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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3211 O_BomoOtmSK12891_5prime_partial:A_BomoOtmSK_comp14471_c0_seq1
232bp
 EN_protein_binding/engrailed_nuclear_homeoprotein-regulated_protein_[Bombyx_mori]
3212 O_BomoOtmSK12892_complete:A_BomoOtmSK_comp14471_c0_seq1
126bp
3213 O_BomoOtmSK12893_complete:A_BomoOtmSK_comp14472_c0_seq1
317bp
 mitochondrial_uncoupling_protein_4_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006091 P generation of precursor metabolites and energy
GO:0006412 P translation
GO:0006810 P transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3214 O_BomoOtmSK12894_3prime_partial:A_BomoOtmSK_comp14474_c0_seq1
172bp
 uncharacterized_LOC101745204_[Bombyx_mori]
3215 O_BomoOtmSK12895_complete:A_BomoOtmSK_comp14475_c1_seq1
160bp
 RNA-binding_protein_1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035327 C euchromatin
GO:0045292 P mRNA cis splicing, via spliceosome
3216 O_BomoOtmSK12896_complete:A_BomoOtmSK_comp14475_c1_seq1
108bp
3217 O_BomoOtmSK12897_complete:A_BomoOtmSK_comp14475_c1_seq2
157bp
 RNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035327 C euchromatin
GO:0045292 P mRNA cis splicing, via spliceosome
3218 O_BomoOtmSK12898_complete:A_BomoOtmSK_comp14475_c1_seq3
160bp
 RNA-binding_protein_1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035327 C euchromatin
GO:0045292 P mRNA cis splicing, via spliceosome
3219 O_BomoOtmSK12899_complete:A_BomoOtmSK_comp14475_c1_seq4
179bp
3220 O_BomoOtmSK1289_complete:A_BomoOtmSK_comp4845_c0_seq1
138bp
3221 O_BomoOtmSK128_internal:A_BomoOtmSK_comp495_c0_seq1
224bp
 uncharacterized_protein_LOC101740438_isoform_X6_[Bombyx_mori]
3222 O_BomoOtmSK12900_complete:A_BomoOtmSK_comp14475_c1_seq4
143bp
 RNA-binding_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035327 C euchromatin
GO:0045292 P mRNA cis splicing, via spliceosome
3223 O_BomoOtmSK12901_complete:A_BomoOtmSK_comp14475_c1_seq5
157bp
 RNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035327 C euchromatin
GO:0045292 P mRNA cis splicing, via spliceosome
3224 O_BomoOtmSK12902_complete:A_BomoOtmSK_comp14475_c1_seq5
108bp
3225 O_BomoOtmSK12903_complete:A_BomoOtmSK_comp14478_c0_seq2
427bp
 flotillin-1_isoform_X2_[Bombyx_mori]
GO:0005198 F structural molecule activity
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005901 C caveola
GO:0007275 P multicellular organism development
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016600 C flotillin complex
3226 O_BomoOtmSK12904_complete:A_BomoOtmSK_comp14478_c0_seq2
163bp
3227 O_BomoOtmSK12905_complete:A_BomoOtmSK_comp14479_c0_seq1
486bp
 limbic_system-associated_membrane_protein_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005918 C septate junction
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007275 P multicellular organism development
GO:0007424 P open tracheal system development
GO:0016020 C membrane
GO:0016331 P morphogenesis of embryonic epithelium
GO:0019898 C extrinsic component of membrane
GO:0019991 P septate junction assembly
GO:0031225 C anchored component of membrane
GO:0035151 P regulation of tube size, open tracheal system
GO:0035160 P maintenance of epithelial integrity, open tracheal system
GO:0042803 F protein homodimerization activity
GO:0061343 P cell adhesion involved in heart morphogenesis
3228 O_BomoOtmSK12906_complete:A_BomoOtmSK_comp14480_c0_seq1
826bp
 peroxidase_[Bombyx_mori]
GO:0004601 F peroxidase activity
GO:0005576 C extracellular region
GO:0006979 P response to oxidative stress
GO:0016491 F oxidoreductase activity
GO:0020037 F heme binding
GO:0042744 P hydrogen peroxide catabolic process
GO:0046872 F metal ion binding
GO:0048477 P oogenesis
GO:0055114 P obsolete oxidation-reduction process
GO:0098869 P cellular oxidant detoxification
3229 O_BomoOtmSK12907_complete:A_BomoOtmSK_comp14480_c0_seq1
133bp
3230 O_BomoOtmSK12908_5prime_partial:A_BomoOtmSK_comp14481_c0_seq1
396bp
 PREDICTED:_uncharacterized_protein_LOC105385776,_partial_[Plutella_xylostella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003693 F P-element binding
GO:0004803 F transposase activity
GO:0006310 P DNA recombination
GO:0006313 P transposition, DNA-mediated
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0046872 F metal ion binding
3231 O_BomoOtmSK12909_3prime_partial:A_BomoOtmSK_comp14482_c0_seq2
103bp
3232 O_BomoOtmSK1290_complete:A_BomoOtmSK_comp4845_c0_seq1
112bp
 hypothetical_protein_SD81_43325_[Tolypothrix_campylonemoides_VB511288]
3233 O_BomoOtmSK12910_5prime_partial:A_BomoOtmSK_comp14483_c0_seq1
213bp
 uncharacterized_protein_LOC101739898_isoform_X2_[Bombyx_mori]
3234 O_BomoOtmSK12911_complete:A_BomoOtmSK_comp14483_c0_seq1
107bp
3235 O_BomoOtmSK12912_5prime_partial:A_BomoOtmSK_comp14483_c0_seq2
200bp
 uncharacterized_protein_LOC101739898_isoform_X2_[Bombyx_mori]
3236 O_BomoOtmSK12913_complete:A_BomoOtmSK_comp14483_c0_seq2
100bp
3237 O_BomoOtmSK12914_complete:A_BomoOtmSK_comp14484_c0_seq1
409bp
 structural_maintenance_of_chromosomes_protein_1A_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000776 C kinetochore
GO:0003682 F chromatin binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007064 P mitotic sister chromatid cohesion
GO:0007067 P mitotic cell cycle
GO:0007093 P mitotic cell cycle checkpoint signaling
GO:0007126 P meiotic cell cycle
GO:0008280 C cohesin complex
GO:0009314 P response to radiation
GO:0030893 C meiotic cohesin complex
GO:0042770 P signal transduction in response to DNA damage
GO:0051276 P chromosome organization
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
3238 O_BomoOtmSK12915_complete:A_BomoOtmSK_comp14484_c0_seq1
213bp
3239 O_BomoOtmSK12916_complete:A_BomoOtmSK_comp14484_c0_seq1
102bp
3240 O_BomoOtmSK12917_complete:A_BomoOtmSK_comp14484_c0_seq2
1221bp
 structural_maintenance_of_chromosomes_protein_1A_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0003682 F chromatin binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007064 P mitotic sister chromatid cohesion
GO:0007067 P mitotic cell cycle
GO:0007093 P mitotic cell cycle checkpoint signaling
GO:0007126 P meiotic cell cycle
GO:0008280 C cohesin complex
GO:0009314 P response to radiation
GO:0030893 C meiotic cohesin complex
GO:0042770 P signal transduction in response to DNA damage
GO:0051276 P chromosome organization
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
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