SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/35878
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
31 O_BomoOtmSK10028_complete:A_BomoOtmSK_comp13398_c0_seq1
968bp
 alanine--tRNA_ligase,_cytoplasmic_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004813 F alanine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006419 P alanyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0016876 F aminoacyl-tRNA ligase activity
GO:0043039 P tRNA aminoacylation
GO:0046872 F metal ion binding
32 O_BomoOtmSK10029_complete:A_BomoOtmSK_comp13400_c0_seq1
332bp
 protein_HEXIM_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0004861 F cyclin-dependent protein serine/threonine kinase inhibitor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007507 P heart development
GO:0017069 F snRNA binding
GO:0045736 P negative regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0097322 F 7SK snRNA binding
GO:1901798 P positive regulation of signal transduction by p53 class mediator
33 O_BomoOtmSK1002_complete:A_BomoOtmSK_comp4403_c0_seq1
595bp
 LOW_QUALITY_PROTEIN:_tRNA_(uracil-5-)-methyltransferase_homolog_A_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001510 P RNA methylation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0006396 P RNA processing
GO:0008168 F methyltransferase activity
GO:0008173 F RNA methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0044822 F RNA binding
34 O_BomoOtmSK10030_5prime_partial:A_BomoOtmSK_comp13401_c0_seq1
422bp
 serine/threonine_protein_kinase_Akt,_partial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0006629 P lipid metabolic process
GO:0006915 P apoptotic process
GO:0006979 P response to oxidative stress
GO:0007275 P multicellular organism development
GO:0007424 P open tracheal system development
GO:0007427 P epithelial cell migration, open tracheal system
GO:0007520 P myoblast fusion
GO:0007525 P somatic muscle development
GO:0007623 P circadian rhythm
GO:0008284 P positive regulation of cell population proliferation
GO:0008286 P insulin receptor signaling pathway
GO:0008360 P regulation of cell shape
GO:0008361 P regulation of cell size
GO:0008362 P chitin-based embryonic cuticle biosynthetic process
GO:0009986 C cell surface
GO:0010906 P regulation of glucose metabolic process
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0019915 P lipid storage
GO:0030307 P positive regulation of cell growth
GO:0031104 P dendrite regeneration
GO:0035091 F phosphatidylinositol binding
GO:0035206 P regulation of hemocyte proliferation
GO:0035264 P multicellular organism growth
GO:0035556 P intracellular signal transduction
GO:0040008 P regulation of growth
GO:0040014 P regulation of multicellular organism growth
GO:0040018 P positive regulation of multicellular organism growth
GO:0042306 P regulation of protein import into nucleus
GO:0043025 C neuronal cell body
GO:0043066 P negative regulation of apoptotic process
GO:0045793 P positive regulation of cell size
GO:0045886 P negative regulation of synaptic assembly at neuromuscular junction
GO:0046620 P regulation of organ growth
GO:0046622 P positive regulation of organ growth
GO:0048477 P oogenesis
GO:0048680 P positive regulation of axon regeneration
GO:0050773 P regulation of dendrite development
GO:0060292 P long-term synaptic depression
GO:0090278 P negative regulation of peptide hormone secretion
GO:1901215 P negative regulation of neuron death
35 O_BomoOtmSK10031_3prime_partial:A_BomoOtmSK_comp13401_c0_seq1
122bp
36 O_BomoOtmSK10032_complete:A_BomoOtmSK_comp13401_c0_seq2
494bp
 serine/threonine_protein_kinase_Akt,_partial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0006629 P lipid metabolic process
GO:0006915 P apoptotic process
GO:0006979 P response to oxidative stress
GO:0007275 P multicellular organism development
GO:0007424 P open tracheal system development
GO:0007427 P epithelial cell migration, open tracheal system
GO:0007520 P myoblast fusion
GO:0007525 P somatic muscle development
GO:0007623 P circadian rhythm
GO:0008284 P positive regulation of cell population proliferation
GO:0008286 P insulin receptor signaling pathway
GO:0008360 P regulation of cell shape
GO:0008361 P regulation of cell size
GO:0008362 P chitin-based embryonic cuticle biosynthetic process
GO:0009986 C cell surface
GO:0010906 P regulation of glucose metabolic process
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0019915 P lipid storage
GO:0030307 P positive regulation of cell growth
GO:0031104 P dendrite regeneration
GO:0035091 F phosphatidylinositol binding
GO:0035206 P regulation of hemocyte proliferation
GO:0035264 P multicellular organism growth
GO:0035556 P intracellular signal transduction
GO:0040008 P regulation of growth
GO:0040014 P regulation of multicellular organism growth
GO:0040018 P positive regulation of multicellular organism growth
GO:0042306 P regulation of protein import into nucleus
GO:0043025 C neuronal cell body
GO:0043066 P negative regulation of apoptotic process
GO:0045793 P positive regulation of cell size
GO:0045886 P negative regulation of synaptic assembly at neuromuscular junction
GO:0046620 P regulation of organ growth
GO:0046622 P positive regulation of organ growth
GO:0048477 P oogenesis
GO:0048680 P positive regulation of axon regeneration
GO:0050773 P regulation of dendrite development
GO:0060292 P long-term synaptic depression
GO:0090278 P negative regulation of peptide hormone secretion
GO:1901215 P negative regulation of neuron death
37 O_BomoOtmSK10033_complete:A_BomoOtmSK_comp13401_c0_seq2
122bp
38 O_BomoOtmSK10034_5prime_partial:A_BomoOtmSK_comp13401_c0_seq2
100bp
39 O_BomoOtmSK10035_5prime_partial:A_BomoOtmSK_comp13403_c0_seq1
236bp
 WD_repeat-containing_protein_3_[Bombyx_mori]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030515 F snoRNA binding
GO:0031965 C nuclear membrane
GO:0032040 C small-subunit processome
GO:0034388 C Pwp2p-containing subcomplex of 90S preribosome
GO:0044822 F RNA binding
40 O_BomoOtmSK10036_complete:A_BomoOtmSK_comp13404_c0_seq1
465bp
 broad-complex_core_protein_isoforms_1/2/3/4/5_[Bombyx_mori]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001752 P compound eye photoreceptor fate commitment
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0006914 P autophagy
GO:0007275 P multicellular organism development
GO:0007458 P progression of morphogenetic furrow involved in compound eye morphogenesis
GO:0007552 P metamorphosis
GO:0007562 P eclosion
GO:0008219 P cell death
GO:0009608 P response to symbiont
GO:0010629 P negative regulation of gene expression
GO:0010906 P regulation of glucose metabolic process
GO:0030707 P ovarian follicle cell development
GO:0035070 P salivary gland histolysis
GO:0035071 P salivary gland cell autophagic cell death
GO:0035072 P ecdysone-mediated induction of salivary gland cell autophagic cell death
GO:0035075 P response to ecdysone
GO:0035193 P larval central nervous system remodeling
GO:0040034 P regulation of development, heterochronic
GO:0042332 P gravitaxis
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048477 P oogenesis
GO:0048747 P muscle cell development
GO:0048808 P male genitalia morphogenesis
GO:0048813 P dendrite morphogenesis
GO:0071390 P cellular response to ecdysone
41 O_BomoOtmSK10037_internal:A_BomoOtmSK_comp13405_c0_seq1
480bp
 uncharacterized_protein_LOC101736905_[Bombyx_mori]
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0006914 P autophagy
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0021680 P cerebellar Purkinje cell layer development
GO:0030425 C dendrite
GO:0030902 P hindbrain development
GO:0031902 C late endosome membrane
GO:0035091 F phosphatidylinositol binding
GO:0042995 C cell projection
GO:0080025 F phosphatidylinositol-3,5-bisphosphate binding
GO:0097352 P autophagosome maturation
42 O_BomoOtmSK10038_complete:A_BomoOtmSK_comp13407_c0_seq1
116bp
 protein_GUCD1_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
43 O_BomoOtmSK10039_complete:A_BomoOtmSK_comp13407_c0_seq2
203bp
44 O_BomoOtmSK1003_complete:A_BomoOtmSK_comp4404_c0_seq1
168bp
 glycine_cleavage_system_H_protein,_mitochondrial_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005960 C glycine cleavage complex
GO:0006546 P glycine catabolic process
GO:0019464 P glycine decarboxylation via glycine cleavage system
GO:0035220 P wing disc development
45 O_BomoOtmSK10040_complete:A_BomoOtmSK_comp13407_c0_seq2
151bp
 protein_GUCD1_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
46 O_BomoOtmSK10041_complete:A_BomoOtmSK_comp13407_c0_seq3
153bp
47 O_BomoOtmSK10042_complete:A_BomoOtmSK_comp13407_c0_seq3
138bp
 protein_GUCD1_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
48 O_BomoOtmSK10043_complete:A_BomoOtmSK_comp13407_c0_seq3
116bp
 protein_GUCD1_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
49 O_BomoOtmSK10044_complete:A_BomoOtmSK_comp13407_c0_seq4
168bp
 protein_GUCD1_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
50 O_BomoOtmSK10045_complete:A_BomoOtmSK_comp13407_c0_seq4
101bp
51 O_BomoOtmSK10046_complete:A_BomoOtmSK_comp13407_c0_seq5
123bp
52 O_BomoOtmSK10047_complete:A_BomoOtmSK_comp13407_c0_seq8
232bp
 protein_GUCD1_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
53 O_BomoOtmSK10048_complete:A_BomoOtmSK_comp13407_c0_seq8
181bp
54 O_BomoOtmSK10049_complete:A_BomoOtmSK_comp13407_c0_seq9
153bp
55 O_BomoOtmSK1004_3prime_partial:A_BomoOtmSK_comp4407_c0_seq1
1126bp
 probable_RNA_helicase_armi,_partial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000578 P embryonic axis specification
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0007275 P multicellular organism development
GO:0007293 P germarium-derived egg chamber formation
GO:0007318 P pole plasm protein localization
GO:0007616 P long-term memory
GO:0016246 P RNA interference
GO:0016787 F hydrolase activity
GO:0030424 C axon
GO:0030425 C dendrite
GO:0031023 P microtubule organizing center organization
GO:0031047 P gene silencing by RNA
GO:0032508 P DNA duplex unwinding
GO:0043025 C neuronal cell body
GO:0043186 C P granule
GO:0045202 C synapse
GO:0046843 P dorsal appendage formation
GO:0048477 P oogenesis
GO:0070725 C Yb body
GO:2000002 P negative regulation of DNA damage checkpoint
56 O_BomoOtmSK10050_complete:A_BomoOtmSK_comp13407_c0_seq9
138bp
 protein_GUCD1_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
57 O_BomoOtmSK10051_complete:A_BomoOtmSK_comp13408_c0_seq2
734bp
 putative_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003725 F double-stranded RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005689 C U12-type spliceosomal complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0009636 P response to toxic substance
GO:0016787 F hydrolase activity
GO:0043279 P response to alkaloid
GO:0044822 F RNA binding
GO:0071008 C U2-type post-mRNA release spliceosomal complex
58 O_BomoOtmSK10052_complete:A_BomoOtmSK_comp13408_c0_seq3
270bp
 putative_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003725 F double-stranded RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005689 C U12-type spliceosomal complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0009636 P response to toxic substance
GO:0016787 F hydrolase activity
GO:0043279 P response to alkaloid
GO:0044822 F RNA binding
GO:0071008 C U2-type post-mRNA release spliceosomal complex
59 O_BomoOtmSK10053_complete:A_BomoOtmSK_comp13408_c0_seq4
442bp
 putative_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003725 F double-stranded RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005689 C U12-type spliceosomal complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0009636 P response to toxic substance
GO:0016787 F hydrolase activity
GO:0043279 P response to alkaloid
GO:0044822 F RNA binding
GO:0071008 C U2-type post-mRNA release spliceosomal complex
60 O_BomoOtmSK10054_complete:A_BomoOtmSK_comp13408_c0_seq4
270bp
 putative_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003725 F double-stranded RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005689 C U12-type spliceosomal complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0009636 P response to toxic substance
GO:0016787 F hydrolase activity
GO:0043279 P response to alkaloid
GO:0044822 F RNA binding
GO:0071008 C U2-type post-mRNA release spliceosomal complex
previous next from show/35878

- SilkBase 1999-2023 -