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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3511 O_BomoOtmSK13160_complete:A_BomoOtmSK_comp14576_c0_seq3
115bp
3512 O_BomoOtmSK13161_internal:A_BomoOtmSK_comp14577_c0_seq1
300bp
 dmX-like_protein_2_[Bombyx_mori]
GO:0005615 C extracellular space
GO:0008021 C synaptic vesicle
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0017137 F small GTPase binding
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
3513 O_BomoOtmSK13162_5prime_partial:A_BomoOtmSK_comp14577_c0_seq1
126bp
3514 O_BomoOtmSK13163_3prime_partial:A_BomoOtmSK_comp14577_c0_seq1
103bp
3515 O_BomoOtmSK13164_complete:A_BomoOtmSK_comp14578_c0_seq1
164bp
 tRNA-specific_adenosine_deaminase_2_[Bombyx_mori]
GO:0002100 P tRNA wobble adenosine to inosine editing
GO:0003824 F catalytic activity
GO:0006400 P tRNA modification
GO:0008033 P tRNA processing
GO:0008251 F tRNA-specific adenosine deaminase activity
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0052717 F tRNA-specific adenosine-34 deaminase activity
GO:0052718 C tRNA-specific adenosine-34 deaminase complex
3516 O_BomoOtmSK13165_complete:A_BomoOtmSK_comp14578_c0_seq1
105bp
 single-strand_selective_monofunctional_uracil-DNA_glycosylase_[Bombyx_mori]
GO:0000702 F oxidized base lesion DNA N-glycosylase activity
GO:0000703 F oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004844 F uracil DNA N-glycosylase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006281 P DNA repair
GO:0006284 P base-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0017065 F single-strand selective uracil DNA N-glycosylase activity
GO:0019104 F DNA N-glycosylase activity
GO:0031981 C nuclear lumen
3517 O_BomoOtmSK13166_complete:A_BomoOtmSK_comp14578_c0_seq2
164bp
 tRNA-specific_adenosine_deaminase_2_[Bombyx_mori]
GO:0002100 P tRNA wobble adenosine to inosine editing
GO:0003824 F catalytic activity
GO:0006400 P tRNA modification
GO:0008033 P tRNA processing
GO:0008251 F tRNA-specific adenosine deaminase activity
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0052717 F tRNA-specific adenosine-34 deaminase activity
GO:0052718 C tRNA-specific adenosine-34 deaminase complex
3518 O_BomoOtmSK13167_complete:A_BomoOtmSK_comp14578_c0_seq2
105bp
 single-strand_selective_monofunctional_uracil-DNA_glycosylase_[Bombyx_mori]
GO:0000702 F oxidized base lesion DNA N-glycosylase activity
GO:0000703 F oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004844 F uracil DNA N-glycosylase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006281 P DNA repair
GO:0006284 P base-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0017065 F single-strand selective uracil DNA N-glycosylase activity
GO:0019104 F DNA N-glycosylase activity
GO:0031981 C nuclear lumen
3519 O_BomoOtmSK13168_complete:A_BomoOtmSK_comp14578_c0_seq3
164bp
 tRNA-specific_adenosine_deaminase_2_[Bombyx_mori]
GO:0002100 P tRNA wobble adenosine to inosine editing
GO:0003824 F catalytic activity
GO:0006400 P tRNA modification
GO:0008033 P tRNA processing
GO:0008251 F tRNA-specific adenosine deaminase activity
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0052717 F tRNA-specific adenosine-34 deaminase activity
GO:0052718 C tRNA-specific adenosine-34 deaminase complex
3520 O_BomoOtmSK13169_complete:A_BomoOtmSK_comp14578_c0_seq3
105bp
 single-strand_selective_monofunctional_uracil-DNA_glycosylase_[Bombyx_mori]
GO:0000702 F oxidized base lesion DNA N-glycosylase activity
GO:0000703 F oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004844 F uracil DNA N-glycosylase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006281 P DNA repair
GO:0006284 P base-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0017065 F single-strand selective uracil DNA N-glycosylase activity
GO:0019104 F DNA N-glycosylase activity
GO:0031981 C nuclear lumen
3521 O_BomoOtmSK1316_5prime_partial:A_BomoOtmSK_comp4861_c0_seq1
105bp
3522 O_BomoOtmSK13170_complete:A_BomoOtmSK_comp14578_c0_seq4
164bp
 tRNA-specific_adenosine_deaminase_2_[Bombyx_mori]
GO:0002100 P tRNA wobble adenosine to inosine editing
GO:0003824 F catalytic activity
GO:0006400 P tRNA modification
GO:0008033 P tRNA processing
GO:0008251 F tRNA-specific adenosine deaminase activity
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0052717 F tRNA-specific adenosine-34 deaminase activity
GO:0052718 C tRNA-specific adenosine-34 deaminase complex
3523 O_BomoOtmSK13171_complete:A_BomoOtmSK_comp14578_c0_seq4
105bp
 single-strand_selective_monofunctional_uracil-DNA_glycosylase_[Bombyx_mori]
GO:0000702 F oxidized base lesion DNA N-glycosylase activity
GO:0000703 F oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004844 F uracil DNA N-glycosylase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006281 P DNA repair
GO:0006284 P base-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0017065 F single-strand selective uracil DNA N-glycosylase activity
GO:0019104 F DNA N-glycosylase activity
GO:0031981 C nuclear lumen
3524 O_BomoOtmSK13172_complete:A_BomoOtmSK_comp14578_c0_seq5
164bp
 tRNA-specific_adenosine_deaminase_2_[Bombyx_mori]
GO:0002100 P tRNA wobble adenosine to inosine editing
GO:0003824 F catalytic activity
GO:0006400 P tRNA modification
GO:0008033 P tRNA processing
GO:0008251 F tRNA-specific adenosine deaminase activity
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0052717 F tRNA-specific adenosine-34 deaminase activity
GO:0052718 C tRNA-specific adenosine-34 deaminase complex
3525 O_BomoOtmSK13173_complete:A_BomoOtmSK_comp14578_c0_seq5
105bp
 single-strand_selective_monofunctional_uracil-DNA_glycosylase_[Bombyx_mori]
GO:0000702 F oxidized base lesion DNA N-glycosylase activity
GO:0000703 F oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004844 F uracil DNA N-glycosylase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006281 P DNA repair
GO:0006284 P base-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0017065 F single-strand selective uracil DNA N-glycosylase activity
GO:0019104 F DNA N-glycosylase activity
GO:0031981 C nuclear lumen
3526 O_BomoOtmSK13174_5prime_partial:A_BomoOtmSK_comp14579_c0_seq1
147bp
3527 O_BomoOtmSK13175_5prime_partial:A_BomoOtmSK_comp14579_c0_seq1
124bp
 CUB_and_sushi_domain-containing_protein_3_isoform_X1_[Bombyx_mori]
3528 O_BomoOtmSK13176_5prime_partial:A_BomoOtmSK_comp14579_c1_seq1
161bp
3529 O_BomoOtmSK13177_complete:A_BomoOtmSK_comp14579_c1_seq1
140bp
3530 O_BomoOtmSK13178_5prime_partial:A_BomoOtmSK_comp14579_c1_seq2
203bp
 uncharacterized_protein_LOC101736716_[Bombyx_mori]
3531 O_BomoOtmSK13179_complete:A_BomoOtmSK_comp14579_c1_seq2
140bp
3532 O_BomoOtmSK1317_internal:A_BomoOtmSK_comp4861_c0_seq2
106bp
3533 O_BomoOtmSK13180_complete:A_BomoOtmSK_comp14580_c0_seq2
452bp
 Heterogeneous_nuclear_ribonucleoprotein_A1_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
3534 O_BomoOtmSK13181_complete:A_BomoOtmSK_comp14580_c0_seq2
102bp
3535 O_BomoOtmSK13182_complete:A_BomoOtmSK_comp14580_c0_seq3
452bp
 Heterogeneous_nuclear_ribonucleoprotein_A1_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
3536 O_BomoOtmSK13183_complete:A_BomoOtmSK_comp14582_c0_seq1
479bp
 organic_cation_transporter_protein_[Bombyx_mori]
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0007390 P germ-band shortening
GO:0008324 F cation transmembrane transporter activity
GO:0015101 F organic cation transmembrane transporter activity
GO:0015695 P organic cation transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0030307 P positive regulation of cell growth
GO:0040018 P positive regulation of multicellular organism growth
GO:0055085 P transmembrane transport
GO:0098655 P cation transmembrane transport
3537 O_BomoOtmSK13184_complete:A_BomoOtmSK_comp14582_c0_seq1
103bp
3538 O_BomoOtmSK13185_complete:A_BomoOtmSK_comp14583_c0_seq1
327bp
 nuclear_pore_complex_protein_Nup98-Nup96_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000776 C kinetochore
GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0003723 F RNA binding
GO:0005215 F transporter activity
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005829 C cytosol
GO:0006260 P DNA replication
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0006999 P nuclear pore organization
GO:0007062 P sister chromatid cohesion
GO:0007077 P mitotic nuclear membrane disassembly
GO:0008139 F nuclear localization sequence binding
GO:0010827 P regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016925 P protein sumoylation
GO:0017056 F structural constituent of nuclear pore
GO:0019083 P viral transcription
GO:0031047 P gene silencing by RNA
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0034398 P telomere tethering at nuclear periphery
GO:0034399 C nuclear periphery
GO:0042277 F peptide binding
GO:0042405 C nuclear inclusion body
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0044615 C nuclear pore nuclear basket
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
GO:0075733 P intracellular transport of virus
GO:1900034 P regulation of cellular response to heat
3539 O_BomoOtmSK13186_5prime_partial:A_BomoOtmSK_comp14583_c0_seq1
113bp
3540 O_BomoOtmSK13187_3prime_partial:A_BomoOtmSK_comp14584_c1_seq4
276bp
 importin-7_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005887 C integral component of plasma membrane
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0007165 P signal transduction
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0055085 P transmembrane transport
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