SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/35878
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2821 O_BomoOtmSK1253_3prime_partial:A_BomoOtmSK_comp4792_c0_seq1
215bp
 tetratricopeptide_repeat_protein_39B_isoform_X2_[Bombyx_mori]
2822 O_BomoOtmSK12540_complete:A_BomoOtmSK_comp14352_c0_seq2
101bp
 hypothetical_protein_N301_05580,_partial_[Charadrius_vociferus]
2823 O_BomoOtmSK12541_3prime_partial:A_BomoOtmSK_comp14353_c0_seq1
369bp
 large_neutral_amino_acids_transporter_small_subunit_1_[Bombyx_mori]
GO:0003333 P amino acid transmembrane transport
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0015171 F amino acid transmembrane transporter activity
GO:0015179 F L-amino acid transmembrane transporter activity
GO:0015297 F antiporter activity
GO:0015807 P L-amino acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:1902475 P L-alpha-amino acid transmembrane transport
2824 O_BomoOtmSK12542_3prime_partial:A_BomoOtmSK_comp14353_c0_seq2
383bp
 large_neutral_amino_acids_transporter_small_subunit_1_[Bombyx_mori]
GO:0003333 P amino acid transmembrane transport
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0015171 F amino acid transmembrane transporter activity
GO:0015179 F L-amino acid transmembrane transporter activity
GO:0015297 F antiporter activity
GO:0015807 P L-amino acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:1902475 P L-alpha-amino acid transmembrane transport
2825 O_BomoOtmSK12543_5prime_partial:A_BomoOtmSK_comp14353_c0_seq2
102bp
 CLUMA_CG020168,_isoform_A_[Clunio_marinus]
2826 O_BomoOtmSK12544_5prime_partial:A_BomoOtmSK_comp14353_c0_seq3
137bp
 large_neutral_amino_acids_transporter_small_subunit_1_[Bombyx_mori]
GO:0003333 P amino acid transmembrane transport
GO:0005791 C rough endoplasmic reticulum
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0006979 P response to oxidative stress
GO:0007420 P brain development
GO:0009636 P response to toxic substance
GO:0009986 C cell surface
GO:0015171 F amino acid transmembrane transporter activity
GO:0015327 F cystine:glutamate antiporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035094 P response to nicotine
GO:0043231 C intracellular membrane-bounded organelle
GO:0070306 P lens fiber cell differentiation
GO:0070527 P platelet aggregation
GO:0089711 P L-glutamate transmembrane transport
2827 O_BomoOtmSK12545_5prime_partial:A_BomoOtmSK_comp14357_c0_seq1
250bp
 uncharacterized_protein_LOC101737333_isoform_X4_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0007158 P neuron cell-cell adhesion
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007413 P axonal fasciculation
GO:0007420 P brain development
GO:0016020 C membrane
GO:0030424 C axon
GO:0031175 P neuron projection development
GO:0031225 C anchored component of membrane
GO:0045665 P negative regulation of neuron differentiation
GO:0048167 P regulation of synaptic plasticity
2828 O_BomoOtmSK12546_5prime_partial:A_BomoOtmSK_comp14357_c0_seq2
240bp
 uncharacterized_protein_LOC101737333_isoform_X6_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0007158 P neuron cell-cell adhesion
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007413 P axonal fasciculation
GO:0007420 P brain development
GO:0016020 C membrane
GO:0030424 C axon
GO:0031175 P neuron projection development
GO:0031225 C anchored component of membrane
GO:0045665 P negative regulation of neuron differentiation
GO:0048167 P regulation of synaptic plasticity
2829 O_BomoOtmSK12547_complete:A_BomoOtmSK_comp14357_c0_seq2
115bp
2830 O_BomoOtmSK12548_5prime_partial:A_BomoOtmSK_comp14357_c0_seq3
240bp
 uncharacterized_protein_LOC101737333_isoform_X6_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0007158 P neuron cell-cell adhesion
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007413 P axonal fasciculation
GO:0007420 P brain development
GO:0016020 C membrane
GO:0030424 C axon
GO:0031175 P neuron projection development
GO:0031225 C anchored component of membrane
GO:0045665 P negative regulation of neuron differentiation
GO:0048167 P regulation of synaptic plasticity
2831 O_BomoOtmSK12549_complete:A_BomoOtmSK_comp14357_c0_seq3
115bp
2832 O_BomoOtmSK1254_5prime_partial:A_BomoOtmSK_comp4792_c0_seq2
416bp
 tetratricopeptide_repeat_protein_39B_isoform_X2_[Bombyx_mori]
2833 O_BomoOtmSK12550_5prime_partial:A_BomoOtmSK_comp14357_c0_seq4
294bp
 uncharacterized_protein_LOC101737333_isoform_X4_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0007158 P neuron cell-cell adhesion
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007413 P axonal fasciculation
GO:0007420 P brain development
GO:0016020 C membrane
GO:0030424 C axon
GO:0031175 P neuron projection development
GO:0031225 C anchored component of membrane
GO:0045665 P negative regulation of neuron differentiation
GO:0048167 P regulation of synaptic plasticity
2834 O_BomoOtmSK12551_complete:A_BomoOtmSK_comp14359_c0_seq1
374bp
 UDP-galactose_4-epimerase_isoform_X1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0003978 F UDP-glucose 4-epimerase activity
GO:0005975 P carbohydrate metabolic process
GO:0006012 P galactose metabolic process
GO:0009243 P O antigen biosynthetic process
GO:0016853 F isomerase activity
GO:0050662 F obsolete coenzyme binding
2835 O_BomoOtmSK12552_complete:A_BomoOtmSK_comp14360_c1_seq1
1180bp
 myelin_regulatory_factor_isoform_X3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0014003 P oligodendrocyte development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0022010 P central nervous system myelination
GO:0030154 P cell differentiation
GO:0031643 P positive regulation of myelination
GO:0032286 P central nervous system myelin maintenance
GO:0043565 F sequence-specific DNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0048709 P oligodendrocyte differentiation
2836 O_BomoOtmSK12553_complete:A_BomoOtmSK_comp14360_c1_seq1
328bp
2837 O_BomoOtmSK12554_complete:A_BomoOtmSK_comp14360_c1_seq1
166bp
2838 O_BomoOtmSK12555_complete:A_BomoOtmSK_comp14360_c1_seq1
155bp
2839 O_BomoOtmSK12556_complete:A_BomoOtmSK_comp14361_c0_seq1
756bp
 nuclear_hormone_receptor_FTZ-F1_beta_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003707 F steroid hormone receptor activity
GO:0003712 F transcription coregulator activity
GO:0004879 F nuclear receptor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0009755 P hormone-mediated signaling pathway
GO:0009888 P tissue development
GO:0010906 P regulation of glucose metabolic process
GO:0016321 P female meiosis chromosome segregation
GO:0030522 P intracellular receptor signaling pathway
GO:0035211 P spermathecum morphogenesis
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0045433 P male courtship behavior, veined wing generated song production
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0060968 P obsolete regulation of gene silencing
GO:0090575 C RNA polymerase II transcription regulator complex
2840 O_BomoOtmSK12557_complete:A_BomoOtmSK_comp14361_c0_seq1
132bp
2841 O_BomoOtmSK12558_complete:A_BomoOtmSK_comp14361_c0_seq2
756bp
 nuclear_hormone_receptor_FTZ-F1_beta_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003707 F steroid hormone receptor activity
GO:0003712 F transcription coregulator activity
GO:0004879 F nuclear receptor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0009755 P hormone-mediated signaling pathway
GO:0009888 P tissue development
GO:0010906 P regulation of glucose metabolic process
GO:0016321 P female meiosis chromosome segregation
GO:0030522 P intracellular receptor signaling pathway
GO:0035211 P spermathecum morphogenesis
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0045433 P male courtship behavior, veined wing generated song production
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0060968 P obsolete regulation of gene silencing
GO:0090575 C RNA polymerase II transcription regulator complex
2842 O_BomoOtmSK12559_complete:A_BomoOtmSK_comp14361_c0_seq2
132bp
2843 O_BomoOtmSK1255_complete:A_BomoOtmSK_comp4793_c0_seq1
385bp
 SET_and_MYND_domain-containing_protein_5_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0046872 F metal ion binding
2844 O_BomoOtmSK12560_5prime_partial:A_BomoOtmSK_comp14361_c1_seq1
468bp
 E3_ubiquitin-protein_ligase_ZNF598_isoform_X1_[Bombyx_mori]
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
2845 O_BomoOtmSK12561_3prime_partial:A_BomoOtmSK_comp14362_c0_seq1
333bp
 probable_tRNA_N6-adenosine_threonylcarbamoyltransferase_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008033 P tRNA processing
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0046872 F metal ion binding
GO:0061711 F N(6)-L-threonylcarbamoyladenine synthase activity
2846 O_BomoOtmSK12562_complete:A_BomoOtmSK_comp14363_c0_seq1
221bp
 grpE_protein_homolog,_mitochondrial_[Bombyx_mori]
GO:0000774 F adenyl-nucleotide exchange factor activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006457 P protein folding
GO:0006626 P protein targeting to mitochondrion
GO:0022008 P neurogenesis
GO:0042803 F protein homodimerization activity
GO:0050790 P regulation of catalytic activity
GO:0051082 F unfolded protein binding
GO:0051087 F chaperone binding
2847 O_BomoOtmSK12563_complete:A_BomoOtmSK_comp14363_c0_seq2
221bp
 grpE_protein_homolog,_mitochondrial_[Bombyx_mori]
GO:0000774 F adenyl-nucleotide exchange factor activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006457 P protein folding
GO:0006626 P protein targeting to mitochondrion
GO:0022008 P neurogenesis
GO:0042803 F protein homodimerization activity
GO:0050790 P regulation of catalytic activity
GO:0051082 F unfolded protein binding
GO:0051087 F chaperone binding
2848 O_BomoOtmSK12564_complete:A_BomoOtmSK_comp14364_c0_seq1
221bp
 lysophospholipase_[Bombyx_mori]
GO:0002084 P protein depalmitoylation
GO:0005737 C cytoplasm
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008474 F palmitoyl-(protein) hydrolase activity
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
2849 O_BomoOtmSK12565_complete:A_BomoOtmSK_comp14365_c1_seq1
188bp
 ADP-ribosylation_factor-like_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000819 P sister chromatid segregation
GO:0001666 P response to hypoxia
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007067 P mitotic cell cycle
GO:0007264 P small GTPase mediated signal transduction
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019003 F GDP binding
GO:0030496 C midbody
GO:0032419 C extrinsic component of lysosome membrane
GO:0043014 F alpha-tubulin binding
GO:0048487 F beta-tubulin binding
GO:0051233 C spindle midzone
GO:0051301 P cell division
2850 O_BomoOtmSK12566_5prime_partial:A_BomoOtmSK_comp14366_c0_seq1
319bp
 tyrosine-protein_kinase_Src42A-like_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004715 F non-membrane spanning protein tyrosine kinase activity
GO:0005102 F signaling receptor binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005912 C adherens junction
GO:0006099 P tricarboxylic acid cycle
GO:0006468 P protein phosphorylation
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007254 P JNK cascade
GO:0007275 P multicellular organism development
GO:0007391 P dorsal closure
GO:0007395 P dorsal closure, spreading of leading edge cells
GO:0007411 P axon guidance
GO:0007424 P open tracheal system development
GO:0007435 P salivary gland morphogenesis
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016477 P cell migration
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0019233 P sensory perception of pain
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0034332 P adherens junction organization
GO:0036335 P intestinal stem cell homeostasis
GO:0038083 P peptidyl-tyrosine autophosphorylation
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:0042127 P regulation of cell population proliferation
GO:0042742 P defense response to bacterium
GO:0043277 P apoptotic cell clearance
GO:0045087 P innate immune response
GO:0045886 P negative regulation of synaptic assembly at neuromuscular junction
GO:0046529 P imaginal disc fusion, thorax closure
GO:0048749 P compound eye development
GO:0051017 P actin filament bundle assembly
GO:0090136 P epithelial cell-cell adhesion
previous next from show/35878

- SilkBase 1999-2023 -