'-end processing GO:0035327 C euchromatin GO:0045292 P mRNA cis splicing, via spliceosome
1509	O_BomoBR101359_complete:A_BomoBR_DN29865_c0_g1_i3 124bp	Bomo_Chr15	UDP-xylose_and_UDP-N-acetylglucosamine_transporter_isoform_X3_[Bombyx_mori]	GO:0000139 C Golgi membrane GO:0005457 F GDP-fucose transmembrane transporter activity GO:0005462 F UDP-N-acetylglucosamine transmembrane transporter activity GO:0005464 F UDP-xylose transmembrane transporter activity GO:0005783 C endoplasmic reticulum GO:0005794 C Golgi apparatus GO:0006111 P regulation of gluconeogenesis GO:0006810 P transport GO:0008643 P carbohydrate transport GO:0015783 P GDP-fucose transmembrane transport GO:0015788 P UDP-N-acetylglucosamine transmembrane transport GO:0015790 P UDP-xylose transmembrane transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0030173 C integral component of Golgi membrane GO:0030176 C integral component of endoplasmic reticulum membrane GO:0055085 P transmembrane transport GO:1990569 P UDP-N-acetylglucosamine transmembrane transport
1510	O_BomoBR10135_complete:A_BomoBR_DN31333_c3_g2_i3 316bp	Bomo_Chr20
1511	O_BomoBR101360_complete:A_BomoBR_DN29865_c0_g1_i4 160bp	Bomo_Chr15	RNA-binding_protein_1_isoform_X1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000381 P regulation of alternative mRNA splicing, via spliceosome GO:0000398 P mRNA splicing, via spliceosome GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0003729 F mRNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0006376 P mRNA splice site selection GO:0006397 P mRNA processing GO:0008380 P RNA splicing GO:0010468 P regulation of gene expression GO:0031440 P regulation of mRNA 3'-end processing GO:0035327 C euchromatin GO:0045292 P mRNA cis splicing, via spliceosome
1512	O_BomoBR101361_complete:A_BomoBR_DN29865_c0_g1_i5 212bp	Bomo_Chr15	UDP-xylose_and_UDP-N-acetylglucosamine_transporter_isoform_X3_[Bombyx_mori]	GO:0000139 C Golgi membrane GO:0005457 F GDP-fucose transmembrane transporter activity GO:0005462 F UDP-N-acetylglucosamine transmembrane transporter activity GO:0005464 F UDP-xylose transmembrane transporter activity GO:0005794 C Golgi apparatus GO:0006810 P transport GO:0008643 P carbohydrate transport GO:0015783 P GDP-fucose transmembrane transport GO:0015790 P UDP-xylose transmembrane transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0030173 C integral component of Golgi membrane GO:0030176 C integral component of endoplasmic reticulum membrane GO:0055085 P transmembrane transport GO:1990569 P UDP-N-acetylglucosamine transmembrane transport
1513	O_BomoBR101362_complete:A_BomoBR_DN29865_c0_g1_i5 157bp	Bomo_Chr15	RNA-binding_protein_1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000381 P regulation of alternative mRNA splicing, via spliceosome GO:0000398 P mRNA splicing, via spliceosome GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0003729 F mRNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0006376 P mRNA splice site selection GO:0006397 P mRNA processing GO:0008380 P RNA splicing GO:0010468 P regulation of gene expression GO:0031440 P regulation of mRNA 3'-end processing GO:0035327 C euchromatin GO:0045292 P mRNA cis splicing, via spliceosome
1514	O_BomoBR101363_complete:A_BomoBR_DN29865_c0_g1_i6 212bp	Bomo_Chr15	UDP-xylose_and_UDP-N-acetylglucosamine_transporter_isoform_X3_[Bombyx_mori]	GO:0000139 C Golgi membrane GO:0005457 F GDP-fucose transmembrane transporter activity GO:0005462 F UDP-N-acetylglucosamine transmembrane transporter activity GO:0005464 F UDP-xylose transmembrane transporter activity GO:0005794 C Golgi apparatus GO:0006810 P transport GO:0008643 P carbohydrate transport GO:0015783 P GDP-fucose transmembrane transport GO:0015790 P UDP-xylose transmembrane transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0030173 C integral component of Golgi membrane GO:0030176 C integral component of endoplasmic reticulum membrane GO:0055085 P transmembrane transport GO:1990569 P UDP-N-acetylglucosamine transmembrane transport
1515	O_BomoBR101364_complete:A_BomoBR_DN29865_c0_g1_i6 157bp	Bomo_Chr15	RNA-binding_protein_1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000381 P regulation of alternative mRNA splicing, via spliceosome GO:0000398 P mRNA splicing, via spliceosome GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0003729 F mRNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0006376 P mRNA splice site selection GO:0006397 P mRNA processing GO:0008380 P RNA splicing GO:0010468 P regulation of gene expression GO:0031440 P regulation of mRNA 3'-end processing GO:0035327 C euchromatin GO:0045292 P mRNA cis splicing, via spliceosome
1516	O_BomoBR101365_complete:A_BomoBR_DN29865_c0_g1_i7 160bp	Bomo_Chr15	RNA-binding_protein_1_isoform_X1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000381 P regulation of alternative mRNA splicing, via spliceosome GO:0000398 P mRNA splicing, via spliceosome GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0003729 F mRNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0006376 P mRNA splice site selection GO:0006397 P mRNA processing GO:0008380 P RNA splicing GO:0010468 P regulation of gene expression GO:0031440 P regulation of mRNA 3'-end processing GO:0035327 C euchromatin GO:0045292 P mRNA cis splicing, via spliceosome
1517	O_BomoBR101366_5prime_partial:A_BomoBR_DN29865_c0_g2_i1 107bp	Bomo_Chr23
1518	O_BomoBR101367_complete:A_BomoBR_DN29865_c0_g1_i8 157bp	Bomo_Chr15	RNA-binding_protein_1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000381 P regulation of alternative mRNA splicing, via spliceosome GO:0000398 P mRNA splicing, via spliceosome GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0003729 F mRNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0006376 P mRNA splice site selection GO:0006397 P mRNA processing GO:0008380 P RNA splicing GO:0010468 P regulation of gene expression GO:0031440 P regulation of mRNA 3'-end processing GO:0035327 C euchromatin GO:0045292 P mRNA cis splicing, via spliceosome
1519	O_BomoBR101368_complete:A_BomoBR_DN29865_c0_g1_i10 157bp	Bomo_Chr15	RNA-binding_protein_1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000381 P regulation of alternative mRNA splicing, via spliceosome GO:0000398 P mRNA splicing, via spliceosome GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0003729 F mRNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0006376 P mRNA splice site selection GO:0006397 P mRNA processing GO:0008380 P RNA splicing GO:0010468 P regulation of gene expression GO:0031440 P regulation of mRNA 3'-end processing GO:0035327 C euchromatin GO:0045292 P mRNA cis splicing, via spliceosome
1520	O_BomoBR101369_3prime_partial:A_BomoBR_DN29865_c0_g1_i11 110bp	Bomo_Chr15	RNA-binding_protein_1_isoform_X2_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000381 P regulation of alternative mRNA splicing, via spliceosome GO:0000398 P mRNA splicing, via spliceosome GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0003729 F mRNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0006376 P mRNA splice site selection GO:0006397 P mRNA processing GO:0008380 P RNA splicing GO:0010468 P regulation of gene expression GO:0031440 P regulation of mRNA 3'-end processing GO:0035327 C euchromatin GO:0045292 P mRNA cis splicing, via spliceosome
1521	O_BomoBR10136_complete:A_BomoBR_DN31333_c3_g2_i3 112bp	Bomo_Chr20
1522	O_BomoBR101370_5prime_partial:A_BomoBR_DN29865_c0_g1_i11 107bp	Bomo_Chr15
1523	O_BomoBR101371_complete:A_BomoBR_DN29865_c0_g1_i12 305bp	Bomo_Chr15	UDP-xylose_and_UDP-N-acetylglucosamine_transporter_isoform_X1_[Bombyx_mori]	GO:0000139 C Golgi membrane GO:0005462 F UDP-N-acetylglucosamine transmembrane transporter activity GO:0005464 F UDP-xylose transmembrane transporter activity GO:0005783 C endoplasmic reticulum GO:0005794 C Golgi apparatus GO:0006111 P regulation of gluconeogenesis GO:0006810 P transport GO:0008643 P carbohydrate transport GO:0015788 P UDP-N-acetylglucosamine transmembrane transport GO:0015790 P UDP-xylose transmembrane transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0055085 P transmembrane transport GO:1990569 P UDP-N-acetylglucosamine transmembrane transport
1524	O_BomoBR101372_complete:A_BomoBR_DN29865_c0_g1_i12 157bp	Bomo_Chr15	RNA-binding_protein_1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000381 P regulation of alternative mRNA splicing, via spliceosome GO:0000398 P mRNA splicing, via spliceosome GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0003729 F mRNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0006376 P mRNA splice site selection GO:0006397 P mRNA processing GO:0008380 P RNA splicing GO:0010468 P regulation of gene expression GO:0031440 P regulation of mRNA 3'-end processing GO:0035327 C euchromatin GO:0045292 P mRNA cis splicing, via spliceosome
1525	O_BomoBR101373_complete:A_BomoBR_DN29865_c0_g1_i13 305bp	Bomo_Chr15	UDP-xylose_and_UDP-N-acetylglucosamine_transporter_isoform_X1_[Bombyx_mori]	GO:0000139 C Golgi membrane GO:0005462 F UDP-N-acetylglucosamine transmembrane transporter activity GO:0005464 F UDP-xylose transmembrane transporter activity GO:0005783 C endoplasmic reticulum GO:0005794 C Golgi apparatus GO:0006111 P regulation of gluconeogenesis GO:0006810 P transport GO:0008643 P carbohydrate transport GO:0015788 P UDP-N-acetylglucosamine transmembrane transport GO:0015790 P UDP-xylose transmembrane transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0055085 P transmembrane transport GO:1990569 P UDP-N-acetylglucosamine transmembrane transport
1526	O_BomoBR101374_complete:A_BomoBR_DN29865_c0_g1_i13 157bp	Bomo_Chr15	RNA-binding_protein_1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000381 P regulation of alternative mRNA splicing, via spliceosome GO:0000398 P mRNA splicing, via spliceosome GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0003729 F mRNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0006376 P mRNA splice site selection GO:0006397 P mRNA processing GO:0008380 P RNA splicing GO:0010468 P regulation of gene expression GO:0031440 P regulation of mRNA 3'-end processing GO:0035327 C euchromatin GO:0045292 P mRNA cis splicing, via spliceosome
1527	O_BomoBR101375_complete:A_BomoBR_DN29865_c0_g1_i14 160bp	Bomo_Chr15	RNA-binding_protein_1_isoform_X1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000381 P regulation of alternative mRNA splicing, via spliceosome GO:0000398 P mRNA splicing, via spliceosome GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0003729 F mRNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0006376 P mRNA splice site selection GO:0006397 P mRNA processing GO:0008380 P RNA splicing GO:0010468 P regulation of gene expression GO:0031440 P regulation of mRNA 3'-end processing GO:0035327 C euchromatin GO:0045292 P mRNA cis splicing, via spliceosome
1528	O_BomoBR101376_complete:A_BomoBR_DN29865_c0_g1_i15 305bp	Bomo_Chr15	UDP-xylose_and_UDP-N-acetylglucosamine_transporter_isoform_X1_[Bombyx_mori]	GO:0000139 C Golgi membrane GO:0005462 F UDP-N-acetylglucosamine transmembrane transporter activity GO:0005464 F UDP-xylose transmembrane transporter activity GO:0005783 C endoplasmic reticulum GO:0005794 C Golgi apparatus GO:0006111 P regulation of gluconeogenesis GO:0006810 P transport GO:0008643 P carbohydrate transport GO:0015788 P UDP-N-acetylglucosamine transmembrane transport GO:0015790 P UDP-xylose transmembrane transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0055085 P transmembrane transport GO:1990569 P UDP-N-acetylglucosamine transmembrane transport
1529	O_BomoBR101377_complete:A_BomoBR_DN29865_c0_g1_i15 128bp	Bomo_Chr15	RNA-binding_protein_1_[Bombyx_mori]
1530	O_BomoBR101378_complete:A_BomoBR_DN29865_c0_g1_i16 212bp	Bomo_Chr15	UDP-xylose_and_UDP-N-acetylglucosamine_transporter_isoform_X3_[Bombyx_mori]	GO:0000139 C Golgi membrane GO:0005457 F GDP-fucose transmembrane transporter activity GO:0005462 F UDP-N-acetylglucosamine transmembrane transporter activity GO:0005464 F UDP-xylose transmembrane transporter activity GO:0005794 C Golgi apparatus GO:0006810 P transport GO:0008643 P carbohydrate transport GO:0015783 P GDP-fucose transmembrane transport GO:0015790 P UDP-xylose transmembrane transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0030173 C integral component of Golgi membrane GO:0030176 C integral component of endoplasmic reticulum membrane GO:0055085 P transmembrane transport GO:1990569 P UDP-N-acetylglucosamine transmembrane transport