Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
991	O_BomoOtmSK10893_5prime_partial:A_BomoOtmSK_comp13682_c0_seq4 706bp	Bomo_Chr4	spalt_protein_[Danaus_plexippus_plexippus]	GO:0000122 P negative regulation of transcription by RNA polymerase II GO:0000792 C heterochromatin GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific GO:0001657 P ureteric bud development GO:0001658 P branching involved in ureteric bud morphogenesis GO:0001822 P kidney development GO:0003281 P ventricular septum development GO:0003337 P mesenchymal to epithelial transition involved in metanephros morphogenesis GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0003700 F DNA-binding transcription factor activity GO:0004407 F histone deacetylase activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0007507 P heart development GO:0008013 F beta-catenin binding GO:0008406 P gonad development GO:0010369 C chromocenter GO:0016575 P histone deacetylation GO:0016581 C NuRD complex GO:0021553 P olfactory nerve development GO:0021889 P olfactory bulb interneuron differentiation GO:0021983 P pituitary gland development GO:0022008 P neurogenesis GO:0030177 P positive regulation of Wnt signaling pathway GO:0030325 P adrenal gland development GO:0031129 P inductive cell-cell signaling GO:0035019 P somatic stem cell population maintenance GO:0042473 P outer ear morphogenesis GO:0042733 P embryonic digit morphogenesis GO:0043565 F sequence-specific DNA binding GO:0044212 F transcription cis-regulatory region binding GO:0045892 P negative regulation of transcription, DNA-templated GO:0045893 P positive regulation of transcription, DNA-templated GO:0045944 P positive regulation of transcription by RNA polymerase II GO:0046872 F metal ion binding GO:0048566 P embryonic digestive tract development GO:0060173 P limb development GO:0061034 P olfactory bulb mitral cell layer development GO:0072073 P kidney epithelium development GO:0072092 P ureteric bud invasion
992	O_BomoOtmSK10894_complete:A_BomoOtmSK_comp13682_c0_seq4 129bp	Bomo_Chr4
993	O_BomoOtmSK10895_complete:A_BomoOtmSK_comp13682_c0_seq4 101bp	Bomo_Chr4
994	O_BomoOtmSK10896_3prime_partial:A_BomoOtmSK_comp13682_c0_seq5 666bp	Bomo_Chr4	homeotic_protein_spalt-major_isoform_X3_[Bombyx_mori]	GO:0000381 P regulation of alternative mRNA splicing, via spliceosome GO:0001751 P compound eye photoreceptor cell differentiation GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0003700 F DNA-binding transcription factor activity GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006366 P transcription by RNA polymerase II GO:0007165 P signal transduction GO:0007275 P multicellular organism development GO:0007379 P segment specification GO:0007423 P sensory organ development GO:0007424 P open tracheal system development GO:0007427 P epithelial cell migration, open tracheal system GO:0007438 P oenocyte development GO:0007525 P somatic muscle development GO:0007605 P sensory perception of sound GO:0008584 P male gonad development GO:0008586 P imaginal disc-derived wing vein morphogenesis GO:0021782 P glial cell development GO:0030539 P male genitalia development GO:0035155 P negative regulation of terminal cell fate specification, open tracheal system GO:0035277 P spiracle morphogenesis, open tracheal system GO:0035310 P notum cell fate specification GO:0042659 P regulation of cell fate specification GO:0043565 F sequence-specific DNA binding GO:0044212 F transcription cis-regulatory region binding GO:0045465 P R8 cell differentiation GO:0045466 P R7 cell differentiation GO:0045892 P negative regulation of transcription, DNA-templated GO:0046845 P branched duct epithelial cell fate determination, open tracheal system GO:0046872 F metal ion binding GO:0048098 P antennal joint development GO:0048644 P muscle organ morphogenesis
995	O_BomoOtmSK10897_5prime_partial:A_BomoOtmSK_comp13682_c0_seq5 138bp	Bomo_Chr4
996	O_BomoOtmSK10898_complete:A_BomoOtmSK_comp13682_c0_seq5 117bp	Bomo_Chr4
997	O_BomoOtmSK10899_complete:A_BomoOtmSK_comp13683_c0_seq1 149bp	Bomo_Chr1	uncharacterized_protein_LOC101742576_[Bombyx_mori]
998	O_BomoOtmSK1089_complete:A_BomoOtmSK_comp4564_c0_seq1 100bp	Bomo_Chr14
999	O_BomoOtmSK108_internal:A_BomoOtmSK_comp409_c0_seq1 246bp	Bomo_Chr25	phosphofurin_acidic_cluster_sorting_protein_1_isoform_X3_[Bombyx_mori]	GO:0000042 P protein localization to Golgi apparatus GO:0005515 F protein binding GO:0005794 C Golgi apparatus GO:0005829 C cytosol GO:0016032 P viral process GO:0030137 C COPI-coated vesicle GO:0032092 P positive regulation of protein binding GO:0034613 P cellular protein localization GO:0044325 F transmembrane transporter binding GO:0048471 C perinuclear region of cytoplasm GO:0050690 P regulation of defense response to virus by virus GO:0072661 P protein localization to plasma membrane
1000	O_BomoOtmSK10900_complete:A_BomoOtmSK_comp13683_c0_seq3 173bp	Bomo_Chr1	uncharacterized_protein_LOC101742576_[Bombyx_mori]
1001	O_BomoOtmSK10901_internal:A_BomoOtmSK_comp13684_c0_seq1 966bp	Bomo_Chr17	E3_ubiquitin-protein_ligase_RBBP6_[Bombyx_mori]
1002	O_BomoOtmSK10902_complete:A_BomoOtmSK_comp13684_c0_seq1 223bp	Bomo_Chr17
1003	O_BomoOtmSK10903_complete:A_BomoOtmSK_comp13684_c0_seq1 112bp	Bomo_Chr17
1004	O_BomoOtmSK10904_complete:A_BomoOtmSK_comp13685_c0_seq1 342bp	Bomo_Chr27	glycosyltransferase_isoform_X1_[Bombyx_mori]	GO:0000139 C Golgi membrane GO:0005783 C endoplasmic reticulum GO:0005794 C Golgi apparatus GO:0006486 P protein glycosylation GO:0008378 F galactosyltransferase activity GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016740 F transferase activity GO:0016757 F glycosyltransferase activity
1005	O_BomoOtmSK10905_3prime_partial:A_BomoOtmSK_comp13686_c0_seq1 269bp	Bomo_Chr24	serine/arginine_repetitive_matrix_protein_1_isoform_X1_[Bombyx_mori]
1006	O_BomoOtmSK10906_3prime_partial:A_BomoOtmSK_comp13686_c0_seq2 263bp	Bomo_Chr24	serine/arginine_repetitive_matrix_protein_1_isoform_X2_[Bombyx_mori]
1007	O_BomoOtmSK10907_3prime_partial:A_BomoOtmSK_comp13686_c0_seq3 263bp	Bomo_Chr24	serine/arginine_repetitive_matrix_protein_1_isoform_X2_[Bombyx_mori]
1008	O_BomoOtmSK10908_3prime_partial:A_BomoOtmSK_comp13686_c0_seq4 269bp	Bomo_Chr24	serine/arginine_repetitive_matrix_protein_1_isoform_X1_[Bombyx_mori]
1009	O_BomoOtmSK10909_3prime_partial:A_BomoOtmSK_comp13686_c0_seq5 263bp	Bomo_Chr24	serine/arginine_repetitive_matrix_protein_1_isoform_X2_[Bombyx_mori]
1010	O_BomoOtmSK1090_internal:A_BomoOtmSK_comp4566_c0_seq1 312bp	Bomo_Chr4	L-threonine_dehydrogenase_[Bombyx_mori]	GO:0003824 F catalytic activity GO:0005739 C mitochondrion GO:0006567 P threonine catabolic process GO:0008743 F L-threonine 3-dehydrogenase activity GO:0016491 F oxidoreductase activity GO:0019518 P L-threonine catabolic process to glycine GO:0050662 F obsolete coenzyme binding GO:0055114 P obsolete oxidation-reduction process
1011	O_BomoOtmSK10910_complete:A_BomoOtmSK_comp13686_c0_seq5 149bp	Bomo_Chr24
1012	O_BomoOtmSK10911_3prime_partial:A_BomoOtmSK_comp13686_c0_seq6 269bp	Bomo_Chr24	serine/arginine_repetitive_matrix_protein_1_isoform_X1_[Bombyx_mori]
1013	O_BomoOtmSK10912_3prime_partial:A_BomoOtmSK_comp13686_c0_seq7 269bp	Bomo_Chr24	serine/arginine_repetitive_matrix_protein_1_isoform_X1_[Bombyx_mori]
1014	O_BomoOtmSK10913_complete:A_BomoOtmSK_comp13686_c0_seq7 149bp	Bomo_Chr24
1015	O_BomoOtmSK10914_3prime_partial:A_BomoOtmSK_comp13686_c0_seq8 263bp	Bomo_Chr24	serine/arginine_repetitive_matrix_protein_1_isoform_X2_[Bombyx_mori]
1016	O_BomoOtmSK10915_5prime_partial:A_BomoOtmSK_comp13686_c0_seq8 100bp	Bomo_Chr24
1017	O_BomoOtmSK10916_complete:A_BomoOtmSK_comp13687_c1_seq1 358bp	Bomo_Chr23	acidic_fibroblast_growth_factor_intracellular-binding_protein_[Bombyx_mori]	GO:0005634 C nucleus GO:0012505 C endomembrane system GO:0016020 C membrane GO:0017134 F fibroblast growth factor binding GO:0070062 C extracellular exosome GO:0070527 P platelet aggregation
1018	O_BomoOtmSK10917_complete:A_BomoOtmSK_comp13687_c1_seq2 274bp	Bomo_Chr23	acidic_fibroblast_growth_factor_intracellular-binding_protein_[Bombyx_mori]	GO:0005634 C nucleus GO:0012505 C endomembrane system GO:0016020 C membrane GO:0017134 F fibroblast growth factor binding GO:0070062 C extracellular exosome GO:0070527 P platelet aggregation
1019	O_BomoOtmSK10918_5prime_partial:A_BomoOtmSK_comp13687_c1_seq3 179bp	Bomo_Chr23	acidic_fibroblast_growth_factor_intracellular-binding_protein_[Bombyx_mori]	GO:0005515 F protein binding GO:0005634 C nucleus GO:0007368 P determination of left/right symmetry GO:0012505 C endomembrane system GO:0016020 C membrane GO:0017134 F fibroblast growth factor binding GO:0060026 P convergent extension GO:0060271 P cilium assembly GO:0070121 P Kupffer's vesicle development
1020	O_BomoOtmSK10919_3prime_partial:A_BomoOtmSK_comp13690_c0_seq1 494bp	Bomo_Chr25	DNA_damage-binding_protein_1_[Bombyx_mori]	GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006281 P DNA repair GO:0006974 P cellular response to DNA damage stimulus GO:0016567 P protein ubiquitination GO:0031464 C Cul4A-RING E3 ubiquitin ligase complex GO:0031465 C Cul4B-RING E3 ubiquitin ligase complex GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process GO:0080008 C Cul4-RING E3 ubiquitin ligase complex