SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/35878
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
961 O_BomoOtmSK10866_internal:A_BomoOtmSK_comp13680_c1_seq1
898bp
 LOW_QUALITY_PROTEIN:_PAX-interacting_protein_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
962 O_BomoOtmSK10867_complete:A_BomoOtmSK_comp13680_c1_seq1
186bp
963 O_BomoOtmSK10868_5prime_partial:A_BomoOtmSK_comp13680_c1_seq1
140bp
964 O_BomoOtmSK10869_complete:A_BomoOtmSK_comp13680_c1_seq1
102bp
965 O_BomoOtmSK1086_internal:A_BomoOtmSK_comp4564_c0_seq1
1346bp
 uncharacterized_protein_LOC110380322_isoform_X1_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0002790 P peptide secretion
GO:0005102 F signaling receptor binding
GO:0005215 F transporter activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005548 F phospholipid transporter activity
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006497 P protein lipidation
GO:0006810 P transport
GO:0006911 P phagocytosis, engulfment
GO:0007040 P lysosome organization
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007584 P response to nutrient
GO:0008203 P cholesterol metabolic process
GO:0008509 F anion transmembrane transporter activity
GO:0009897 C external side of plasma membrane
GO:0009986 C cell surface
GO:0010875 P positive regulation of cholesterol efflux
GO:0015914 P phospholipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016197 P endosomal transport
GO:0016887 F ATP hydrolysis activity
GO:0017127 F cholesterol transfer activity
GO:0019905 F syntaxin binding
GO:0030139 C endocytic vesicle
GO:0030301 P cholesterol transport
GO:0030819 P obsolete positive regulation of cAMP biosynthetic process
GO:0031267 F small GTPase binding
GO:0032367 P intracellular cholesterol transport
GO:0032489 P regulation of Cdc42 protein signal transduction
GO:0033344 P cholesterol efflux
GO:0033700 P phospholipid efflux
GO:0034185 F apolipoprotein binding
GO:0034186 F apolipoprotein A-I binding
GO:0034188 F apolipoprotein A-I receptor activity
GO:0034364 C high-density lipoprotein particle
GO:0034380 P high-density lipoprotein particle assembly
GO:0034616 P response to laminar fluid shear stress
GO:0038027 P apolipoprotein A-I-mediated signaling pathway
GO:0042157 P lipoprotein metabolic process
GO:0042158 P lipoprotein biosynthetic process
GO:0042493 P response to xenobiotic stimulus
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0042632 P cholesterol homeostasis
GO:0043231 C intracellular membrane-bounded organelle
GO:0043691 P reverse cholesterol transport
GO:0045121 C membrane raft
GO:0045332 P phospholipid translocation
GO:0045335 C phagocytic vesicle
GO:0048471 C perinuclear region of cytoplasm
GO:0050702 P interleukin-1 beta production
GO:0051117 F ATPase binding
GO:0055085 P transmembrane transport
GO:0055091 P phospholipid homeostasis
GO:0055098 P cellular response to low-density lipoprotein particle stimulus
GO:0055099 P cellular response to high density lipoprotein particle stimulus
GO:0060155 P platelet dense granule organization
GO:0071222 P cellular response to lipopolysaccharide
GO:0071300 P cellular response to retinoic acid
GO:0071397 P cellular response to cholesterol
GO:0098656 P anion transmembrane transport
966 O_BomoOtmSK10870_internal:A_BomoOtmSK_comp13680_c1_seq2
925bp
 LOW_QUALITY_PROTEIN:_PAX-interacting_protein_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
967 O_BomoOtmSK10871_complete:A_BomoOtmSK_comp13680_c1_seq2
186bp
968 O_BomoOtmSK10872_5prime_partial:A_BomoOtmSK_comp13680_c1_seq2
140bp
969 O_BomoOtmSK10873_complete:A_BomoOtmSK_comp13680_c1_seq2
102bp
970 O_BomoOtmSK10874_3prime_partial:A_BomoOtmSK_comp13681_c0_seq1
760bp
 double-strand-break_repair_protein_rad21_homolog_[Bombyx_mori]
GO:0000228 C nuclear chromosome
GO:0000775 C chromosome, centromeric region
GO:0000785 C chromatin
GO:0000794 C condensed nuclear chromosome
GO:0001228 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006310 P DNA recombination
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0006915 P apoptotic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007062 P sister chromatid cohesion
GO:0007067 P mitotic cell cycle
GO:0007131 P reciprocal meiotic recombination
GO:0008278 C cohesin complex
GO:0016020 C membrane
GO:0016925 P protein sumoylation
GO:0034991 C nuclear meiotic cohesin complex
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051301 P cell division
GO:0071168 P protein localization to chromatin
971 O_BomoOtmSK10875_complete:A_BomoOtmSK_comp13681_c0_seq1
166bp
972 O_BomoOtmSK10876_complete:A_BomoOtmSK_comp13681_c0_seq1
149bp
973 O_BomoOtmSK10877_5prime_partial:A_BomoOtmSK_comp13681_c0_seq1
112bp
974 O_BomoOtmSK10878_3prime_partial:A_BomoOtmSK_comp13681_c0_seq2
737bp
 double-strand-break_repair_protein_rad21_homolog_[Bombyx_mori]
GO:0000228 C nuclear chromosome
GO:0000775 C chromosome, centromeric region
GO:0000785 C chromatin
GO:0000794 C condensed nuclear chromosome
GO:0001228 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006310 P DNA recombination
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0006915 P apoptotic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007062 P sister chromatid cohesion
GO:0007067 P mitotic cell cycle
GO:0007131 P reciprocal meiotic recombination
GO:0008278 C cohesin complex
GO:0016020 C membrane
GO:0016925 P protein sumoylation
GO:0034991 C nuclear meiotic cohesin complex
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051301 P cell division
GO:0071168 P protein localization to chromatin
975 O_BomoOtmSK10879_complete:A_BomoOtmSK_comp13681_c0_seq2
166bp
976 O_BomoOtmSK1087_complete:A_BomoOtmSK_comp4564_c0_seq1
124bp
977 O_BomoOtmSK10880_complete:A_BomoOtmSK_comp13681_c0_seq2
149bp
978 O_BomoOtmSK10881_5prime_partial:A_BomoOtmSK_comp13681_c0_seq2
112bp
979 O_BomoOtmSK10882_internal:A_BomoOtmSK_comp13682_c0_seq1
412bp
 Sal-like_protein_1_[Papilio_machaon]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000792 C heterochromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001657 P ureteric bud development
GO:0001658 P branching involved in ureteric bud morphogenesis
GO:0001822 P kidney development
GO:0003281 P ventricular septum development
GO:0003337 P mesenchymal to epithelial transition involved in metanephros morphogenesis
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004407 F histone deacetylase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007507 P heart development
GO:0008013 F beta-catenin binding
GO:0008406 P gonad development
GO:0010369 C chromocenter
GO:0016575 P histone deacetylation
GO:0016581 C NuRD complex
GO:0021553 P olfactory nerve development
GO:0021889 P olfactory bulb interneuron differentiation
GO:0021983 P pituitary gland development
GO:0022008 P neurogenesis
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0030325 P adrenal gland development
GO:0031129 P inductive cell-cell signaling
GO:0035019 P somatic stem cell population maintenance
GO:0042473 P outer ear morphogenesis
GO:0042733 P embryonic digit morphogenesis
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048566 P embryonic digestive tract development
GO:0060173 P limb development
GO:0061034 P olfactory bulb mitral cell layer development
GO:0072073 P kidney epithelium development
GO:0072092 P ureteric bud invasion
980 O_BomoOtmSK10883_complete:A_BomoOtmSK_comp13682_c0_seq2
960bp
 homeotic_protein_spalt-major_isoform_X3_[Bombyx_mori]
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0001751 P compound eye photoreceptor cell differentiation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007379 P segment specification
GO:0007423 P sensory organ development
GO:0007424 P open tracheal system development
GO:0007427 P epithelial cell migration, open tracheal system
GO:0007438 P oenocyte development
GO:0007525 P somatic muscle development
GO:0007605 P sensory perception of sound
GO:0008584 P male gonad development
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0021782 P glial cell development
GO:0030539 P male genitalia development
GO:0035155 P negative regulation of terminal cell fate specification, open tracheal system
GO:0035277 P spiracle morphogenesis, open tracheal system
GO:0035310 P notum cell fate specification
GO:0042659 P regulation of cell fate specification
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045465 P R8 cell differentiation
GO:0045466 P R7 cell differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046845 P branched duct epithelial cell fate determination, open tracheal system
GO:0046872 F metal ion binding
GO:0048098 P antennal joint development
GO:0048644 P muscle organ morphogenesis
981 O_BomoOtmSK10884_5prime_partial:A_BomoOtmSK_comp13682_c0_seq2
138bp
982 O_BomoOtmSK10885_complete:A_BomoOtmSK_comp13682_c0_seq2
129bp
983 O_BomoOtmSK10886_complete:A_BomoOtmSK_comp13682_c0_seq2
117bp
984 O_BomoOtmSK10887_complete:A_BomoOtmSK_comp13682_c0_seq2
101bp
985 O_BomoOtmSK10888_complete:A_BomoOtmSK_comp13682_c0_seq3
247bp
 homeotic_protein_spalt-major_isoform_X3_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0021891 P olfactory bulb interneuron development
GO:0035136 P forelimb morphogenesis
GO:0035137 P hindlimb morphogenesis
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0046872 F metal ion binding
986 O_BomoOtmSK10889_complete:A_BomoOtmSK_comp13682_c0_seq3
129bp
987 O_BomoOtmSK1088_complete:A_BomoOtmSK_comp4564_c0_seq1
111bp
988 O_BomoOtmSK10890_5prime_partial:A_BomoOtmSK_comp13682_c0_seq3
113bp
 homeotic_protein_spalt-major_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007165 P signal transduction
GO:0021891 P olfactory bulb interneuron development
GO:0022008 P neurogenesis
GO:0035136 P forelimb morphogenesis
GO:0035137 P hindlimb morphogenesis
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0046872 F metal ion binding
989 O_BomoOtmSK10891_5prime_partial:A_BomoOtmSK_comp13682_c0_seq3
103bp
990 O_BomoOtmSK10892_complete:A_BomoOtmSK_comp13682_c0_seq3
101bp
previous next from show/35878

- SilkBase 1999-2023 -