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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2401 O_BomoOtmSK12161_5prime_partial:A_BomoOtmSK_comp14222_c0_seq1
107bp
2402 O_BomoOtmSK12162_5prime_partial:A_BomoOtmSK_comp14223_c0_seq1
320bp
 uncharacterized_protein_LOC101737966_isoform_X2_[Bombyx_mori]
2403 O_BomoOtmSK12163_5prime_partial:A_BomoOtmSK_comp14223_c0_seq1
106bp
2404 O_BomoOtmSK12164_complete:A_BomoOtmSK_comp14223_c0_seq2
333bp
 uncharacterized_protein_LOC101737966_isoform_X1_[Bombyx_mori]
2405 O_BomoOtmSK12165_5prime_partial:A_BomoOtmSK_comp14223_c0_seq3
366bp
 uncharacterized_protein_LOC101737966_isoform_X1_[Bombyx_mori]
2406 O_BomoOtmSK12166_complete:A_BomoOtmSK_comp14223_c0_seq4
371bp
 uncharacterized_protein_LOC101737966_isoform_X2_[Bombyx_mori]
2407 O_BomoOtmSK12167_complete:A_BomoOtmSK_comp14223_c0_seq5
287bp
 uncharacterized_protein_LOC101737966_isoform_X2_[Bombyx_mori]
2408 O_BomoOtmSK12168_5prime_partial:A_BomoOtmSK_comp14223_c0_seq5
106bp
2409 O_BomoOtmSK12169_5prime_partial:A_BomoOtmSK_comp14223_c0_seq6
404bp
 uncharacterized_protein_LOC101737966_isoform_X2_[Bombyx_mori]
2410 O_BomoOtmSK1216_5prime_partial:A_BomoOtmSK_comp4762_c0_seq1
122bp
 uncharacterized_protein_LOC101743107_[Bombyx_mori]
GO:0006144 P purine nucleobase metabolic process
GO:0016787 F hydrolase activity
GO:0033971 F hydroxyisourate hydrolase activity
GO:0042597 C periplasmic space
2411 O_BomoOtmSK12170_5prime_partial:A_BomoOtmSK_comp14224_c0_seq1
904bp
 replication_factor_C_subunit_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003689 F DNA clamp loader activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005663 C DNA replication factor C complex
GO:0005875 C microtubule associated complex
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0019233 P sensory perception of pain
GO:0022008 P neurogenesis
GO:0046331 P lateral inhibition
GO:0048813 P dendrite morphogenesis
2412 O_BomoOtmSK12171_complete:A_BomoOtmSK_comp14224_c0_seq1
135bp
2413 O_BomoOtmSK12172_complete:A_BomoOtmSK_comp14229_c0_seq1
193bp
 uncharacterized_protein_LOC101745170_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0016032 P viral process
GO:0044822 F RNA binding
GO:0046778 P modification by virus of host mRNA processing
GO:0046872 F metal ion binding
2414 O_BomoOtmSK12173_5prime_partial:A_BomoOtmSK_comp14229_c0_seq1
113bp
2415 O_BomoOtmSK12174_complete:A_BomoOtmSK_comp14229_c0_seq2
118bp
 uncharacterized_protein_LOC101745170_[Bombyx_mori]
2416 O_BomoOtmSK12175_5prime_partial:A_BomoOtmSK_comp14229_c0_seq2
113bp
2417 O_BomoOtmSK12176_complete:A_BomoOtmSK_comp14229_c0_seq3
102bp
 uncharacterized_protein_LOC101745170_[Bombyx_mori]
2418 O_BomoOtmSK12177_complete:A_BomoOtmSK_comp14229_c0_seq6
177bp
 uncharacterized_protein_LOC101745170_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0016032 P viral process
GO:0044822 F RNA binding
GO:0046778 P modification by virus of host mRNA processing
GO:0046872 F metal ion binding
2419 O_BomoOtmSK12178_complete:A_BomoOtmSK_comp14230_c0_seq1
432bp
 DDB1-_and_CUL4-associated_factor_10_homolog_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
2420 O_BomoOtmSK12179_complete:A_BomoOtmSK_comp14230_c0_seq2
467bp
 DDB1-_and_CUL4-associated_factor_10_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
2421 O_BomoOtmSK1217_5prime_partial:A_BomoOtmSK_comp4763_c0_seq1
121bp
 nuclear_pore_complex_protein_Nup133_[Bombyx_mori]
2422 O_BomoOtmSK12180_complete:A_BomoOtmSK_comp14231_c0_seq1
250bp
 transcription_factor_A,_mitochondrial_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001223 F transcription coactivator binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006261 P DNA-dependent DNA replication
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006356 P regulation of transcription by RNA polymerase I
GO:0006366 P transcription by RNA polymerase II
GO:0006390 P mitochondrial transcription
GO:0006391 P transcription initiation from mitochondrial promoter
GO:0007005 P mitochondrion organization
GO:0008301 F DNA binding, bending
GO:0031072 F heat shock protein binding
GO:0033108 P mitochondrial respiratory chain complex assembly
GO:0042645 C mitochondrial nucleoid
GO:0044822 F RNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0070363 F mitochondrial promoter sequence-specific DNA binding
2423 O_BomoOtmSK12181_5prime_partial:A_BomoOtmSK_comp14232_c0_seq2
138bp
 DNA_repair_protein_XRCC1_isoform_X4_[Bombyx_mori]
2424 O_BomoOtmSK12182_3prime_partial:A_BomoOtmSK_comp14232_c0_seq2
129bp
2425 O_BomoOtmSK12183_5prime_partial:A_BomoOtmSK_comp14232_c0_seq3
106bp
 DNA_repair_protein_XRCC1_isoform_X4_[Bombyx_mori]
2426 O_BomoOtmSK12184_internal:A_BomoOtmSK_comp14232_c0_seq4
108bp
2427 O_BomoOtmSK12185_5prime_partial:A_BomoOtmSK_comp14232_c0_seq4
102bp
 DNA_repair_protein_XRCC1_isoform_X3_[Bombyx_mori]
2428 O_BomoOtmSK12186_complete:A_BomoOtmSK_comp14233_c0_seq1
304bp
 antennapedia_homologue_protein_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007384 P specification of segmental identity, thorax
GO:0009948 P anterior/posterior axis specification
GO:0043565 F sequence-specific DNA binding
2429 O_BomoOtmSK12187_complete:A_BomoOtmSK_comp14233_c0_seq3
304bp
 antennapedia_homologue_protein_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007384 P specification of segmental identity, thorax
GO:0009948 P anterior/posterior axis specification
GO:0043565 F sequence-specific DNA binding
2430 O_BomoOtmSK12188_3prime_partial:A_BomoOtmSK_comp14234_c0_seq1
105bp
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