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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
331 O_BomoOtmSK10299_complete:A_BomoOtmSK_comp13479_c0_seq1
251bp
 cAMP-dependent_protein_kinase_R2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001932 P regulation of protein phosphorylation
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005952 C cAMP-dependent protein kinase complex
GO:0007411 P axon guidance
GO:0007622 P rhythmic behavior
GO:0007623 P circadian rhythm
GO:0008603 F cAMP-dependent protein kinase regulator activity
GO:0030552 F cAMP binding
GO:0045475 P locomotor rhythm
GO:0045859 P regulation of protein kinase activity
GO:0048148 P behavioral response to cocaine
GO:0048149 P behavioral response to ethanol
GO:0048511 P rhythmic process
332 O_BomoOtmSK1029_5prime_partial:A_BomoOtmSK_comp4452_c0_seq1
116bp
333 O_BomoOtmSK102_internal:A_BomoOtmSK_comp399_c1_seq1
140bp
 putative_uncharacterized_protein_DDB_G0290521_[Bombyx_mori]
334 O_BomoOtmSK10300_complete:A_BomoOtmSK_comp13479_c0_seq1
114bp
335 O_BomoOtmSK10301_complete:A_BomoOtmSK_comp13479_c0_seq2
383bp
 cAMP-dependent_protein_kinase_R2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001932 P regulation of protein phosphorylation
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005952 C cAMP-dependent protein kinase complex
GO:0007411 P axon guidance
GO:0007622 P rhythmic behavior
GO:0007623 P circadian rhythm
GO:0008603 F cAMP-dependent protein kinase regulator activity
GO:0030552 F cAMP binding
GO:0045475 P locomotor rhythm
GO:0045859 P regulation of protein kinase activity
GO:0048148 P behavioral response to cocaine
GO:0048149 P behavioral response to ethanol
GO:0048511 P rhythmic process
336 O_BomoOtmSK10302_complete:A_BomoOtmSK_comp13479_c0_seq2
114bp
337 O_BomoOtmSK10303_complete:A_BomoOtmSK_comp13479_c0_seq3
251bp
 cAMP-dependent_protein_kinase_R2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001932 P regulation of protein phosphorylation
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005952 C cAMP-dependent protein kinase complex
GO:0007411 P axon guidance
GO:0007622 P rhythmic behavior
GO:0007623 P circadian rhythm
GO:0008603 F cAMP-dependent protein kinase regulator activity
GO:0030552 F cAMP binding
GO:0045475 P locomotor rhythm
GO:0045859 P regulation of protein kinase activity
GO:0048148 P behavioral response to cocaine
GO:0048149 P behavioral response to ethanol
GO:0048511 P rhythmic process
338 O_BomoOtmSK10304_complete:A_BomoOtmSK_comp13479_c0_seq3
114bp
339 O_BomoOtmSK10305_complete:A_BomoOtmSK_comp13479_c0_seq5
383bp
 cAMP-dependent_protein_kinase_R2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001932 P regulation of protein phosphorylation
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005952 C cAMP-dependent protein kinase complex
GO:0007411 P axon guidance
GO:0007622 P rhythmic behavior
GO:0007623 P circadian rhythm
GO:0008603 F cAMP-dependent protein kinase regulator activity
GO:0030552 F cAMP binding
GO:0045475 P locomotor rhythm
GO:0045859 P regulation of protein kinase activity
GO:0048148 P behavioral response to cocaine
GO:0048149 P behavioral response to ethanol
GO:0048511 P rhythmic process
340 O_BomoOtmSK10306_complete:A_BomoOtmSK_comp13479_c0_seq5
114bp
341 O_BomoOtmSK10307_complete:A_BomoOtmSK_comp13480_c1_seq1
185bp
 ring_finger_protein_5_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006914 P autophagy
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0036503 P ERAD pathway
GO:0036513 C Derlin-1 retrotranslocation complex
GO:0044390 F ubiquitin-like protein conjugating enzyme binding
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
GO:1904264 F ubiquitin protein ligase activity
342 O_BomoOtmSK10308_complete:A_BomoOtmSK_comp13482_c0_seq1
340bp
 LIM_and_senescent_cell_antigen-like-containing_domain_protein_1_isoform_X1_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016337 P cell-cell adhesion
GO:0030054 C cell junction
GO:0043066 P negative regulation of apoptotic process
GO:0045216 P cell-cell junction organization
GO:0046872 F metal ion binding
GO:0050680 P negative regulation of epithelial cell proliferation
GO:2000178 P negative regulation of neural precursor cell proliferation
GO:2000346 P negative regulation of hepatocyte proliferation
GO:2001046 P positive regulation of integrin-mediated signaling pathway
343 O_BomoOtmSK10309_complete:A_BomoOtmSK_comp13482_c0_seq1
139bp
 hypothetical_protein_ALC56_12040_[Trachymyrmex_septentrionalis]
344 O_BomoOtmSK1030_internal:A_BomoOtmSK_comp4458_c0_seq1
159bp
 kinase_D-interacting_substrate_of_220_kDa_isoform_X4_[Bombyx_mori]
345 O_BomoOtmSK10310_complete:A_BomoOtmSK_comp13482_c0_seq2
334bp
 LIM_and_senescent_cell_antigen-like-containing_domain_protein_1_isoform_X1_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016337 P cell-cell adhesion
GO:0030054 C cell junction
GO:0043066 P negative regulation of apoptotic process
GO:0045216 P cell-cell junction organization
GO:0046872 F metal ion binding
GO:0050680 P negative regulation of epithelial cell proliferation
GO:2000178 P negative regulation of neural precursor cell proliferation
GO:2000346 P negative regulation of hepatocyte proliferation
GO:2001046 P positive regulation of integrin-mediated signaling pathway
346 O_BomoOtmSK10311_complete:A_BomoOtmSK_comp13482_c0_seq2
139bp
 hypothetical_protein_ALC56_12040_[Trachymyrmex_septentrionalis]
347 O_BomoOtmSK10312_complete:A_BomoOtmSK_comp13482_c0_seq3
340bp
 LIM_and_senescent_cell_antigen-like-containing_domain_protein_1_isoform_X1_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016337 P cell-cell adhesion
GO:0030054 C cell junction
GO:0043066 P negative regulation of apoptotic process
GO:0045216 P cell-cell junction organization
GO:0046872 F metal ion binding
GO:0050680 P negative regulation of epithelial cell proliferation
GO:2000178 P negative regulation of neural precursor cell proliferation
GO:2000346 P negative regulation of hepatocyte proliferation
GO:2001046 P positive regulation of integrin-mediated signaling pathway
348 O_BomoOtmSK10313_complete:A_BomoOtmSK_comp13482_c0_seq3
139bp
 hypothetical_protein_ALC56_12040_[Trachymyrmex_septentrionalis]
349 O_BomoOtmSK10314_complete:A_BomoOtmSK_comp13483_c0_seq1
111bp
 uncharacterized_protein_LOC101746149_[Bombyx_mori]
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005747 C mitochondrial respiratory chain complex I
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0044822 F RNA binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
350 O_BomoOtmSK10315_complete:A_BomoOtmSK_comp13484_c0_seq1
395bp
 _putative_cuticle_protein_[Bombyx_mori]
GO:0001055 F RNA polymerase II activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
351 O_BomoOtmSK10316_complete:A_BomoOtmSK_comp13484_c0_seq2
357bp
 _putative_cuticle_protein_[Bombyx_mori]
GO:0001055 F RNA polymerase II activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
352 O_BomoOtmSK10317_complete:A_BomoOtmSK_comp13484_c0_seq3
375bp
 _putative_cuticle_protein_[Bombyx_mori]
GO:0001055 F RNA polymerase II activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
353 O_BomoOtmSK10318_complete:A_BomoOtmSK_comp13484_c0_seq4
371bp
 _putative_cuticle_protein_[Bombyx_mori]
GO:0001055 F RNA polymerase II activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
354 O_BomoOtmSK10319_complete:A_BomoOtmSK_comp13484_c0_seq5
347bp
 _putative_cuticle_protein_[Bombyx_mori]
GO:0001055 F RNA polymerase II activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
355 O_BomoOtmSK1031_5prime_partial:A_BomoOtmSK_comp4458_c0_seq1
108bp
356 O_BomoOtmSK10320_complete:A_BomoOtmSK_comp13484_c0_seq6
337bp
 _putative_cuticle_protein_[Bombyx_mori]
GO:0001055 F RNA polymerase II activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
357 O_BomoOtmSK10321_complete:A_BomoOtmSK_comp13484_c0_seq7
385bp
 _putative_cuticle_protein_[Bombyx_mori]
GO:0001055 F RNA polymerase II activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
358 O_BomoOtmSK10322_5prime_partial:A_BomoOtmSK_comp13484_c0_seq8
170bp
 _putative_cuticle_protein_[Bombyx_mori]
359 O_BomoOtmSK10323_complete:A_BomoOtmSK_comp13484_c0_seq9
367bp
 _putative_cuticle_protein_[Bombyx_mori]
GO:0001055 F RNA polymerase II activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
360 O_BomoOtmSK10324_complete:A_BomoOtmSK_comp13484_c0_seq10
381bp
 _putative_cuticle_protein_[Bombyx_mori]
GO:0001055 F RNA polymerase II activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
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