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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
991 O_BomaMG11387_complete:A_BomaMG_comp23740_c0_seq5
691bp
992 O_BomaMG11388_complete:A_BomaMG_comp23740_c0_seq5
270bp
993 O_BomaMG1138_complete:A_BomaMG_comp11977_c0_seq1
396bp
PREDICTED:_uncharacterized_protein_LOC101740299_[Bombyx_mori]
994 O_BomaMG11391_5prime_partial:A_BomaMG_comp23740_c0_seq6
687bp
995 O_BomaMG11392_complete:A_BomaMG_comp23740_c0_seq6
270bp
996 O_BomaMG11395_5prime_partial:A_BomaMG_comp23740_c0_seq7
904bp
997 O_BomaMG11398_complete:A_BomaMG_comp23740_c0_seq8
691bp
998 O_BomaMG11399_complete:A_BomaMG_comp23740_c0_seq8
270bp
999 O_BomaMG1139_complete:A_BomaMG_comp11977_c0_seq2
370bp
PREDICTED:_uncharacterized_protein_LOC101740299_[Bombyx_mori]
1000 O_BomaMG11402_5prime_partial:A_BomaMG_comp23741_c0_seq1
229bp
1001 O_BomaMG11404_5prime_partial:A_BomaMG_comp23741_c0_seq3
205bp
1002 O_BomaMG11408_internal:A_BomaMG_comp23741_c1_seq1
224bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016570 P histone modification
GO:0016593 C Cdc73/Paf1 complex
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035327 C euchromatin
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051571 P positive regulation of histone H3-K4 methylation
GO:0080182 P histone H3-K4 trimethylation
1003 O_BomaMG1140_internal:A_BomaMG_comp11982_c0_seq1
350bp
PREDICTED:_transcription_initiation_factor_TFIID_subunit_4_[Bombyx_mori]
1004 O_BomaMG11411_complete:A_BomaMG_comp23742_c0_seq1
599bp
GO:0003723 F RNA binding
GO:0005047 F signal recognition particle binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005786 C signal recognition particle, endoplasmic reticulum targeting
GO:0006614 P SRP-dependent cotranslational protein targeting to membrane
GO:0008312 F 7S RNA binding
GO:0030529 C ribonucleoprotein complex
GO:0030942 F endoplasmic reticulum signal peptide binding
GO:0045047 P protein targeting to ER
1005 O_BomaMG11414_3prime_partial:A_BomaMG_comp23743_c0_seq1
325bp
1006 O_BomaMG11416_3prime_partial:A_BomaMG_comp23743_c0_seq2
382bp
1007 O_BomaMG1141_complete:A_BomaMG_comp11982_c1_seq1
480bp
PREDICTED:_transcription_initiation_factor_TFIID_subunit_4_[Bombyx_mori]
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0001092 F TFIIA-class transcription factor complex binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005669 C transcription factor TFIID complex
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0007517 P muscle organ development
GO:0008134 F transcription factor binding
GO:0022008 P neurogenesis
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0048813 P dendrite morphogenesis
GO:0051123 P RNA polymerase II preinitiation complex assembly
1008 O_BomaMG11420_complete:A_BomaMG_comp23746_c0_seq2
336bp
GO:0000139 C Golgi membrane
GO:0005456 F CMP-N-acetylneuraminate transmembrane transporter activity
GO:0005457 F GDP-fucose transmembrane transporter activity
GO:0005458 F GDP-mannose transmembrane transporter activity
GO:0005459 F UDP-galactose transmembrane transporter activity
GO:0005460 F UDP-glucose transmembrane transporter activity
GO:0005461 F UDP-glucuronic acid transmembrane transporter activity
GO:0005462 F UDP-N-acetylglucosamine transmembrane transporter activity
GO:0005463 F UDP-N-acetylgalactosamine transmembrane transporter activity
GO:0005794 C Golgi apparatus
GO:0005798 C Golgi-associated vesicle
GO:0006810 P transport
GO:0007625 P grooming behavior
GO:0008643 P carbohydrate transport
GO:0015782 P CMP-N-acetylneuraminate transmembrane transport
GO:0015783 P GDP-fucose transmembrane transport
GO:0015784 P GDP-mannose transmembrane transport
GO:0015785 P UDP-galactose transmembrane transport
GO:0015786 P UDP-glucose transmembrane transport
GO:0015787 P UDP-glucuronic acid transmembrane transport
GO:0015788 P UDP-N-acetylglucosamine transmembrane transport
GO:0015789 P UDP-N-acetylgalactosamine transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0036066 P protein O-linked fucosylation
GO:0036071 P N-glycan fucosylation
GO:0036085 P GDP-fucose import into Golgi lumen
GO:0048193 P Golgi vesicle transport
1009 O_BomaMG11422_5prime_partial:A_BomaMG_comp23746_c1_seq1
189bp
GO:0003824 F catalytic activity
GO:0004423 F iduronate-2-sulfatase activity
GO:0005764 C lysosome
GO:0006027 P glycosaminoglycan catabolic process
GO:0008152 P metabolic process
GO:0008484 F sulfuric ester hydrolase activity
GO:0016787 F hydrolase activity
GO:0030207 P chondroitin sulfate catabolic process
GO:0043202 C lysosomal lumen
GO:0046872 F metal ion binding
1010 O_BomaMG11423_internal:A_BomaMG_comp23747_c0_seq1
577bp
1011 O_BomaMG11424_3prime_partial:A_BomaMG_comp23747_c1_seq1
208bp
1012 O_BomaMG11426_internal:A_BomaMG_comp23747_c2_seq1
479bp
GO:0000166 F nucleotide binding
GO:0001172 P transcription, RNA-templated
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003968 F RNA-directed 5'-3' RNA polymerase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0006351 P transcription, DNA-templated
GO:0006396 P RNA processing
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008174 F mRNA methyltransferase activity
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0032259 P methylation
GO:0039694 P viral RNA genome replication
GO:0080009 P mRNA methylation
1013 O_BomaMG11427_complete:A_BomaMG_comp23748_c0_seq1
517bp
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006606 P protein import into nucleus
GO:0006607 P NLS-bearing protein import into nucleus
GO:0006810 P transport
GO:0008022 F protein C-terminus binding
GO:0008139 F nuclear localization sequence binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
1014 O_BomaMG11429_complete:A_BomaMG_comp23748_c0_seq2
517bp
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006606 P protein import into nucleus
GO:0006607 P NLS-bearing protein import into nucleus
GO:0006810 P transport
GO:0008022 F protein C-terminus binding
GO:0008139 F nuclear localization sequence binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
1015 O_BomaMG1142_internal:A_BomaMG_comp11986_c0_seq1
451bp
PREDICTED:_uncharacterized_protein_LOC101744337_[Bombyx_mori]
1016 O_BomaMG11430_3prime_partial:A_BomaMG_comp23749_c0_seq1
348bp
GO:0000049 F tRNA binding
GO:0001510 P RNA methylation
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0007614 P short-term memory
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0016428 F tRNA (cytosine-5-)-methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
1017 O_BomaMG11432_5prime_partial:A_BomaMG_comp23749_c1_seq1
373bp
GO:0000049 F tRNA binding
GO:0001510 P RNA methylation
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0007614 P short-term memory
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0016428 F tRNA (cytosine-5-)-methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
1018 O_BomaMG11433_complete:A_BomaMG_comp23750_c0_seq1
299bp
GO:0003382 P epithelial cell morphogenesis
GO:0003735 F structural constituent of ribosome
GO:0005215 F transporter activity
GO:0005476 F carnitine:acyl carnitine antiporter activity
GO:0005739 C mitochondrion
GO:0005740 C mitochondrial envelope
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0006839 P mitochondrial transport
GO:0006844 P acyl carnitine transport
GO:0006909 P phagocytosis
GO:0007275 P multicellular organism development
GO:0015879 P carnitine transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035002 P liquid clearance, open tracheal system
1019 O_BomaMG11434_complete:A_BomaMG_comp23751_c0_seq1
555bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004816 F asparagine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006421 P asparaginyl-tRNA aminoacylation
GO:0016874 F ligase activity
1020 O_BomaMG11435_complete:A_BomaMG_comp23752_c0_seq1
225bp
GO:0002092 P positive regulation of receptor internalization
GO:0005576 C extracellular region
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005771 C multivesicular body
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0007155 P cell adhesion
GO:0007160 P cell-matrix adhesion
GO:0007166 P cell surface receptor signaling pathway
GO:0012505 C endomembrane system
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016477 P cell migration
GO:0031226 C intrinsic component of plasma membrane
GO:0031902 C late endosome membrane
GO:0035646 P endosome to melanosome transport
GO:0042470 C melanosome
GO:0045807 P positive regulation of endocytosis
GO:0048757 P pigment granule maturation
GO:0070062 C extracellular exosome
GO:0097487 C multivesicular body, internal vesicle
GO:1900746 P regulation of vascular endothelial growth factor signaling pathway
GO:2001046 P positive regulation of integrin-mediated signaling pathway
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