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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
361 O_BomoOtmSK10325_5prime_partial:A_BomoOtmSK_comp13484_c0_seq11
198bp
 _putative_cuticle_protein_[Bombyx_mori]
362 O_BomoOtmSK10326_complete:A_BomoOtmSK_comp13484_c0_seq12
351bp
 _putative_cuticle_protein_[Bombyx_mori]
GO:0001055 F RNA polymerase II activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
363 O_BomoOtmSK10327_complete:A_BomoOtmSK_comp13484_c0_seq13
365bp
 _putative_cuticle_protein_[Bombyx_mori]
GO:0001055 F RNA polymerase II activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
364 O_BomoOtmSK10328_5prime_partial:A_BomoOtmSK_comp13484_c0_seq14
184bp
 _putative_cuticle_protein_[Bombyx_mori]
365 O_BomoOtmSK10329_complete:A_BomoOtmSK_comp13484_c0_seq15
361bp
 _putative_cuticle_protein_[Bombyx_mori]
GO:0001055 F RNA polymerase II activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
366 O_BomoOtmSK1032_internal:A_BomoOtmSK_comp4459_c0_seq1
378bp
 ankyrin_repeat_and_LEM_domain-containing_protein_2_isoform_X2_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007084 P mitotic nuclear membrane reassembly
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0035307 P positive regulation of protein dephosphorylation
GO:0042326 P negative regulation of phosphorylation
GO:0051301 P cell division
GO:0051721 F protein phosphatase 2A binding
367 O_BomoOtmSK10330_complete:A_BomoOtmSK_comp13484_c1_seq1
117bp
 U1_small_nuclear_ribonucleoprotein_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
368 O_BomoOtmSK10331_complete:A_BomoOtmSK_comp13484_c1_seq2
117bp
 U1_small_nuclear_ribonucleoprotein_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
369 O_BomoOtmSK10332_complete:A_BomoOtmSK_comp13484_c1_seq2
117bp
 U1_small_nuclear_ribonucleoprotein_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
370 O_BomoOtmSK10333_complete:A_BomoOtmSK_comp13487_c0_seq1
231bp
 oocyte_zinc_finger_protein_XlCOF6_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
371 O_BomoOtmSK10334_5prime_partial:A_BomoOtmSK_comp13487_c0_seq1
147bp
372 O_BomoOtmSK10335_complete:A_BomoOtmSK_comp13488_c0_seq1
217bp
 phospholipid_phosphatase_6_isoform_X1_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
373 O_BomoOtmSK10336_complete:A_BomoOtmSK_comp13490_c0_seq1
365bp
 fructose_1,6-bisphosphate_aldolase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004332 F fructose-bisphosphate aldolase activity
GO:0005829 C cytosol
GO:0006096 P glycolytic process
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007498 P mesoderm development
GO:0016829 F lyase activity
GO:0030018 C Z disc
GO:0031430 C M band
374 O_BomoOtmSK10337_complete:A_BomoOtmSK_comp13490_c0_seq1
182bp
 hypothetical_protein_XAC2852_710026_[Xanthomonas_citri_subsp._citri]
375 O_BomoOtmSK10338_complete:A_BomoOtmSK_comp13490_c0_seq3
365bp
 fructose_1,6-bisphosphate_aldolase_isoform_X2_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004332 F fructose-bisphosphate aldolase activity
GO:0005829 C cytosol
GO:0006096 P glycolytic process
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007498 P mesoderm development
GO:0016829 F lyase activity
GO:0030018 C Z disc
GO:0031430 C M band
376 O_BomoOtmSK10339_complete:A_BomoOtmSK_comp13491_c0_seq1
580bp
 PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_2-like_isoform_X2_[Amyelois_transitella]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0048511 P rhythmic process
377 O_BomoOtmSK1033_5prime_partial:A_BomoOtmSK_comp4459_c0_seq1
151bp
378 O_BomoOtmSK10340_complete:A_BomoOtmSK_comp13491_c0_seq1
100bp
379 O_BomoOtmSK10341_complete:A_BomoOtmSK_comp13491_c0_seq2
939bp
 ubiquitin_carboxyl-terminal_hydrolase_17_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0048511 P rhythmic process
380 O_BomoOtmSK10342_complete:A_BomoOtmSK_comp13491_c0_seq2
100bp
381 O_BomoOtmSK10343_complete:A_BomoOtmSK_comp13492_c0_seq1
323bp
 3-hydroxyisobutyrate_dehydrogenase_[Bombyx_mori]
GO:0004616 F phosphogluconate dehydrogenase (decarboxylating) activity
GO:0005739 C mitochondrion
GO:0006574 P valine catabolic process
GO:0008442 F 3-hydroxyisobutyrate dehydrogenase activity
GO:0009083 P branched-chain amino acid catabolic process
GO:0016491 F oxidoreductase activity
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
382 O_BomoOtmSK10344_complete:A_BomoOtmSK_comp13492_c0_seq1
102bp
383 O_BomoOtmSK10345_complete:A_BomoOtmSK_comp13493_c0_seq1
1003bp
 uncharacterized_protein_LOC101737006_isoform_X1_[Bombyx_mori]
GO:0005267 F potassium channel activity
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006813 P potassium ion transport
GO:0006936 P muscle contraction
GO:0015271 F outward rectifier potassium channel activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022841 F potassium ion leak channel activity
GO:0030322 P stabilization of membrane potential
GO:0040011 P locomotion
GO:0071805 P potassium ion transmembrane transport
384 O_BomoOtmSK10346_complete:A_BomoOtmSK_comp13493_c0_seq2
678bp
 uncharacterized_protein_LOC101737006_isoform_X1_[Bombyx_mori]
GO:0005267 F potassium channel activity
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006813 P potassium ion transport
GO:0006936 P muscle contraction
GO:0015271 F outward rectifier potassium channel activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022841 F potassium ion leak channel activity
GO:0030322 P stabilization of membrane potential
GO:0040011 P locomotion
GO:0071805 P potassium ion transmembrane transport
385 O_BomoOtmSK10347_complete:A_BomoOtmSK_comp13493_c0_seq2
343bp
 uncharacterized_protein_LOC101737006_isoform_X1_[Bombyx_mori]
386 O_BomoOtmSK10348_complete:A_BomoOtmSK_comp13494_c0_seq1
178bp
387 O_BomoOtmSK10349_complete:A_BomoOtmSK_comp13494_c0_seq1
119bp
388 O_BomoOtmSK1034_complete:A_BomoOtmSK_comp4459_c0_seq1
117bp
389 O_BomoOtmSK10350_complete:A_BomoOtmSK_comp13494_c0_seq1
112bp
390 O_BomoOtmSK10351_complete:A_BomoOtmSK_comp13495_c2_seq1
373bp
 segmentation_polarity_homeobox_protein_engrailed_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007367 P segment polarity determination
GO:0043565 F sequence-specific DNA binding
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