SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/35878
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2221 O_BomoOtmSK119_5prime_partial:A_BomoOtmSK_comp464_c1_seq1
100bp
2222 O_BomoOtmSK11_internal:A_BomoOtmSK_comp32_c1_seq1
116bp
 putative_leucine-rich_repeat-containing_protein_DDB_G0290503_[Bombyx_mori]
2223 O_BomoOtmSK12000_complete:A_BomoOtmSK_comp14162_c1_seq1
127bp
 uncharacterized_protein_LOC110384700_[Bombyx_mori]
2224 O_BomoOtmSK12001_complete:A_BomoOtmSK_comp14162_c1_seq1
105bp
 uncharacterized_protein_LOC101744846_[Bombyx_mori]
2225 O_BomoOtmSK12002_complete:A_BomoOtmSK_comp14162_c1_seq2
127bp
 uncharacterized_protein_LOC110384700_[Bombyx_mori]
2226 O_BomoOtmSK12003_complete:A_BomoOtmSK_comp14162_c1_seq2
114bp
 putative_p19_protein_[Operophtera_brumata]
2227 O_BomoOtmSK12004_complete:A_BomoOtmSK_comp14162_c1_seq2
105bp
 uncharacterized_protein_LOC101744846_[Bombyx_mori]
2228 O_BomoOtmSK12005_internal:A_BomoOtmSK_comp14163_c0_seq1
104bp
 hypothetical_protein_[Acinetobacter_baumannii]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
2229 O_BomoOtmSK12006_3prime_partial:A_BomoOtmSK_comp14164_c0_seq1
411bp
 mitochondrial_ribonuclease_P_protein_1_homolog_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0008033 P tRNA processing
GO:0008150 P biological_process
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
2230 O_BomoOtmSK12007_5prime_partial:A_BomoOtmSK_comp14165_c0_seq1
110bp
 sorting_nexin-14-like_[Helicoverpa_armigera]
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0006914 P autophagy
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0021680 P cerebellar Purkinje cell layer development
GO:0030425 C dendrite
GO:0030902 P hindbrain development
GO:0031902 C late endosome membrane
GO:0035091 F phosphatidylinositol binding
GO:0042995 C cell projection
GO:0080025 F phosphatidylinositol-3,5-bisphosphate binding
GO:0097352 P autophagosome maturation
2231 O_BomoOtmSK12008_complete:A_BomoOtmSK_comp14166_c0_seq1
193bp
 sodium/potassium-transporting_ATPase_subunit_alpha_isoform_X7_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0001894 P tissue homeostasis
GO:0005391 F P-type sodium:potassium-exchanging transporter activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005890 C sodium:potassium-exchanging ATPase complex
GO:0005918 C septate junction
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006813 P potassium ion transport
GO:0006814 P sodium ion transport
GO:0006883 P cellular sodium ion homeostasis
GO:0007268 P chemical synaptic transmission
GO:0007605 P sensory perception of sound
GO:0007626 P locomotory behavior
GO:0007630 P jump response
GO:0008152 P metabolic process
GO:0008324 F cation transmembrane transporter activity
GO:0008340 P determination of adult lifespan
GO:0008344 P adult locomotory behavior
GO:0008360 P regulation of cell shape
GO:0009266 P response to temperature stimulus
GO:0009612 P response to mechanical stimulus
GO:0010107 P potassium ion import across plasma membrane
GO:0010248 P establishment or maintenance of transmembrane electrochemical gradient
GO:0015991 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0016787 F hydrolase activity
GO:0019991 P septate junction assembly
GO:0030007 P cellular potassium ion homeostasis
GO:0035152 P regulation of tube architecture, open tracheal system
GO:0035158 P regulation of tube diameter, open tracheal system
GO:0035159 P regulation of tube length, open tracheal system
GO:0036376 P sodium ion export across plasma membrane
GO:0046872 F metal ion binding
GO:0050905 P neuromuscular process
GO:0051124 P synaptic assembly at neuromuscular junction
GO:0060439 P trachea morphogenesis
2232 O_BomoOtmSK12009_complete:A_BomoOtmSK_comp14166_c0_seq2
1010bp
 sodium/potassium-transporting_ATPase_subunit_alpha_isoform_X6_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0001894 P tissue homeostasis
GO:0005391 F P-type sodium:potassium-exchanging transporter activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005890 C sodium:potassium-exchanging ATPase complex
GO:0005918 C septate junction
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006813 P potassium ion transport
GO:0006814 P sodium ion transport
GO:0006883 P cellular sodium ion homeostasis
GO:0007268 P chemical synaptic transmission
GO:0007605 P sensory perception of sound
GO:0007626 P locomotory behavior
GO:0007630 P jump response
GO:0008152 P metabolic process
GO:0008324 F cation transmembrane transporter activity
GO:0008340 P determination of adult lifespan
GO:0008344 P adult locomotory behavior
GO:0008360 P regulation of cell shape
GO:0009266 P response to temperature stimulus
GO:0009612 P response to mechanical stimulus
GO:0010107 P potassium ion import across plasma membrane
GO:0010248 P establishment or maintenance of transmembrane electrochemical gradient
GO:0015991 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0016787 F hydrolase activity
GO:0019991 P septate junction assembly
GO:0030007 P cellular potassium ion homeostasis
GO:0035152 P regulation of tube architecture, open tracheal system
GO:0035158 P regulation of tube diameter, open tracheal system
GO:0035159 P regulation of tube length, open tracheal system
GO:0036376 P sodium ion export across plasma membrane
GO:0046872 F metal ion binding
GO:0050905 P neuromuscular process
GO:0051124 P synaptic assembly at neuromuscular junction
GO:0060439 P trachea morphogenesis
2233 O_BomoOtmSK1200_3prime_partial:A_BomoOtmSK_comp4750_c0_seq2
348bp
 E3_ubiquitin-protein_ligase_TRIM33_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
2234 O_BomoOtmSK12010_complete:A_BomoOtmSK_comp14166_c0_seq2
190bp
 hypothetical_protein_ALC62_06051_[Cyphomyrmex_costatus]
2235 O_BomoOtmSK12011_complete:A_BomoOtmSK_comp14166_c0_seq2
184bp
2236 O_BomoOtmSK12012_complete:A_BomoOtmSK_comp14166_c0_seq2
122bp
 Uncharacterised_protein_[Mycobacterium_abscessus_subsp._abscessus]
2237 O_BomoOtmSK12013_complete:A_BomoOtmSK_comp14166_c0_seq3
1042bp
 sodium/potassium-transporting_ATPase_subunit_alpha_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0001894 P tissue homeostasis
GO:0005391 F P-type sodium:potassium-exchanging transporter activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005890 C sodium:potassium-exchanging ATPase complex
GO:0005918 C septate junction
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006813 P potassium ion transport
GO:0006814 P sodium ion transport
GO:0006883 P cellular sodium ion homeostasis
GO:0007268 P chemical synaptic transmission
GO:0007605 P sensory perception of sound
GO:0007626 P locomotory behavior
GO:0007630 P jump response
GO:0008152 P metabolic process
GO:0008324 F cation transmembrane transporter activity
GO:0008340 P determination of adult lifespan
GO:0008344 P adult locomotory behavior
GO:0008360 P regulation of cell shape
GO:0009266 P response to temperature stimulus
GO:0009612 P response to mechanical stimulus
GO:0010107 P potassium ion import across plasma membrane
GO:0010248 P establishment or maintenance of transmembrane electrochemical gradient
GO:0015991 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0016787 F hydrolase activity
GO:0019991 P septate junction assembly
GO:0030007 P cellular potassium ion homeostasis
GO:0035152 P regulation of tube architecture, open tracheal system
GO:0035158 P regulation of tube diameter, open tracheal system
GO:0035159 P regulation of tube length, open tracheal system
GO:0036376 P sodium ion export across plasma membrane
GO:0046872 F metal ion binding
GO:0050905 P neuromuscular process
GO:0051124 P synaptic assembly at neuromuscular junction
GO:0060439 P trachea morphogenesis
2238 O_BomoOtmSK12014_complete:A_BomoOtmSK_comp14166_c0_seq3
190bp
 hypothetical_protein_ALC62_06051_[Cyphomyrmex_costatus]
2239 O_BomoOtmSK12015_complete:A_BomoOtmSK_comp14166_c0_seq3
184bp
2240 O_BomoOtmSK12016_complete:A_BomoOtmSK_comp14166_c0_seq3
122bp
 Uncharacterised_protein_[Mycobacterium_abscessus_subsp._abscessus]
2241 O_BomoOtmSK12017_complete:A_BomoOtmSK_comp14166_c0_seq4
1037bp
 sodium/potassium-transporting_ATPase_subunit_alpha_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0001894 P tissue homeostasis
GO:0005391 F P-type sodium:potassium-exchanging transporter activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005890 C sodium:potassium-exchanging ATPase complex
GO:0005918 C septate junction
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006813 P potassium ion transport
GO:0006814 P sodium ion transport
GO:0006883 P cellular sodium ion homeostasis
GO:0007268 P chemical synaptic transmission
GO:0007605 P sensory perception of sound
GO:0007626 P locomotory behavior
GO:0007630 P jump response
GO:0008152 P metabolic process
GO:0008324 F cation transmembrane transporter activity
GO:0008340 P determination of adult lifespan
GO:0008344 P adult locomotory behavior
GO:0008360 P regulation of cell shape
GO:0009266 P response to temperature stimulus
GO:0009612 P response to mechanical stimulus
GO:0010107 P potassium ion import across plasma membrane
GO:0010248 P establishment or maintenance of transmembrane electrochemical gradient
GO:0015991 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0016787 F hydrolase activity
GO:0019991 P septate junction assembly
GO:0030007 P cellular potassium ion homeostasis
GO:0035152 P regulation of tube architecture, open tracheal system
GO:0035158 P regulation of tube diameter, open tracheal system
GO:0035159 P regulation of tube length, open tracheal system
GO:0036376 P sodium ion export across plasma membrane
GO:0046872 F metal ion binding
GO:0050905 P neuromuscular process
GO:0051124 P synaptic assembly at neuromuscular junction
GO:0060439 P trachea morphogenesis
2242 O_BomoOtmSK12018_complete:A_BomoOtmSK_comp14166_c0_seq4
190bp
 hypothetical_protein_ALC62_06051_[Cyphomyrmex_costatus]
2243 O_BomoOtmSK12019_complete:A_BomoOtmSK_comp14166_c0_seq4
184bp
2244 O_BomoOtmSK1201_complete:A_BomoOtmSK_comp4751_c0_seq1
1361bp
 intraflagellar_transport_protein_140_homolog_[Bombyx_mori]
GO:0001750 C photoreceptor outer segment
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0005930 C axoneme
GO:0007368 P determination of left/right symmetry
GO:0007507 P heart development
GO:0008589 P regulation of smoothened signaling pathway
GO:0021532 P neural tube patterning
GO:0030030 P cell projection organization
GO:0030991 C intraciliary transport particle A
GO:0031513 C non-motile cilium
GO:0032391 C photoreceptor connecting cilium
GO:0035108 P limb morphogenesis
GO:0035721 P intraciliary retrograde transport
GO:0035845 P photoreceptor cell outer segment organization
GO:0036064 C ciliary basal body
GO:0042073 P intraciliary transport
GO:0042384 P cilium assembly
GO:0042995 C cell projection
GO:0048705 P skeletal system morphogenesis
GO:0060041 P retina development in camera-type eye
GO:0060271 P cilium assembly
GO:0061512 P protein localization to cilium
GO:0072001 P renal system development
GO:0072372 C cilium
GO:0097542 C ciliary tip
GO:1902017 P regulation of cilium assembly
2245 O_BomoOtmSK12020_complete:A_BomoOtmSK_comp14166_c0_seq4
122bp
 Uncharacterised_protein_[Mycobacterium_abscessus_subsp._abscessus]
2246 O_BomoOtmSK12021_complete:A_BomoOtmSK_comp14167_c0_seq1
499bp
 uncharacterized_protein_LOC101743421_isoform_X1_[Bombyx_mori]
GO:0001158 F cis-regulatory region sequence-specific DNA binding
GO:0001947 P heart looping
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008016 P regulation of heart contraction
GO:0010842 P retina layer formation
GO:0035881 P amacrine cell differentiation
GO:0036302 P atrioventricular canal development
GO:0043565 F sequence-specific DNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0060579 P ventral spinal cord interneuron fate commitment
2247 O_BomoOtmSK12022_3prime_partial:A_BomoOtmSK_comp14167_c0_seq2
461bp
 uncharacterized_protein_LOC101743421_isoform_X1_[Bombyx_mori]
GO:0001158 F cis-regulatory region sequence-specific DNA binding
GO:0001947 P heart looping
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008016 P regulation of heart contraction
GO:0010842 P retina layer formation
GO:0035881 P amacrine cell differentiation
GO:0036302 P atrioventricular canal development
GO:0043565 F sequence-specific DNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0060579 P ventral spinal cord interneuron fate commitment
2248 O_BomoOtmSK12023_complete:A_BomoOtmSK_comp14168_c0_seq1
528bp
 arrestin_domain-containing_protein_17_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0031410 C cytoplasmic vesicle
2249 O_BomoOtmSK12024_complete:A_BomoOtmSK_comp14168_c0_seq1
109bp
2250 O_BomoOtmSK12025_complete:A_BomoOtmSK_comp14168_c0_seq1
107bp
previous next from show/35878

- SilkBase 1999-2023 -