SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/35878
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2431 O_BomoOtmSK12189_internal:A_BomoOtmSK_comp14234_c0_seq2
220bp
2432 O_BomoOtmSK1218_internal:A_BomoOtmSK_comp4763_c0_seq2
144bp
 nuclear_pore_complex_protein_Nup133_[Bombyx_mori]
2433 O_BomoOtmSK12190_internal:A_BomoOtmSK_comp14234_c0_seq2
220bp
2434 O_BomoOtmSK12191_internal:A_BomoOtmSK_comp14234_c0_seq2
220bp
 cullin-2_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0016567 P protein ubiquitination
GO:0030163 P protein catabolic process
GO:0030891 C VCB complex
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031462 C Cul2-RING ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0032403 F protein-containing complex binding
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
2435 O_BomoOtmSK12192_complete:A_BomoOtmSK_comp14235_c0_seq2
1015bp
 uncharacterized_protein_LOC101738218_[Bombyx_mori]
2436 O_BomoOtmSK12193_internal:A_BomoOtmSK_comp14237_c0_seq1
146bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Papilio_machaon]
GO:0003723 F RNA binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
2437 O_BomoOtmSK12194_complete:A_BomoOtmSK_comp14241_c0_seq1
1775bp
 tyrosine-protein_phosphatase_non-receptor_type_23_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0006470 P protein dephosphorylation
GO:0006810 P transport
GO:0010633 P negative regulation of epithelial cell migration
GO:0015031 P protein transport
GO:0016023 C cytoplasmic vesicle
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0019901 F protein kinase binding
GO:0030030 P cell projection organization
GO:0030334 P regulation of cell migration
GO:0031410 C cytoplasmic vesicle
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0036064 C ciliary basal body
GO:0042995 C cell projection
GO:0043162 P ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0060271 P cilium assembly
GO:0070062 C extracellular exosome
GO:1903387 P positive regulation of homophilic cell adhesion
GO:1903393 P positive regulation of adherens junction organization
GO:2000643 P positive regulation of early endosome to late endosome transport
2438 O_BomoOtmSK12195_complete:A_BomoOtmSK_comp14241_c0_seq1
137bp
2439 O_BomoOtmSK12196_complete:A_BomoOtmSK_comp14241_c0_seq1
115bp
2440 O_BomoOtmSK12197_complete:A_BomoOtmSK_comp14242_c0_seq1
511bp
 WW_domain-containing_adapter_protein_with_coiled-coil_homolog_isoform_X1_[Bombyx_mori]
GO:0000993 F RNA polymerase II complex binding
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0010390 P histone monoubiquitination
GO:0016568 P chromatin organization
GO:0044783 P mitotic G1 DNA damage checkpoint signaling
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0071894 P histone H2B conserved C-terminal lysine ubiquitination
2441 O_BomoOtmSK12198_complete:A_BomoOtmSK_comp14242_c0_seq1
144bp
2442 O_BomoOtmSK12199_complete:A_BomoOtmSK_comp14242_c0_seq1
134bp
2443 O_BomoOtmSK1219_5prime_partial:A_BomoOtmSK_comp4765_c0_seq1
131bp
 cuticular_protein_glycine-rich_24_precursor_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0030904 C retromer complex
GO:0034314 P Arp2/3 complex-mediated actin nucleation
GO:0042147 P retrograde transport, endosome to Golgi
GO:0042752 P regulation of circadian rhythm
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0048511 P rhythmic process
GO:0051127 P positive regulation of actin nucleation
GO:0070534 P protein K63-linked ubiquitination
2444 O_BomoOtmSK121_internal:A_BomoOtmSK_comp466_c1_seq1
108bp
 uncharacterized_protein_LOC110384324_[Helicoverpa_armigera]
2445 O_BomoOtmSK12200_complete:A_BomoOtmSK_comp14242_c0_seq2
485bp
 WW_domain-containing_adapter_protein_with_coiled-coil_homolog_isoform_X2_[Bombyx_mori]
GO:0000993 F RNA polymerase II complex binding
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0010390 P histone monoubiquitination
GO:0016568 P chromatin organization
GO:0044783 P mitotic G1 DNA damage checkpoint signaling
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0071894 P histone H2B conserved C-terminal lysine ubiquitination
2446 O_BomoOtmSK12201_complete:A_BomoOtmSK_comp14242_c0_seq2
134bp
2447 O_BomoOtmSK12202_complete:A_BomoOtmSK_comp14242_c0_seq2
118bp
2448 O_BomoOtmSK12203_complete:A_BomoOtmSK_comp14243_c0_seq1
1280bp
 target_of_rapamycin_isoform_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001558 P regulation of cell growth
GO:0001934 P positive regulation of protein phosphorylation
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007411 P axon guidance
GO:0007430 P terminal branching, open tracheal system
GO:0007520 P myoblast fusion
GO:0007525 P somatic muscle development
GO:0007584 P response to nutrient
GO:0008144 F obsolete drug binding
GO:0008340 P determination of adult lifespan
GO:0008406 P gonad development
GO:0009594 P detection of nutrient
GO:0016242 P negative regulation of macroautophagy
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0030307 P positive regulation of cell growth
GO:0031931 C TORC1 complex
GO:0031932 C TORC2 complex
GO:0032456 P endocytic recycling
GO:0035264 P multicellular organism growth
GO:0040007 P growth
GO:0040018 P positive regulation of multicellular organism growth
GO:0042331 P phototaxis
GO:0043621 F protein self-association
GO:0045176 P apical protein localization
GO:0045793 P positive regulation of cell size
GO:0046622 P positive regulation of organ growth
GO:0048142 P germarium-derived cystoblast division
GO:0048813 P dendrite morphogenesis
GO:0051124 P synaptic assembly at neuromuscular junction
GO:0090070 P positive regulation of ribosome biogenesis
GO:2000331 P regulation of terminal button organization
GO:2000377 P regulation of reactive oxygen species metabolic process
GO:2001023 P regulation of response to drug
2449 O_BomoOtmSK12204_complete:A_BomoOtmSK_comp14243_c0_seq1
116bp
2450 O_BomoOtmSK12205_5prime_partial:A_BomoOtmSK_comp14243_c0_seq2
1073bp
 target_of_rapamycin_isoform_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001558 P regulation of cell growth
GO:0001934 P positive regulation of protein phosphorylation
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007411 P axon guidance
GO:0007430 P terminal branching, open tracheal system
GO:0007520 P myoblast fusion
GO:0007525 P somatic muscle development
GO:0007584 P response to nutrient
GO:0008144 F obsolete drug binding
GO:0008340 P determination of adult lifespan
GO:0008406 P gonad development
GO:0009594 P detection of nutrient
GO:0016242 P negative regulation of macroautophagy
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0030307 P positive regulation of cell growth
GO:0031931 C TORC1 complex
GO:0031932 C TORC2 complex
GO:0032456 P endocytic recycling
GO:0035264 P multicellular organism growth
GO:0040007 P growth
GO:0040018 P positive regulation of multicellular organism growth
GO:0042331 P phototaxis
GO:0043621 F protein self-association
GO:0045176 P apical protein localization
GO:0045793 P positive regulation of cell size
GO:0046622 P positive regulation of organ growth
GO:0048142 P germarium-derived cystoblast division
GO:0048813 P dendrite morphogenesis
GO:0051124 P synaptic assembly at neuromuscular junction
GO:0090070 P positive regulation of ribosome biogenesis
GO:2000331 P regulation of terminal button organization
GO:2000377 P regulation of reactive oxygen species metabolic process
GO:2001023 P regulation of response to drug
2451 O_BomoOtmSK12206_5prime_partial:A_BomoOtmSK_comp14243_c0_seq2
119bp
 unnamed_protein_product_[Ostreococcus_tauri]
2452 O_BomoOtmSK12207_complete:A_BomoOtmSK_comp14243_c0_seq2
119bp
2453 O_BomoOtmSK12208_3prime_partial:A_BomoOtmSK_comp14244_c1_seq1
170bp
 PREDICTED:_cyclin-T-like,_partial_[Amyelois_transitella]
GO:0000278 P mitotic cell cycle
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0007015 P actin filament organization
GO:0007419 P ventral cord development
GO:0008023 C transcription elongation factor complex
GO:0008024 C cyclin/CDK positive transcription elongation factor complex
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0008360 P regulation of cell shape
GO:0009408 P response to heat
GO:0016538 F cyclin-dependent protein serine/threonine kinase regulator activity
GO:0019901 F protein kinase binding
GO:0032783 C super elongation complex
GO:0045737 P positive regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:1901409 P positive regulation of phosphorylation of RNA polymerase II C-terminal domain
2454 O_BomoOtmSK12209_complete:A_BomoOtmSK_comp14244_c1_seq2
805bp
 cyclin-T_[Bombyx_mori]
GO:0000278 P mitotic cell cycle
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0007015 P actin filament organization
GO:0007419 P ventral cord development
GO:0008023 C transcription elongation factor complex
GO:0008024 C cyclin/CDK positive transcription elongation factor complex
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0008360 P regulation of cell shape
GO:0009408 P response to heat
GO:0016538 F cyclin-dependent protein serine/threonine kinase regulator activity
GO:0019901 F protein kinase binding
GO:0032783 C super elongation complex
GO:0045737 P positive regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:1901409 P positive regulation of phosphorylation of RNA polymerase II C-terminal domain
2455 O_BomoOtmSK1220_3prime_partial:A_BomoOtmSK_comp4765_c0_seq1
130bp
2456 O_BomoOtmSK12210_complete:A_BomoOtmSK_comp14244_c1_seq2
203bp
2457 O_BomoOtmSK12211_complete:A_BomoOtmSK_comp14244_c1_seq2
110bp
2458 O_BomoOtmSK12212_internal:A_BomoOtmSK_comp14245_c0_seq2
196bp
 tyrosine-protein_phosphatase_non-receptor_type_9_isoform_X2_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006470 P protein dephosphorylation
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
2459 O_BomoOtmSK12213_5prime_partial:A_BomoOtmSK_comp14245_c0_seq2
102bp
2460 O_BomoOtmSK12214_3prime_partial:A_BomoOtmSK_comp14247_c0_seq1
197bp
 60_kDa_SS-A/Ro_ribonucleoprotein_[Bombyx_mori]
GO:0002520 P immune system development
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006383 P transcription by RNA polymerase III
GO:0007224 P smoothened signaling pathway
GO:0009411 P response to UV
GO:0030030 P cell projection organization
GO:0030529 C ribonucleoprotein complex
GO:0030620 F U2 snRNA binding
GO:0046872 F metal ion binding
GO:0060271 P cilium assembly
previous next from show/35878

- SilkBase 1999-2023 -