Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
4111	O_BomoOtmSK13700_complete:A_BomoOtmSK_comp14757_c0_seq1 515bp	Bomo_Chr17	N-sulphoglucosamine_sulphohydrolase_[Bombyx_mori]	GO:0003824 F catalytic activity GO:0005764 C lysosome GO:0006027 P glycosaminoglycan catabolic process GO:0006029 P proteoglycan metabolic process GO:0008152 P metabolic process GO:0008484 F sulfuric ester hydrolase activity GO:0016250 F N-sulfoglucosamine sulfohydrolase activity GO:0016787 F hydrolase activity GO:0043202 C lysosomal lumen GO:0046872 F metal ion binding GO:0070062 C extracellular exosome
4112	O_BomoOtmSK13701_complete:A_BomoOtmSK_comp14757_c0_seq1 251bp	Bomo_Chr17	phosphomannomutase_1_[Bombyx_mori]	GO:0004615 F phosphomannomutase activity GO:0005737 C cytoplasm GO:0006013 P mannose metabolic process GO:0009298 P GDP-mannose biosynthetic process GO:0016853 F isomerase activity GO:0043025 C neuronal cell body GO:0046872 F metal ion binding
4113	O_BomoOtmSK13702_5prime_partial:A_BomoOtmSK_comp14759_c0_seq1 360bp	Bomo_Chr16	potassium_channel_subfamily_K_member_3_[Bombyx_mori]	GO:0005267 F potassium channel activity GO:0005515 F protein binding GO:0005886 C plasma membrane GO:0005887 C integral component of plasma membrane GO:0006810 P transport GO:0006811 P ion transport GO:0006813 P potassium ion transport GO:0015269 F calcium-activated potassium channel activity GO:0015271 F outward rectifier potassium channel activity GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0022841 F potassium ion leak channel activity GO:0030322 P stabilization of membrane potential GO:0071435 P potassium ion export across plasma membrane GO:0071467 P cellular response to pH GO:0071805 P potassium ion transmembrane transport
4114	O_BomoOtmSK13703_complete:A_BomoOtmSK_comp14761_c0_seq1 1226bp	Bomo_Chr18	serine/threonine-protein_kinase_SIK2_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000287 F magnesium ion binding GO:0004672 F protein kinase activity GO:0004674 F protein serine/threonine kinase activity GO:0005515 F protein binding GO:0005524 F ATP binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006468 P protein phosphorylation GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016740 F transferase activity GO:0032870 P cellular response to hormone stimulus GO:0035556 P intracellular signal transduction GO:0046626 P regulation of insulin receptor signaling pathway GO:0046777 P protein autophosphorylation GO:0046872 F metal ion binding
4115	O_BomoOtmSK13704_complete:A_BomoOtmSK_comp14762_c2_seq2 285bp	Bomo_Chr19	basigin_[Bombyx_mori]	GO:0000139 C Golgi membrane GO:0002080 C acrosomal membrane GO:0005515 F protein binding GO:0005537 F mannose binding GO:0005739 C mitochondrion GO:0005886 C plasma membrane GO:0005887 C integral component of plasma membrane GO:0005925 C focal adhesion GO:0006090 P pyruvate metabolic process GO:0007166 P cell surface receptor signaling pathway GO:0007566 P embryo implantation GO:0008028 F monocarboxylic acid transmembrane transporter activity GO:0015718 P monocarboxylic acid transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0022617 P extracellular matrix disassembly GO:0030198 P extracellular matrix organization GO:0030246 F carbohydrate binding GO:0042383 C sarcolemma GO:0042470 C melanosome GO:0042475 P odontogenesis of dentin-containing tooth GO:0043434 P response to peptide hormone GO:0045121 C membrane raft GO:0046689 P response to mercury ion GO:0046697 P decidualization GO:0050900 P leukocyte migration GO:0051591 P response to cAMP GO:0070062 C extracellular exosome GO:0072661 P protein localization to plasma membrane
4116	O_BomoOtmSK13705_complete:A_BomoOtmSK_comp14762_c2_seq2 141bp	Bomo_Chr19
4117	O_BomoOtmSK13706_internal:A_BomoOtmSK_comp14763_c0_seq1 170bp	Bomo_Chr10
4118	O_BomoOtmSK13707_internal:A_BomoOtmSK_comp14763_c0_seq1 170bp	Bomo_Chr10	kinase_D-interacting_substrate_of_220_kDa_isoform_X4_[Bombyx_mori]	GO:0000186 P obsolete activation of MAPKK activity GO:0005515 F protein binding GO:0005768 C endosome GO:0005770 C late endosome GO:0005829 C cytosol GO:0007399 P nervous system development GO:0010976 P positive regulation of neuron projection development GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0019887 F protein kinase regulator activity GO:0019901 F protein kinase binding GO:0030165 F PDZ domain binding GO:0038180 P nerve growth factor signaling pathway GO:0043234 C protein-containing complex GO:1990090 P cellular response to nerve growth factor stimulus
4119	O_BomoOtmSK13708_complete:A_BomoOtmSK_comp14764_c0_seq1 376bp	Bomo_Chr5	proline-rich_protein_PRCC_[Bombyx_mori]	GO:0005515 F protein binding GO:0005634 C nucleus GO:0007049 P cell cycle GO:0007093 P mitotic cell cycle checkpoint signaling
4120	O_BomoOtmSK13709_complete:A_BomoOtmSK_comp14764_c0_seq1 125bp	Bomo_Chr5
4121	O_BomoOtmSK1370_5prime_partial:A_BomoOtmSK_comp4907_c0_seq1 377bp	Bomo_Chr13	uncharacterized_protein_LOC101741917_isoform_X1_[Bombyx_mori]
4122	O_BomoOtmSK13710_complete:A_BomoOtmSK_comp14764_c0_seq2 376bp	Bomo_Chr5	proline-rich_protein_PRCC_[Bombyx_mori]	GO:0005515 F protein binding GO:0005634 C nucleus GO:0007049 P cell cycle GO:0007093 P mitotic cell cycle checkpoint signaling
4123	O_BomoOtmSK13711_complete:A_BomoOtmSK_comp14764_c0_seq2 192bp	Bomo_Chr5	28S_ribosomal_protein_S11,_mitochondrial_[Bombyx_mori]	GO:0000028 P ribosomal small subunit assembly GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0003735 F structural constituent of ribosome GO:0005739 C mitochondrion GO:0005743 C mitochondrial inner membrane GO:0005763 C mitochondrial small ribosomal subunit GO:0005840 C ribosome GO:0006412 P translation GO:0030529 C ribonucleoprotein complex GO:0032543 P mitochondrial translation GO:0042769 P obsolete DNA damage response, detection of DNA damage GO:0044822 F RNA binding GO:0048027 F mRNA 5'-UTR binding GO:0070125 P mitochondrial translational elongation GO:0070126 P mitochondrial translational termination GO:0070181 F small ribosomal subunit rRNA binding
4124	O_BomoOtmSK13712_complete:A_BomoOtmSK_comp14764_c0_seq2 125bp	Bomo_Chr5
4125	O_BomoOtmSK13713_complete:A_BomoOtmSK_comp14765_c0_seq1 334bp	Bomo_Chr10	methylosome_protein_50_[Bombyx_mori]	GO:0000387 P spliceosomal snRNP assembly GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0005794 C Golgi apparatus GO:0005829 C cytosol GO:0006357 P regulation of transcription by RNA polymerase II GO:0008284 P positive regulation of cell population proliferation GO:0008285 P negative regulation of cell population proliferation GO:0008327 F methyl-CpG binding GO:0016274 F protein-arginine N-methyltransferase activity GO:0030374 F nuclear receptor coactivator activity GO:0034709 C methylosome GO:0035246 P peptidyl-arginine N-methylation GO:0060528 P secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development GO:0060770 P negative regulation of epithelial cell proliferation involved in prostate gland development
4126	O_BomoOtmSK13714_5prime_partial:A_BomoOtmSK_comp14766_c0_seq1 763bp	Bomo_Chr12	probable_methyltransferase_TARBP1_[Bombyx_mori]	GO:0003723 F RNA binding GO:0005634 C nucleus GO:0006357 P regulation of transcription by RNA polymerase II GO:0006396 P RNA processing GO:0008168 F methyltransferase activity GO:0008173 F RNA methyltransferase activity GO:0016423 F tRNA (guanine) methyltransferase activity GO:0016740 F transferase activity GO:0030488 P tRNA methylation GO:0032259 P methylation
4127	O_BomoOtmSK13715_complete:A_BomoOtmSK_comp14767_c0_seq1 142bp	Bomo_Chr1	uncharacterized_protein_LOC101736230_[Bombyx_mori]
4128	O_BomoOtmSK13716_complete:A_BomoOtmSK_comp14767_c0_seq2 316bp	Bomo_Chr1	uncharacterized_protein_LOC101736230_[Bombyx_mori]
4129	O_BomoOtmSK13717_complete:A_BomoOtmSK_comp14767_c0_seq3 221bp	Bomo_Chr1	uncharacterized_protein_LOC101736230_[Bombyx_mori]
4130	O_BomoOtmSK13718_5prime_partial:A_BomoOtmSK_comp14768_c0_seq1 462bp	Bomo_Chr15	E3_ubiquitin-protein_ligase_TRIP12_isoform_X4_[Bombyx_mori]	GO:0000209 P protein polyubiquitination GO:0004842 F ubiquitin-protein transferase activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0006281 P DNA repair GO:0006974 P cellular response to DNA damage stimulus GO:0009790 P embryo development GO:0016567 P protein ubiquitination GO:0016874 F ligase activity GO:0042787 P ubiquitin-dependent protein catabolic process GO:0046966 F thyroid hormone receptor binding GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination GO:2000780 P negative regulation of double-strand break repair
4131	O_BomoOtmSK13719_complete:A_BomoOtmSK_comp14768_c0_seq1 164bp	Bomo_Chr15	transmembrane_protein_256_homolog_isoform_X1_[Bombyx_mori]	GO:0005886 C plasma membrane GO:0016020 C membrane GO:0016021 C integral component of membrane
4132	O_BomoOtmSK1371_3prime_partial:A_BomoOtmSK_comp4908_c0_seq1 124bp	Bomo_Chr10	PREDICTED:_DPH4_homolog_[Amyelois_transitella]	GO:0005524 F ATP binding GO:0005737 C cytoplasm GO:0006260 P DNA replication GO:0006457 P protein folding GO:0008270 F zinc ion binding GO:0009408 P response to heat GO:0031072 F heat shock protein binding GO:0046872 F metal ion binding GO:0051082 F unfolded protein binding
4133	O_BomoOtmSK13720_5prime_partial:A_BomoOtmSK_comp14768_c0_seq2 462bp	Bomo_Chr15	E3_ubiquitin-protein_ligase_TRIP12_isoform_X4_[Bombyx_mori]	GO:0000209 P protein polyubiquitination GO:0004842 F ubiquitin-protein transferase activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0006281 P DNA repair GO:0006974 P cellular response to DNA damage stimulus GO:0009790 P embryo development GO:0016567 P protein ubiquitination GO:0016874 F ligase activity GO:0042787 P ubiquitin-dependent protein catabolic process GO:0046966 F thyroid hormone receptor binding GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination GO:2000780 P negative regulation of double-strand break repair
4134	O_BomoOtmSK13721_complete:A_BomoOtmSK_comp14768_c0_seq2 125bp	Bomo_Chr15	transmembrane_protein_256_homolog_isoform_X1_[Bombyx_mori]	GO:0005886 C plasma membrane GO:0016020 C membrane GO:0016021 C integral component of membrane
4135	O_BomoOtmSK13722_5prime_partial:A_BomoOtmSK_comp14768_c0_seq3 462bp	Bomo_Chr15	E3_ubiquitin-protein_ligase_TRIP12_isoform_X4_[Bombyx_mori]	GO:0000209 P protein polyubiquitination GO:0004842 F ubiquitin-protein transferase activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0006281 P DNA repair GO:0006974 P cellular response to DNA damage stimulus GO:0009790 P embryo development GO:0016567 P protein ubiquitination GO:0016874 F ligase activity GO:0042787 P ubiquitin-dependent protein catabolic process GO:0046966 F thyroid hormone receptor binding GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination GO:2000780 P negative regulation of double-strand break repair
4136	O_BomoOtmSK13723_complete:A_BomoOtmSK_comp14768_c0_seq3 143bp	Bomo_Chr15	transmembrane_protein_256_homolog_isoform_X1_[Bombyx_mori]	GO:0005886 C plasma membrane GO:0016020 C membrane GO:0016021 C integral component of membrane
4137	O_BomoOtmSK13724_5prime_partial:A_BomoOtmSK_comp14768_c0_seq4 462bp	Bomo_Chr15	E3_ubiquitin-protein_ligase_TRIP12_isoform_X4_[Bombyx_mori]	GO:0000209 P protein polyubiquitination GO:0004842 F ubiquitin-protein transferase activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0006281 P DNA repair GO:0006974 P cellular response to DNA damage stimulus GO:0009790 P embryo development GO:0016567 P protein ubiquitination GO:0016874 F ligase activity GO:0042787 P ubiquitin-dependent protein catabolic process GO:0046966 F thyroid hormone receptor binding GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination GO:2000780 P negative regulation of double-strand break repair
4138	O_BomoOtmSK13725_complete:A_BomoOtmSK_comp14768_c0_seq4 182bp	Bomo_Chr15	transmembrane_protein_256_homolog_isoform_X1_[Bombyx_mori]	GO:0005886 C plasma membrane GO:0016020 C membrane GO:0016021 C integral component of membrane
4139	O_BomoOtmSK13726_5prime_partial:A_BomoOtmSK_comp14770_c0_seq1 949bp	Bomo_Chr8	Uncharacterized_protein_OBRU01_24320,_partial_[Operophtera_brumata]
4140	O_BomoOtmSK13727_complete:A_BomoOtmSK_comp14770_c0_seq1 119bp	Bomo_Chr8