SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

next from show/35878
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1 O_BomoOtmSK10000_complete:A_BomoOtmSK_comp13374_c0_seq2
184bp
 nudix_hydrolase_8_isoform_X3_[Bombyx_mori]
GO:0005829 C cytosol
GO:0008152 P metabolic process
GO:0009611 P response to wounding
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
2 O_BomoOtmSK10001_complete:A_BomoOtmSK_comp13374_c0_seq3
184bp
 nudix_hydrolase_8_isoform_X3_[Bombyx_mori]
GO:0005829 C cytosol
GO:0008152 P metabolic process
GO:0009611 P response to wounding
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
3 O_BomoOtmSK10002_complete:A_BomoOtmSK_comp13374_c0_seq3
100bp
 nudix_hydrolase_8_isoform_X2_[Bombyx_mori]
GO:0005829 C cytosol
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
4 O_BomoOtmSK10003_5prime_partial:A_BomoOtmSK_comp13375_c0_seq1
155bp
 ras-related_GTP-binding_protein_4b_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005768 C endosome
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030100 P regulation of endocytosis
GO:0032593 C insulin-responsive compartment
5 O_BomoOtmSK10004_complete:A_BomoOtmSK_comp13376_c0_seq1
681bp
 zinc_transporter_foi-like_[Bombyx_mori]
GO:0005385 F zinc ion transmembrane transporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006829 P zinc ion transport
GO:0006882 P cellular zinc ion homeostasis
GO:0007275 P multicellular organism development
GO:0007280 P pole cell migration
GO:0007399 P nervous system development
GO:0007417 P central nervous system development
GO:0007506 P gonadal mesoderm development
GO:0008354 P germ cell migration
GO:0008406 P gonad development
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0016477 P cell migration
GO:0022008 P neurogenesis
GO:0030001 P metal ion transport
GO:0030154 P cell differentiation
GO:0035147 P branch fusion, open tracheal system
GO:0035262 P gonad morphogenesis
GO:0046873 F metal ion transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:0071578 P zinc ion import across plasma membrane
6 O_BomoOtmSK10005_complete:A_BomoOtmSK_comp13376_c0_seq1
193bp
7 O_BomoOtmSK10006_internal:A_BomoOtmSK_comp13377_c0_seq1
273bp
 integrin_alpha-PS3-like_precursor_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0007229 P integrin-mediated signaling pathway
GO:0008305 C integrin complex
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031092 C platelet alpha granule membrane
GO:0046872 F metal ion binding
8 O_BomoOtmSK10007_complete:A_BomoOtmSK_comp13378_c1_seq1
497bp
 uncharacterized_protein_LOC101738379_[Bombyx_mori]
9 O_BomoOtmSK10008_complete:A_BomoOtmSK_comp13379_c0_seq1
326bp
 uncharacterized_protein_LOC101740008_[Bombyx_mori]
10 O_BomoOtmSK10009_complete:A_BomoOtmSK_comp13379_c0_seq2
326bp
 uncharacterized_protein_LOC101740008_[Bombyx_mori]
11 O_BomoOtmSK1000_complete:A_BomoOtmSK_comp4402_c0_seq2
187bp
 uncharacterized_protein_KIAA0930_homolog_[Bombyx_mori]
12 O_BomoOtmSK10010_3prime_partial:A_BomoOtmSK_comp13380_c0_seq1
425bp
 sorting_and_assembly_machinery_component_50_homolog_A_[Bombyx_mori]
GO:0001889 P liver development
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019867 C outer membrane
GO:0042407 P cristae formation
13 O_BomoOtmSK10011_5prime_partial:A_BomoOtmSK_comp13381_c0_seq2
128bp
 protein_bric-a-brac_1-like_isoform_X2_[Helicoverpa_armigera]
14 O_BomoOtmSK10012_complete:A_BomoOtmSK_comp13381_c0_seq3
418bp
 zinc_finger_and_BTB_domain-containing_protein_11_isoform_X1_[Bombyx_mori]
GO:0000785 C chromatin
GO:0000794 C condensed nuclear chromosome
GO:0001672 P regulation of chromatin assembly or disassembly
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005704 C polytene chromosome band
GO:0005730 C nucleolus
GO:0005886 C plasma membrane
GO:0006325 P chromatin organization
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006915 P apoptotic process
GO:0007060 P male meiosis chromosome segregation
GO:0007141 P male meiosis I
GO:0008195 F phosphatidate phosphatase activity
GO:0008354 P germ cell migration
GO:0010032 P meiotic chromosome condensation
GO:0016311 P dephosphorylation
GO:0016568 P chromatin organization
GO:0031208 F POZ domain binding
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
GO:0048477 P oogenesis
15 O_BomoOtmSK10013_complete:A_BomoOtmSK_comp13384_c0_seq1
213bp
 DRK_protein_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0005070 F obsolete SH3/SH2 adaptor activity
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0009967 P positive regulation of signal transduction
GO:0016020 C membrane
16 O_BomoOtmSK10014_complete:A_BomoOtmSK_comp13385_c0_seq1
134bp
 nuclear_envelope_phosphatase-regulatory_subunit_1_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006629 P lipid metabolic process
GO:0010867 P positive regulation of triglyceride biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031965 C nuclear membrane
GO:0034504 P protein localization to nucleus
GO:0035307 P positive regulation of protein dephosphorylation
GO:0071595 C Nem1-Spo7 phosphatase complex
17 O_BomoOtmSK10015_complete:A_BomoOtmSK_comp13385_c0_seq2
130bp
 nuclear_envelope_phosphatase-regulatory_subunit_1_isoform_X2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006629 P lipid metabolic process
GO:0010867 P positive regulation of triglyceride biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031965 C nuclear membrane
GO:0034504 P protein localization to nucleus
GO:0035307 P positive regulation of protein dephosphorylation
GO:0071595 C Nem1-Spo7 phosphatase complex
18 O_BomoOtmSK10016_complete:A_BomoOtmSK_comp13385_c0_seq3
101bp
 nuclear_envelope_phosphatase-regulatory_subunit_1_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006629 P lipid metabolic process
GO:0010867 P positive regulation of triglyceride biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031965 C nuclear membrane
GO:0035307 P positive regulation of protein dephosphorylation
GO:0071595 C Nem1-Spo7 phosphatase complex
19 O_BomoOtmSK10017_complete:A_BomoOtmSK_comp13387_c0_seq1
118bp
 NADH_dehydrogenase_[ubiquinone]_1_subunit_C2_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005747 C mitochondrial respiratory chain complex I
GO:0006120 P mitochondrial electron transport, NADH to ubiquinone
GO:0008137 F NADH dehydrogenase (ubiquinone) activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
20 O_BomoOtmSK10018_complete:A_BomoOtmSK_comp13388_c0_seq1
220bp
 Fanconi_anemia,_complementation_group_I_isoform_X3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0016020 C membrane
GO:0031398 P positive regulation of protein ubiquitination
GO:0036297 P interstrand cross-link repair
GO:0070182 F DNA polymerase binding
21 O_BomoOtmSK10019_3prime_partial:A_BomoOtmSK_comp13388_c0_seq2
446bp
 Fanconi_anemia,_complementation_group_I_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0016020 C membrane
GO:0031398 P positive regulation of protein ubiquitination
GO:0036297 P interstrand cross-link repair
GO:0070182 F DNA polymerase binding
22 O_BomoOtmSK1001_complete:A_BomoOtmSK_comp4402_c0_seq2
174bp
23 O_BomoOtmSK10020_complete:A_BomoOtmSK_comp13389_c0_seq1
347bp
 inverted_formin-2-like_[Bombyx_mori]
24 O_BomoOtmSK10021_complete:A_BomoOtmSK_comp13389_c0_seq1
165bp
25 O_BomoOtmSK10022_complete:A_BomoOtmSK_comp13390_c0_seq1
369bp
 uncharacterized_protein_LOC101738829_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030246 F carbohydrate binding
26 O_BomoOtmSK10023_complete:A_BomoOtmSK_comp13390_c0_seq2
484bp
 uncharacterized_protein_LOC101738829_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005886 C plasma membrane
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030246 F carbohydrate binding
27 O_BomoOtmSK10024_complete:A_BomoOtmSK_comp13390_c0_seq2
107bp
28 O_BomoOtmSK10025_complete:A_BomoOtmSK_comp13391_c0_seq1
116bp
29 O_BomoOtmSK10026_complete:A_BomoOtmSK_comp13391_c0_seq1
111bp
 uncharacterized_protein_LOC100500745_[Bombyx_mori]
GO:0005576 C extracellular region
30 O_BomoOtmSK10027_5prime_partial:A_BomoOtmSK_comp13396_c0_seq1
110bp
next from show/35878

- SilkBase 1999-2023 -