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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2251 O_BomoOtmSK12026_complete:A_BomoOtmSK_comp14168_c0_seq2
333bp
 arrestin_domain-containing_protein_17_[Bombyx_mori]
2252 O_BomoOtmSK12027_complete:A_BomoOtmSK_comp14168_c0_seq2
109bp
2253 O_BomoOtmSK12028_complete:A_BomoOtmSK_comp14168_c0_seq2
107bp
2254 O_BomoOtmSK12029_complete:A_BomoOtmSK_comp14169_c0_seq1
240bp
 eukaryotic_initiation_factor_4E-2_[Bombyx_mori]
GO:0001701 P in utero embryonic development
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0005737 C cytoplasm
GO:0005845 C mRNA cap binding complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006417 P regulation of translation
GO:0017148 P negative regulation of translation
GO:0031625 F ubiquitin protein ligase binding
GO:0044822 F RNA binding
2255 O_BomoOtmSK1202_5prime_partial:A_BomoOtmSK_comp4751_c0_seq2
1001bp
 intraflagellar_transport_protein_140_homolog_[Bombyx_mori]
GO:0001750 C photoreceptor outer segment
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0005930 C axoneme
GO:0007368 P determination of left/right symmetry
GO:0007507 P heart development
GO:0008589 P regulation of smoothened signaling pathway
GO:0021532 P neural tube patterning
GO:0030030 P cell projection organization
GO:0030991 C intraciliary transport particle A
GO:0031513 C non-motile cilium
GO:0032391 C photoreceptor connecting cilium
GO:0035108 P limb morphogenesis
GO:0035721 P intraciliary retrograde transport
GO:0035845 P photoreceptor cell outer segment organization
GO:0036064 C ciliary basal body
GO:0042073 P intraciliary transport
GO:0042384 P cilium assembly
GO:0042995 C cell projection
GO:0048705 P skeletal system morphogenesis
GO:0060041 P retina development in camera-type eye
GO:0060271 P cilium assembly
GO:0061512 P protein localization to cilium
GO:0072001 P renal system development
GO:0072372 C cilium
GO:0097542 C ciliary tip
GO:1902017 P regulation of cilium assembly
2256 O_BomoOtmSK12030_complete:A_BomoOtmSK_comp14169_c0_seq1
220bp
2257 O_BomoOtmSK12031_complete:A_BomoOtmSK_comp14169_c0_seq1
125bp
2258 O_BomoOtmSK12032_3prime_partial:A_BomoOtmSK_comp14170_c0_seq1
244bp
 thioredoxin_domain-containing_protein_2_isoform_X2_[Bombyx_mori]
2259 O_BomoOtmSK12033_5prime_partial:A_BomoOtmSK_comp14170_c0_seq1
127bp
2260 O_BomoOtmSK12034_internal:A_BomoOtmSK_comp14170_c0_seq2
256bp
 thioredoxin_domain-containing_protein_2_isoform_X1_[Bombyx_mori]
2261 O_BomoOtmSK12035_5prime_partial:A_BomoOtmSK_comp14170_c0_seq2
127bp
2262 O_BomoOtmSK12036_5prime_partial:A_BomoOtmSK_comp14170_c0_seq3
149bp
 thioredoxin_domain-containing_protein_2_isoform_X2_[Bombyx_mori]
2263 O_BomoOtmSK12037_3prime_partial:A_BomoOtmSK_comp14170_c0_seq3
129bp
2264 O_BomoOtmSK12038_internal:A_BomoOtmSK_comp14170_c0_seq4
262bp
 thioredoxin_domain-containing_protein_2_isoform_X1_[Bombyx_mori]
2265 O_BomoOtmSK12039_5prime_partial:A_BomoOtmSK_comp14170_c0_seq4
133bp
 hypothetical_protein_TRFO_30563_[Tritrichomonas_foetus]
2266 O_BomoOtmSK1203_complete:A_BomoOtmSK_comp4752_c0_seq1
303bp
 cyclin-dependent_kinase_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002088 P lens development in camera-type eye
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004693 F cyclin-dependent protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006281 P DNA repair
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0009636 P response to toxic substance
GO:0015030 C Cajal body
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030332 F cyclin binding
GO:0031100 P animal organ regeneration
GO:0032355 P response to estradiol
GO:0032403 F protein-containing complex binding
GO:0032869 P cellular response to insulin stimulus
GO:0042493 P response to xenobiotic stimulus
GO:0043231 C intracellular membrane-bounded organelle
GO:0045471 P response to ethanol
GO:0046686 P response to cadmium ion
GO:0046872 F metal ion binding
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0051591 P response to cAMP
GO:0051602 P response to electrical stimulus
GO:0051726 P regulation of cell cycle
2267 O_BomoOtmSK12040_3prime_partial:A_BomoOtmSK_comp14170_c0_seq5
250bp
 thioredoxin_domain-containing_protein_2_isoform_X2_[Bombyx_mori]
2268 O_BomoOtmSK12041_5prime_partial:A_BomoOtmSK_comp14170_c0_seq5
133bp
 hypothetical_protein_TRFO_30563_[Tritrichomonas_foetus]
2269 O_BomoOtmSK12042_complete:A_BomoOtmSK_comp14171_c0_seq1
110bp
 ubiquitin-related_modifier_1_homolog_[Bombyx_mori]
GO:0002098 P tRNA wobble uridine modification
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008033 P tRNA processing
GO:0032447 P protein urmylation
GO:0034227 P tRNA thio-modification
2270 O_BomoOtmSK12043_5prime_partial:A_BomoOtmSK_comp14175_c0_seq2
487bp
 ankyrin-3_isoform_X1_[Bombyx_mori]
GO:0002027 P regulation of heart rate
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006874 P cellular calcium ion homeostasis
GO:0007165 P signal transduction
GO:0008093 F cytoskeletal anchor activity
GO:0008104 P protein localization
GO:0010628 P positive regulation of gene expression
GO:0010881 P regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion
GO:0010882 P regulation of cardiac muscle contraction by calcium ion signaling
GO:0014704 C intercalated disc
GO:0015459 F potassium channel regulator activity
GO:0016020 C membrane
GO:0016324 C apical plasma membrane
GO:0030018 C Z disc
GO:0030054 C cell junction
GO:0030315 C T-tubule
GO:0030507 F spectrin binding
GO:0030674 F protein-macromolecule adaptor activity
GO:0031430 C M band
GO:0031647 P regulation of protein stability
GO:0031672 C A band
GO:0033292 P T-tubule organization
GO:0034394 P protein localization to cell surface
GO:0034613 P cellular protein localization
GO:0036309 P protein localization to M-band
GO:0036371 P protein localization to T-tubule
GO:0042383 C sarcolemma
GO:0042981 P regulation of apoptotic process
GO:0043034 C costamere
GO:0043268 P positive regulation of potassium ion transport
GO:0044325 F transmembrane transporter binding
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0048471 C perinuclear region of cytoplasm
GO:0050821 P protein stabilization
GO:0051117 F ATPase binding
GO:0051924 P regulation of calcium ion transport
GO:0051928 P positive regulation of calcium ion transport
GO:0055117 P regulation of cardiac muscle contraction
GO:0060048 P cardiac muscle contraction
GO:0070972 P protein localization to endoplasmic reticulum
GO:0072659 P protein localization to plasma membrane
GO:0072661 P protein localization to plasma membrane
GO:0086004 P regulation of cardiac muscle cell contraction
GO:0086014 P atrial cardiac muscle cell action potential
GO:0086015 P SA node cell action potential
GO:0086036 P regulation of cardiac muscle cell membrane potential
GO:0086066 P atrial cardiac muscle cell to AV node cell communication
GO:0086070 P SA node cell to atrial cardiac muscle cell communication
GO:0086091 P regulation of heart rate by cardiac conduction
GO:0097481 C postsynaptic density
GO:0098904 P regulation of AV node cell action potential
GO:0098907 P regulation of SA node cell action potential
GO:0098910 P regulation of atrial cardiac muscle cell action potential
GO:1901018 P positive regulation of potassium ion transmembrane transporter activity
GO:1901019 P regulation of calcium ion transmembrane transporter activity
GO:1901021 P positive regulation of calcium ion transmembrane transporter activity
GO:2001257 P regulation of cation channel activity
GO:2001259 P positive regulation of cation channel activity
2271 O_BomoOtmSK12044_complete:A_BomoOtmSK_comp14175_c0_seq3
399bp
 ankyrin-3_isoform_X1_[Bombyx_mori]
GO:0002027 P regulation of heart rate
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006874 P cellular calcium ion homeostasis
GO:0007165 P signal transduction
GO:0008093 F cytoskeletal anchor activity
GO:0008104 P protein localization
GO:0010628 P positive regulation of gene expression
GO:0010881 P regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion
GO:0010882 P regulation of cardiac muscle contraction by calcium ion signaling
GO:0014704 C intercalated disc
GO:0015459 F potassium channel regulator activity
GO:0016020 C membrane
GO:0016324 C apical plasma membrane
GO:0030018 C Z disc
GO:0030054 C cell junction
GO:0030315 C T-tubule
GO:0030507 F spectrin binding
GO:0030674 F protein-macromolecule adaptor activity
GO:0031430 C M band
GO:0031647 P regulation of protein stability
GO:0031672 C A band
GO:0033292 P T-tubule organization
GO:0034394 P protein localization to cell surface
GO:0034613 P cellular protein localization
GO:0036309 P protein localization to M-band
GO:0036371 P protein localization to T-tubule
GO:0042383 C sarcolemma
GO:0042981 P regulation of apoptotic process
GO:0043034 C costamere
GO:0043268 P positive regulation of potassium ion transport
GO:0044325 F transmembrane transporter binding
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0048471 C perinuclear region of cytoplasm
GO:0050821 P protein stabilization
GO:0051117 F ATPase binding
GO:0051924 P regulation of calcium ion transport
GO:0051928 P positive regulation of calcium ion transport
GO:0055117 P regulation of cardiac muscle contraction
GO:0060048 P cardiac muscle contraction
GO:0070972 P protein localization to endoplasmic reticulum
GO:0072659 P protein localization to plasma membrane
GO:0072661 P protein localization to plasma membrane
GO:0086004 P regulation of cardiac muscle cell contraction
GO:0086014 P atrial cardiac muscle cell action potential
GO:0086015 P SA node cell action potential
GO:0086036 P regulation of cardiac muscle cell membrane potential
GO:0086066 P atrial cardiac muscle cell to AV node cell communication
GO:0086070 P SA node cell to atrial cardiac muscle cell communication
GO:0086091 P regulation of heart rate by cardiac conduction
GO:0097481 C postsynaptic density
GO:0098904 P regulation of AV node cell action potential
GO:0098907 P regulation of SA node cell action potential
GO:0098910 P regulation of atrial cardiac muscle cell action potential
GO:1901018 P positive regulation of potassium ion transmembrane transporter activity
GO:1901019 P regulation of calcium ion transmembrane transporter activity
GO:1901021 P positive regulation of calcium ion transmembrane transporter activity
GO:2001257 P regulation of cation channel activity
GO:2001259 P positive regulation of cation channel activity
2272 O_BomoOtmSK12045_complete:A_BomoOtmSK_comp14177_c0_seq1
191bp
 G-protein_coupled_receptor_143-like_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0004930 F G protein-coupled receptor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006726 P eye pigment biosynthetic process
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007218 P neuropeptide signaling pathway
GO:0007601 P visual perception
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0032400 P melanosome localization
GO:0032402 P melanosome transport
GO:0032438 P melanosome organization
GO:0033162 C melanosome membrane
GO:0035240 F dopamine binding
GO:0035584 P calcium-mediated signaling using intracellular calcium source
GO:0035643 F L-DOPA receptor activity
GO:0042470 C melanosome
GO:0048015 P phosphatidylinositol-mediated signaling
GO:0050848 P regulation of calcium-mediated signaling
GO:0072544 F L-DOPA binding
GO:0072545 F tyrosine binding
GO:1902908 P regulation of melanosome transport
GO:1903056 P regulation of melanosome organization
2273 O_BomoOtmSK12046_complete:A_BomoOtmSK_comp14177_c0_seq1
120bp
 G-protein_coupled_receptor_143-like_[Bombyx_mori]
2274 O_BomoOtmSK12047_complete:A_BomoOtmSK_comp14177_c0_seq2
180bp
 G-protein_coupled_receptor_143-like_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0004930 F G protein-coupled receptor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006726 P eye pigment biosynthetic process
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007218 P neuropeptide signaling pathway
GO:0007601 P visual perception
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0032400 P melanosome localization
GO:0032402 P melanosome transport
GO:0032438 P melanosome organization
GO:0033162 C melanosome membrane
GO:0035240 F dopamine binding
GO:0035584 P calcium-mediated signaling using intracellular calcium source
GO:0035643 F L-DOPA receptor activity
GO:0042470 C melanosome
GO:0048015 P phosphatidylinositol-mediated signaling
GO:0050848 P regulation of calcium-mediated signaling
GO:0072544 F L-DOPA binding
GO:0072545 F tyrosine binding
GO:1902908 P regulation of melanosome transport
GO:1903056 P regulation of melanosome organization
2275 O_BomoOtmSK12048_complete:A_BomoOtmSK_comp14177_c0_seq3
356bp
 G-protein_coupled_receptor_143-like_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0004930 F G protein-coupled receptor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006726 P eye pigment biosynthetic process
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007218 P neuropeptide signaling pathway
GO:0007601 P visual perception
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0032400 P melanosome localization
GO:0032402 P melanosome transport
GO:0032438 P melanosome organization
GO:0033162 C melanosome membrane
GO:0035240 F dopamine binding
GO:0035584 P calcium-mediated signaling using intracellular calcium source
GO:0035643 F L-DOPA receptor activity
GO:0042470 C melanosome
GO:0048015 P phosphatidylinositol-mediated signaling
GO:0050848 P regulation of calcium-mediated signaling
GO:0072544 F L-DOPA binding
GO:0072545 F tyrosine binding
GO:1902908 P regulation of melanosome transport
GO:1903056 P regulation of melanosome organization
2276 O_BomoOtmSK12049_internal:A_BomoOtmSK_comp14178_c0_seq1
311bp
 putative_acetyltransferase-like_protein_[Gregarina_niphandrodes]
2277 O_BomoOtmSK1204_internal:A_BomoOtmSK_comp4753_c0_seq1
1366bp
 protein_outspread_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
2278 O_BomoOtmSK12050_internal:A_BomoOtmSK_comp14178_c0_seq1
311bp
 RNA_polymerase-associated_protein_CTR9_homolog_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016570 P histone modification
GO:0016593 C Cdc73/Paf1 complex
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035327 C euchromatin
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051571 P positive regulation of histone H3-K4 methylation
GO:0080182 P histone H3-K4 trimethylation
2279 O_BomoOtmSK12051_internal:A_BomoOtmSK_comp14178_c0_seq1
311bp
2280 O_BomoOtmSK12052_5prime_partial:A_BomoOtmSK_comp14178_c0_seq1
111bp
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