Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
1531	O_BomoOtmSK11379_5prime_partial:A_BomoOtmSK_comp13890_c0_seq2 467bp	Bomo_Chr12	LOW_QUALITY_PROTEIN:_vacuolar_protein_sorting-associated_protein_54_[Bombyx_mori]	GO:0000938 C GARP complex GO:0003674 F molecular_function GO:0005739 C mitochondrion GO:0005794 C Golgi apparatus GO:0005829 C cytosol GO:0006810 P transport GO:0006896 P Golgi to vacuole transport GO:0007275 P multicellular organism development GO:0007283 P spermatogenesis GO:0007286 P spermatid development GO:0007291 P sperm individualization GO:0015031 P protein transport GO:0019905 F syntaxin binding GO:0030154 P cell differentiation GO:0042147 P retrograde transport, endosome to Golgi
1532	O_BomoOtmSK1137_complete:A_BomoOtmSK_comp4639_c0_seq2 136bp	Bomo_Chr25
1533	O_BomoOtmSK11380_complete:A_BomoOtmSK_comp13891_c0_seq1 262bp	Bomo_Chr5	RNA_binding_region_containing_protein_1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0006397 P mRNA processing GO:0007275 P multicellular organism development GO:0008380 P RNA splicing GO:0030154 P cell differentiation
1534	O_BomoOtmSK11381_complete:A_BomoOtmSK_comp13893_c0_seq1 473bp	Bomo_Chr8	uncharacterized_protein_LOC101735459_[Bombyx_mori]	GO:0000014 F single-stranded DNA endodeoxyribonuclease activity GO:0000077 P DNA damage checkpoint signaling GO:0000724 P double-strand break repair via homologous recombination GO:0003677 F DNA binding GO:0004518 F nuclease activity GO:0004519 F endonuclease activity GO:0005634 C nucleus GO:0006281 P DNA repair GO:0006974 P cellular response to DNA damage stimulus GO:0007049 P cell cycle GO:0007067 P mitotic cell cycle GO:0016787 F hydrolase activity GO:0051301 P cell division GO:0051321 P meiotic cell cycle GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1535	O_BomoOtmSK11382_complete:A_BomoOtmSK_comp13893_c0_seq1 160bp	Bomo_Chr8
1536	O_BomoOtmSK11383_complete:A_BomoOtmSK_comp13895_c0_seq1 175bp	Bomo_Chr4	DNA_repair_protein_complementing_XP-G_cells_isoform_X2_[Bombyx_mori]
1537	O_BomoOtmSK11384_complete:A_BomoOtmSK_comp13895_c0_seq2 952bp	Bomo_Chr4	DNA_repair_protein_complementing_XP-G_cells_isoform_X2_[Bombyx_mori]	GO:0003677 F DNA binding GO:0003697 F single-stranded DNA binding GO:0003824 F catalytic activity GO:0004518 F nuclease activity GO:0004519 F endonuclease activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0006281 P DNA repair GO:0006289 P nucleotide-excision repair GO:0006974 P cellular response to DNA damage stimulus GO:0009408 P response to heat GO:0010213 P non-photoreactive DNA repair GO:0016787 F hydrolase activity GO:0016788 F hydrolase activity, acting on ester bonds GO:0046872 F metal ion binding GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1538	O_BomoOtmSK11385_complete:A_BomoOtmSK_comp13895_c0_seq2 154bp	Bomo_Chr4
1539	O_BomoOtmSK11386_complete:A_BomoOtmSK_comp13895_c0_seq2 137bp	Bomo_Chr4	DNA_repair_protein_complementing_XP-G_cells_isoform_X1_[Bombyx_mori]	GO:0003677 F DNA binding GO:0003697 F single-stranded DNA binding GO:0003824 F catalytic activity GO:0004518 F nuclease activity GO:0004519 F endonuclease activity GO:0005634 C nucleus GO:0006281 P DNA repair GO:0006289 P nucleotide-excision repair GO:0006974 P cellular response to DNA damage stimulus GO:0016787 F hydrolase activity GO:0016788 F hydrolase activity, acting on ester bonds GO:0046872 F metal ion binding GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1540	O_BomoOtmSK11387_complete:A_BomoOtmSK_comp13895_c0_seq2 102bp	Bomo_Chr4
1541	O_BomoOtmSK11388_complete:A_BomoOtmSK_comp13895_c0_seq3 903bp	Bomo_Chr4	DNA_repair_protein_complementing_XP-G_cells_isoform_X2_[Bombyx_mori]	GO:0003677 F DNA binding GO:0003697 F single-stranded DNA binding GO:0003824 F catalytic activity GO:0004518 F nuclease activity GO:0004519 F endonuclease activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0006281 P DNA repair GO:0006289 P nucleotide-excision repair GO:0006974 P cellular response to DNA damage stimulus GO:0009408 P response to heat GO:0010213 P non-photoreactive DNA repair GO:0016787 F hydrolase activity GO:0016788 F hydrolase activity, acting on ester bonds GO:0046872 F metal ion binding GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1542	O_BomoOtmSK11389_complete:A_BomoOtmSK_comp13895_c0_seq3 106bp	Bomo_Chr4	DNA_repair_protein_complementing_XP-G_cells_isoform_X2_[Bombyx_mori]
1543	O_BomoOtmSK1138_internal:A_BomoOtmSK_comp4643_c0_seq1 142bp	Bomo_Chr10	vacuolar_protein_sorting-associated_protein_13D_[Bombyx_mori]	GO:0005622 C intracellular anatomical structure GO:0006623 P protein targeting to vacuole GO:0019898 C extrinsic component of membrane GO:0045053 P protein retention in Golgi apparatus GO:0070062 C extracellular exosome
1544	O_BomoOtmSK11390_complete:A_BomoOtmSK_comp13895_c0_seq3 102bp	Bomo_Chr4
1545	O_BomoOtmSK11391_complete:A_BomoOtmSK_comp13895_c0_seq4 952bp	Bomo_Chr4	DNA_repair_protein_complementing_XP-G_cells_isoform_X2_[Bombyx_mori]	GO:0003677 F DNA binding GO:0003697 F single-stranded DNA binding GO:0003824 F catalytic activity GO:0004518 F nuclease activity GO:0004519 F endonuclease activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0006281 P DNA repair GO:0006289 P nucleotide-excision repair GO:0006974 P cellular response to DNA damage stimulus GO:0009408 P response to heat GO:0010213 P non-photoreactive DNA repair GO:0016787 F hydrolase activity GO:0016788 F hydrolase activity, acting on ester bonds GO:0046872 F metal ion binding GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1546	O_BomoOtmSK11392_complete:A_BomoOtmSK_comp13895_c0_seq4 154bp	Bomo_Chr4
1547	O_BomoOtmSK11393_complete:A_BomoOtmSK_comp13895_c0_seq4 102bp	Bomo_Chr4
1548	O_BomoOtmSK11394_complete:A_BomoOtmSK_comp13895_c0_seq5 903bp	Bomo_Chr4	DNA_repair_protein_complementing_XP-G_cells_isoform_X2_[Bombyx_mori]	GO:0003677 F DNA binding GO:0003697 F single-stranded DNA binding GO:0003824 F catalytic activity GO:0004518 F nuclease activity GO:0004519 F endonuclease activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0006281 P DNA repair GO:0006289 P nucleotide-excision repair GO:0006974 P cellular response to DNA damage stimulus GO:0009408 P response to heat GO:0010213 P non-photoreactive DNA repair GO:0016787 F hydrolase activity GO:0016788 F hydrolase activity, acting on ester bonds GO:0046872 F metal ion binding GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1549	O_BomoOtmSK11395_complete:A_BomoOtmSK_comp13895_c0_seq5 137bp	Bomo_Chr4	DNA_repair_protein_complementing_XP-G_cells_isoform_X1_[Bombyx_mori]	GO:0003677 F DNA binding GO:0003697 F single-stranded DNA binding GO:0003824 F catalytic activity GO:0004518 F nuclease activity GO:0004519 F endonuclease activity GO:0005634 C nucleus GO:0006281 P DNA repair GO:0006289 P nucleotide-excision repair GO:0006974 P cellular response to DNA damage stimulus GO:0016787 F hydrolase activity GO:0016788 F hydrolase activity, acting on ester bonds GO:0046872 F metal ion binding GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1550	O_BomoOtmSK11396_complete:A_BomoOtmSK_comp13895_c0_seq5 106bp	Bomo_Chr4	DNA_repair_protein_complementing_XP-G_cells_isoform_X2_[Bombyx_mori]
1551	O_BomoOtmSK11397_complete:A_BomoOtmSK_comp13895_c0_seq5 102bp	Bomo_Chr4
1552	O_BomoOtmSK11398_complete:A_BomoOtmSK_comp13897_c0_seq1 1597bp	Bomo_Chr4	LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101743043_[Bombyx_mori]	GO:0005515 F protein binding GO:0005737 C cytoplasm GO:0005739 C mitochondrion GO:0005741 C mitochondrial outer membrane GO:0005776 C autophagosome GO:0005829 C cytosol GO:0005930 C axoneme GO:0006914 P autophagy GO:0007275 P multicellular organism development GO:0007399 P nervous system development GO:0008285 P negative regulation of cell population proliferation GO:0016236 P macroautophagy GO:0021915 P neural tube development GO:0030154 P cell differentiation GO:0031410 C cytoplasmic vesicle GO:0031625 F ubiquitin protein ligase binding GO:0043524 P negative regulation of neuron apoptotic process GO:0043552 P positive regulation of phosphatidylinositol 3-kinase activity GO:0045335 C phagocytic vesicle GO:0048471 C perinuclear region of cytoplasm GO:0061734 P parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization GO:1903599 P positive regulation of autophagy of mitochondrion GO:2000785 P regulation of autophagosome assembly
1553	O_BomoOtmSK11399_complete:A_BomoOtmSK_comp13897_c0_seq1 190bp	Bomo_Chr4
1554	O_BomoOtmSK1139_3prime_partial:A_BomoOtmSK_comp4644_c0_seq1 506bp	Bomo_Chr20	zinc_finger_protein_808_[Bombyx_mori]	GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0003700 F DNA-binding transcription factor activity GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0008270 F zinc ion binding GO:0046872 F metal ion binding
1555	O_BomoOtmSK113_internal:A_BomoOtmSK_comp418_c1_seq1 123bp	Bomo_Chr19	midasin_isoform_X1_[Bombyx_mori]	GO:0000027 P ribosomal large subunit assembly GO:0000166 F nucleotide binding GO:0005515 F protein binding GO:0005524 F ATP binding GO:0005634 C nucleus GO:0005730 C nucleolus GO:0005737 C cytoplasm GO:0006461 P protein-containing complex assembly GO:0008152 P metabolic process GO:0016020 C membrane GO:0016887 F ATP hydrolysis activity GO:0045111 C intermediate filament cytoskeleton GO:0051082 F unfolded protein binding
1556	O_BomoOtmSK11400_complete:A_BomoOtmSK_comp13897_c0_seq1 134bp	Bomo_Chr4
1557	O_BomoOtmSK11401_5prime_partial:A_BomoOtmSK_comp13897_c0_seq2 381bp	Bomo_Chr4	LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101743043_[Bombyx_mori]	GO:0005515 F protein binding GO:0005737 C cytoplasm GO:0005739 C mitochondrion GO:0005741 C mitochondrial outer membrane GO:0005776 C autophagosome GO:0005829 C cytosol GO:0005930 C axoneme GO:0006914 P autophagy GO:0007275 P multicellular organism development GO:0007399 P nervous system development GO:0008285 P negative regulation of cell population proliferation GO:0016236 P macroautophagy GO:0021915 P neural tube development GO:0030154 P cell differentiation GO:0031410 C cytoplasmic vesicle GO:0031625 F ubiquitin protein ligase binding GO:0043524 P negative regulation of neuron apoptotic process GO:0043552 P positive regulation of phosphatidylinositol 3-kinase activity GO:0045335 C phagocytic vesicle GO:0048471 C perinuclear region of cytoplasm GO:0061734 P parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization GO:1903599 P positive regulation of autophagy of mitochondrion GO:2000785 P regulation of autophagosome assembly
1558	O_BomoOtmSK11402_complete:A_BomoOtmSK_comp13897_c0_seq2 134bp	Bomo_Chr4
1559	O_BomoOtmSK11403_complete:A_BomoOtmSK_comp13898_c0_seq1 535bp	Bomo_Chr1	nuclear_hormone_receptor_FTZ-F1_[Bombyx_mori]	GO:0003677 F DNA binding GO:0003700 F DNA-binding transcription factor activity GO:0003707 F steroid hormone receptor activity GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0008270 F zinc ion binding GO:0043401 P steroid hormone mediated signaling pathway GO:0043565 F sequence-specific DNA binding GO:0046872 F metal ion binding
1560	O_BomoOtmSK11404_complete:A_BomoOtmSK_comp13898_c0_seq2 555bp	Bomo_Chr1	nuclear_hormone_receptor_FTZ-F1_isoform_X3_[Bombyx_mori]	GO:0003677 F DNA binding GO:0003700 F DNA-binding transcription factor activity GO:0003707 F steroid hormone receptor activity GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0008270 F zinc ion binding GO:0043401 P steroid hormone mediated signaling pathway GO:0043565 F sequence-specific DNA binding GO:0046872 F metal ion binding