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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3001 O_BomoOtmSK12701_complete:A_BomoOtmSK_comp14411_c0_seq1
585bp
 dihydropyrimidinase_isoform_X2_[Bombyx_mori]
GO:0002058 F uracil binding
GO:0002059 F thymine binding
GO:0004157 F dihydropyrimidinase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006208 P pyrimidine nucleobase catabolic process
GO:0006210 P thymine catabolic process
GO:0006212 P uracil catabolic process
GO:0008270 F zinc ion binding
GO:0016597 F amino acid binding
GO:0016787 F hydrolase activity
GO:0016810 F hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0019482 P beta-alanine metabolic process
GO:0019860 P uracil metabolic process
GO:0046135 P pyrimidine nucleoside catabolic process
GO:0046872 F metal ion binding
GO:0051219 F phosphoprotein binding
GO:0051260 P protein homooligomerization
GO:0051289 P protein homotetramerization
GO:0070062 C extracellular exosome
3002 O_BomoOtmSK12702_complete:A_BomoOtmSK_comp14411_c0_seq1
175bp
3003 O_BomoOtmSK12703_complete:A_BomoOtmSK_comp14411_c0_seq1
119bp
3004 O_BomoOtmSK12704_3prime_partial:A_BomoOtmSK_comp14412_c0_seq1
122bp
 transmembrane_protein_234_homolog_isoform_X3_[Bombyx_mori]
GO:0005887 C integral component of plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
3005 O_BomoOtmSK12705_complete:A_BomoOtmSK_comp14412_c0_seq2
133bp
 transmembrane_protein_234_homolog_isoform_X3_[Bombyx_mori]
GO:0005887 C integral component of plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
3006 O_BomoOtmSK12706_complete:A_BomoOtmSK_comp14414_c0_seq1
906bp
 cap-specific_mRNA_(nucleoside-2'-O-)-methyltransferase_1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0004483 F mRNA (nucleoside-2'-O-)-methyltransferase activity
GO:0005634 C nucleus
GO:0006370 P 7-methylguanosine mRNA capping
GO:0006397 P mRNA processing
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0080009 P mRNA methylation
GO:0097309 P cap1 mRNA methylation
3007 O_BomoOtmSK12707_complete:A_BomoOtmSK_comp14414_c0_seq1
188bp
3008 O_BomoOtmSK12708_5prime_partial:A_BomoOtmSK_comp14415_c0_seq1
1143bp
 timeless_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0048471 C perinuclear region of cytoplasm
GO:0048511 P rhythmic process
3009 O_BomoOtmSK12709_complete:A_BomoOtmSK_comp14415_c0_seq1
159bp
3010 O_BomoOtmSK1270_internal:A_BomoOtmSK_comp4822_c0_seq1
156bp
 mitogen-activated_protein_kinase_kinase_kinase_4_[Bombyx_mori]
3011 O_BomoOtmSK12710_complete:A_BomoOtmSK_comp14415_c0_seq1
112bp
3012 O_BomoOtmSK12711_complete:A_BomoOtmSK_comp14415_c0_seq2
550bp
 timeless_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003053 P circadian regulation of heart rate
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006606 P protein import into nucleus
GO:0007617 P mating behavior
GO:0007620 P copulation
GO:0007622 P rhythmic behavior
GO:0007623 P circadian rhythm
GO:0008062 P eclosion rhythm
GO:0008134 F transcription factor binding
GO:0009648 P photoperiodism
GO:0009649 P entrainment of circadian clock
GO:0030431 P sleep
GO:0042306 P regulation of protein import into nucleus
GO:0042749 P regulation of circadian sleep/wake cycle
GO:0043234 C protein-containing complex
GO:0045187 P regulation of circadian sleep/wake cycle, sleep
GO:0045475 P locomotor rhythm
GO:0046957 P negative phototaxis
GO:0046982 F protein heterodimerization activity
GO:0048471 C perinuclear region of cytoplasm
GO:0048511 P rhythmic process
GO:0048512 P circadian behavior
GO:0050764 P regulation of phagocytosis
GO:0050766 P positive regulation of phagocytosis
GO:0060086 P circadian temperature homeostasis
GO:0071482 P cellular response to light stimulus
GO:2000678 P negative regulation of transcription regulatory region DNA binding
3013 O_BomoOtmSK12712_complete:A_BomoOtmSK_comp14415_c0_seq2
159bp
3014 O_BomoOtmSK12713_complete:A_BomoOtmSK_comp14415_c0_seq2
112bp
3015 O_BomoOtmSK12714_internal:A_BomoOtmSK_comp14416_c0_seq1
129bp
3016 O_BomoOtmSK12715_5prime_partial:A_BomoOtmSK_comp14416_c0_seq1
115bp
3017 O_BomoOtmSK12716_internal:A_BomoOtmSK_comp14416_c0_seq3
151bp
3018 O_BomoOtmSK12717_5prime_partial:A_BomoOtmSK_comp14416_c0_seq3
126bp
3019 O_BomoOtmSK12718_5prime_partial:A_BomoOtmSK_comp14416_c0_seq3
120bp
 LOW_QUALITY_PROTEIN:_serine_palmitoyltransferase_2_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004758 F serine C-palmitoyltransferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006665 P sphingolipid metabolic process
GO:0008152 P metabolic process
GO:0009058 P biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0030170 F pyridoxal phosphate binding
3020 O_BomoOtmSK12719_3prime_partial:A_BomoOtmSK_comp14416_c0_seq4
135bp
3021 O_BomoOtmSK1271_5prime_partial:A_BomoOtmSK_comp4822_c0_seq1
106bp
3022 O_BomoOtmSK12720_5prime_partial:A_BomoOtmSK_comp14416_c0_seq4
133bp
3023 O_BomoOtmSK12721_5prime_partial:A_BomoOtmSK_comp14416_c0_seq4
120bp
 LOW_QUALITY_PROTEIN:_serine_palmitoyltransferase_2_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004758 F serine C-palmitoyltransferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006665 P sphingolipid metabolic process
GO:0008152 P metabolic process
GO:0009058 P biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0030170 F pyridoxal phosphate binding
3024 O_BomoOtmSK12722_5prime_partial:A_BomoOtmSK_comp14416_c0_seq5
116bp
3025 O_BomoOtmSK12723_3prime_partial:A_BomoOtmSK_comp14416_c0_seq5
113bp
3026 O_BomoOtmSK12724_complete:A_BomoOtmSK_comp14417_c0_seq1
1255bp
 uncharacterized_protein_LOC101740429_[Bombyx_mori]
3027 O_BomoOtmSK12725_complete:A_BomoOtmSK_comp14417_c0_seq1
272bp
 uncharacterized_protein_LOC101740429_[Bombyx_mori]
3028 O_BomoOtmSK12726_complete:A_BomoOtmSK_comp14417_c0_seq1
110bp
3029 O_BomoOtmSK12727_complete:A_BomoOtmSK_comp14417_c0_seq2
1519bp
 uncharacterized_protein_LOC101740429_[Bombyx_mori]
3030 O_BomoOtmSK12728_complete:A_BomoOtmSK_comp14417_c0_seq2
110bp
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