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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3121 O_BomoOtmSK1280_complete:A_BomoOtmSK_comp4832_c0_seq1
129bp
3122 O_BomoOtmSK12810_5prime_partial:A_BomoOtmSK_comp14441_c0_seq1
321bp
 pre-mRNA-splicing_factor_38_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
3123 O_BomoOtmSK12811_complete:A_BomoOtmSK_comp14441_c0_seq1
181bp
3124 O_BomoOtmSK12812_internal:A_BomoOtmSK_comp14441_c0_seq2
280bp
 pre-mRNA-splicing_factor_38_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
3125 O_BomoOtmSK12813_3prime_partial:A_BomoOtmSK_comp14441_c0_seq2
131bp
3126 O_BomoOtmSK12814_5prime_partial:A_BomoOtmSK_comp14441_c0_seq2
111bp
3127 O_BomoOtmSK12815_complete:A_BomoOtmSK_comp14442_c0_seq1
402bp
 trafficking_protein_particle_complex_subunit_13_[Bombyx_mori]
3128 O_BomoOtmSK12816_complete:A_BomoOtmSK_comp14442_c0_seq2
402bp
 trafficking_protein_particle_complex_subunit_13_[Bombyx_mori]
3129 O_BomoOtmSK12817_5prime_partial:A_BomoOtmSK_comp14443_c0_seq1
215bp
 poly(U)-binding-splicing_factor_half_pint_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000380 P alternative mRNA splicing, via spliceosome
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001558 P regulation of cell growth
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007275 P multicellular organism development
GO:0007282 P cystoblast division
GO:0008266 F poly(U) RNA binding
GO:0008380 P RNA splicing
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0043234 C protein-containing complex
GO:0048477 P oogenesis
GO:0051726 P regulation of cell cycle
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
3130 O_BomoOtmSK12818_5prime_partial:A_BomoOtmSK_comp14443_c0_seq1
126bp
3131 O_BomoOtmSK12819_complete:A_BomoOtmSK_comp14444_c0_seq1
566bp
 glycogen-binding_subunit_76A_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008157 F protein phosphatase 1 binding
3132 O_BomoOtmSK1281_3prime_partial:A_BomoOtmSK_comp4832_c0_seq2
318bp
 protein_spire_isoform_X4_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0006810 P transport
GO:0007015 P actin filament organization
GO:0007275 P multicellular organism development
GO:0007304 P chorion-containing eggshell formation
GO:0007315 P pole plasm assembly
GO:0007316 P pole plasm RNA localization
GO:0008017 F microtubule binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030029 P actin filament-based process
GO:0030036 P actin cytoskeleton organization
GO:0030659 C cytoplasmic vesicle membrane
GO:0030717 P oocyte karyosome formation
GO:0031410 C cytoplasmic vesicle
GO:0045010 P actin nucleation
GO:0045451 P pole plasm oskar mRNA localization
GO:0048471 C perinuclear region of cytoplasm
GO:0048477 P oogenesis
GO:0051493 P regulation of cytoskeleton organization
GO:0051639 P actin filament network formation
3133 O_BomoOtmSK12820_internal:A_BomoOtmSK_comp14445_c0_seq1
473bp
 la-related_protein_7_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006396 P RNA processing
GO:0030529 C ribonucleoprotein complex
3134 O_BomoOtmSK12821_complete:A_BomoOtmSK_comp14445_c0_seq1
102bp
3135 O_BomoOtmSK12822_3prime_partial:A_BomoOtmSK_comp14445_c0_seq2
458bp
 la-related_protein_7_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006396 P RNA processing
GO:0030529 C ribonucleoprotein complex
3136 O_BomoOtmSK12823_complete:A_BomoOtmSK_comp14445_c0_seq2
102bp
3137 O_BomoOtmSK12824_3prime_partial:A_BomoOtmSK_comp14448_c0_seq1
121bp
 putative_RNA-binding_protein_Luc7-like_2_isoform_X3_[Bombyx_mori]
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006376 P mRNA splice site selection
GO:0042802 F identical protein binding
GO:0045843 P negative regulation of striated muscle tissue development
GO:0050733 F RS domain binding
GO:0071004 C U2-type prespliceosome
3138 O_BomoOtmSK12825_3prime_partial:A_BomoOtmSK_comp14448_c0_seq2
121bp
 putative_RNA-binding_protein_Luc7-like_2_isoform_X3_[Bombyx_mori]
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006376 P mRNA splice site selection
GO:0042802 F identical protein binding
GO:0045843 P negative regulation of striated muscle tissue development
GO:0050733 F RS domain binding
GO:0071004 C U2-type prespliceosome
3139 O_BomoOtmSK12826_3prime_partial:A_BomoOtmSK_comp14448_c0_seq3
121bp
 putative_RNA-binding_protein_Luc7-like_2_isoform_X3_[Bombyx_mori]
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006376 P mRNA splice site selection
GO:0042802 F identical protein binding
GO:0045843 P negative regulation of striated muscle tissue development
GO:0050733 F RS domain binding
GO:0071004 C U2-type prespliceosome
3140 O_BomoOtmSK12827_3prime_partial:A_BomoOtmSK_comp14448_c0_seq4
268bp
 putative_RNA-binding_protein_Luc7-like_2_isoform_X1_[Bombyx_mori]
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006376 P mRNA splice site selection
GO:0042802 F identical protein binding
GO:0045843 P negative regulation of striated muscle tissue development
GO:0050733 F RS domain binding
GO:0071004 C U2-type prespliceosome
3141 O_BomoOtmSK12828_3prime_partial:A_BomoOtmSK_comp14448_c0_seq5
215bp
 putative_RNA-binding_protein_Luc7-like_2_isoform_X3_[Bombyx_mori]
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006376 P mRNA splice site selection
GO:0042802 F identical protein binding
GO:0045843 P negative regulation of striated muscle tissue development
GO:0050733 F RS domain binding
GO:0071004 C U2-type prespliceosome
3142 O_BomoOtmSK12829_3prime_partial:A_BomoOtmSK_comp14448_c0_seq6
121bp
 putative_RNA-binding_protein_Luc7-like_2_isoform_X3_[Bombyx_mori]
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006376 P mRNA splice site selection
GO:0042802 F identical protein binding
GO:0045843 P negative regulation of striated muscle tissue development
GO:0050733 F RS domain binding
GO:0071004 C U2-type prespliceosome
3143 O_BomoOtmSK1282_complete:A_BomoOtmSK_comp4840_c0_seq1
353bp
 nicotinate_phosphoribosyltransferase_isoform_X1_[Bombyx_mori]
GO:0004514 F nicotinate-nucleotide diphosphorylase (carboxylating) activity
GO:0004516 F nicotinate phosphoribosyltransferase activity
GO:0005829 C cytosol
GO:0006979 P response to oxidative stress
GO:0009435 P NAD biosynthetic process
GO:0016740 F transferase activity
GO:0016874 F ligase activity
GO:0019358 P nicotinate nucleotide salvage
GO:0019363 P pyridine nucleotide biosynthetic process
3144 O_BomoOtmSK12830_3prime_partial:A_BomoOtmSK_comp14448_c0_seq7
227bp
 putative_RNA-binding_protein_Luc7-like_2_isoform_X2_[Bombyx_mori]
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006376 P mRNA splice site selection
GO:0042802 F identical protein binding
GO:0045843 P negative regulation of striated muscle tissue development
GO:0050733 F RS domain binding
GO:0071004 C U2-type prespliceosome
3145 O_BomoOtmSK12831_3prime_partial:A_BomoOtmSK_comp14448_c0_seq8
215bp
 putative_RNA-binding_protein_Luc7-like_2_isoform_X3_[Bombyx_mori]
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006376 P mRNA splice site selection
GO:0042802 F identical protein binding
GO:0045843 P negative regulation of striated muscle tissue development
GO:0050733 F RS domain binding
GO:0071004 C U2-type prespliceosome
3146 O_BomoOtmSK12832_3prime_partial:A_BomoOtmSK_comp14448_c0_seq9
121bp
 putative_RNA-binding_protein_Luc7-like_2_isoform_X3_[Bombyx_mori]
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006376 P mRNA splice site selection
GO:0042802 F identical protein binding
GO:0045843 P negative regulation of striated muscle tissue development
GO:0050733 F RS domain binding
GO:0071004 C U2-type prespliceosome
3147 O_BomoOtmSK12833_3prime_partial:A_BomoOtmSK_comp14448_c0_seq10
121bp
 putative_RNA-binding_protein_Luc7-like_2_isoform_X3_[Bombyx_mori]
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006376 P mRNA splice site selection
GO:0042802 F identical protein binding
GO:0045843 P negative regulation of striated muscle tissue development
GO:0050733 F RS domain binding
GO:0071004 C U2-type prespliceosome
3148 O_BomoOtmSK12834_3prime_partial:A_BomoOtmSK_comp14448_c0_seq11
215bp
 putative_RNA-binding_protein_Luc7-like_2_isoform_X3_[Bombyx_mori]
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006376 P mRNA splice site selection
GO:0042802 F identical protein binding
GO:0045843 P negative regulation of striated muscle tissue development
GO:0050733 F RS domain binding
GO:0071004 C U2-type prespliceosome
3149 O_BomoOtmSK12835_3prime_partial:A_BomoOtmSK_comp14448_c0_seq12
215bp
 putative_RNA-binding_protein_Luc7-like_2_isoform_X3_[Bombyx_mori]
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006376 P mRNA splice site selection
GO:0042802 F identical protein binding
GO:0045843 P negative regulation of striated muscle tissue development
GO:0050733 F RS domain binding
GO:0071004 C U2-type prespliceosome
3150 O_BomoOtmSK12836_complete:A_BomoOtmSK_comp14449_c0_seq1
717bp
 PREDICTED:_histone-lysine_N-methyltransferase_E(z)_isoform_X1_[Papilio_xuthus]
GO:0000790 C chromatin
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006723 P cuticle hydrocarbon biosynthetic process
GO:0007275 P multicellular organism development
GO:0007411 P axon guidance
GO:0007517 P muscle organ development
GO:0008168 F methyltransferase activity
GO:0016458 P obsolete gene silencing
GO:0016568 P chromatin organization
GO:0016571 P histone methylation
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0022008 P neurogenesis
GO:0032259 P methylation
GO:0035097 C histone methyltransferase complex
GO:0035098 C ESC/E(Z) complex
GO:0035186 P syncytial blastoderm mitotic cell cycle
GO:0042054 F histone methyltransferase activity
GO:0042810 P pheromone metabolic process
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046974 F histone methyltransferase activity (H3-K9 specific)
GO:0046976 F histone methyltransferase activity (H3-K27 specific)
GO:0048813 P dendrite morphogenesis
GO:0051567 P histone H3-K9 methylation
GO:0070734 P histone H3-K27 methylation
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