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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1801 O_BomaMG12593_complete:A_BomaMG_comp24205_c0_seq1
712bp
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
1802 O_BomaMG12594_3prime_partial:A_BomaMG_comp24205_c0_seq2
730bp
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
1803 O_BomaMG12595_complete:A_BomaMG_comp24206_c0_seq1
305bp
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1804 O_BomaMG12596_complete:A_BomaMG_comp24206_c0_seq2
305bp
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1805 O_BomaMG12597_complete:A_BomaMG_comp24206_c0_seq3
305bp
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1806 O_BomaMG12598_5prime_partial:A_BomaMG_comp24208_c0_seq1
254bp
GO:0003824 F catalytic activity
GO:0004957 F prostaglandin E receptor activity
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006693 P prostaglandin metabolic process
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007565 P female pregnancy
GO:0007567 P parturition
GO:0008152 P metabolic process
GO:0016323 C basolateral plasma membrane
GO:0016404 F 15-hydroxyprostaglandin dehydrogenase (NAD+) activity
GO:0016491 F oxidoreductase activity
GO:0030728 P ovulation
GO:0045786 P negative regulation of cell cycle
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
GO:0070403 F NAD+ binding
GO:0070493 P thrombin-activated receptor signaling pathway
GO:0097070 P ductus arteriosus closure
1807 O_BomaMG12599_complete:A_BomaMG_comp24210_c0_seq1
394bp
1808 O_BomaMG1259_complete:A_BomaMG_comp12151_c0_seq1
639bp
HOP_precursor_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004714 F transmembrane receptor protein tyrosine kinase activity
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007165 P signal transduction
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0042052 P rhabdomere development
GO:0046716 P muscle cell cellular homeostasis
GO:0072499 P photoreceptor cell axon guidance
1809 O_BomaMG125_5prime_partial:A_BomaMG_comp1421_c0_seq1
144bp
1810 O_BomaMG12600_3prime_partial:A_BomaMG_comp24210_c0_seq2
110bp
1811 O_BomaMG12601_complete:A_BomaMG_comp24210_c0_seq3
412bp
1812 O_BomaMG12602_complete:A_BomaMG_comp24211_c0_seq1
326bp
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007097 P nuclear migration
GO:0043434 P response to peptide hormone
GO:0051301 P cell division
1813 O_BomaMG12603_complete:A_BomaMG_comp24211_c0_seq2
326bp
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007097 P nuclear migration
GO:0043434 P response to peptide hormone
GO:0051301 P cell division
1814 O_BomaMG12604_3prime_partial:A_BomaMG_comp24212_c0_seq1
193bp
GO:0003674 F molecular_function
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0007010 P cytoskeleton organization
GO:0008360 P regulation of cell shape
GO:0014003 P oligodendrocyte development
GO:0030027 C lamellipodium
GO:0030032 P lamellipodium assembly
GO:0030036 P actin cytoskeleton organization
GO:0031643 P positive regulation of myelination
GO:0070062 C extracellular exosome
1815 O_BomaMG12607_complete:A_BomaMG_comp24215_c0_seq1
258bp
GO:0003674 F molecular_function
GO:0003735 F structural constituent of ribosome
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005761 C mitochondrial ribosome
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0008150 P biological_process
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
GO:0070125 P mitochondrial translational elongation
GO:0070126 P mitochondrial translational termination
1816 O_BomaMG12608_complete:A_BomaMG_comp24216_c1_seq1
412bp
GO:0001934 P positive regulation of protein phosphorylation
GO:0002092 P positive regulation of receptor internalization
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0007165 P signal transduction
GO:0009968 P negative regulation of signal transduction
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0031143 C pseudopodium
GO:0031410 C cytoplasmic vesicle
GO:0042995 C cell projection
1817 O_BomaMG1260_complete:A_BomaMG_comp12153_c0_seq1
281bp
putative_translin-associated_factor_X_[Danaus_plexippus]
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0030154 P cell differentiation
GO:0031687 F A2A adenosine receptor binding
GO:0032403 F protein-containing complex binding
GO:0043565 F sequence-specific DNA binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
1818 O_BomaMG12612_complete:A_BomaMG_comp24217_c1_seq1
540bp
GO:0006915 P apoptotic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1819 O_BomaMG12615_complete:A_BomaMG_comp24219_c0_seq1
128bp
1820 O_BomaMG12616_3prime_partial:A_BomaMG_comp24220_c0_seq1
221bp
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007292 P female gamete generation
GO:0008285 P negative regulation of cell population proliferation
GO:0010468 P regulation of gene expression
GO:0042809 F vitamin D receptor binding
GO:0045671 P negative regulation of osteoclast differentiation
GO:0045778 P positive regulation of ossification
1821 O_BomaMG12618_complete:A_BomaMG_comp24221_c0_seq1
805bp
GO:0000278 P mitotic cell cycle
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0007015 P actin filament organization
GO:0007419 P ventral cord development
GO:0008023 C transcription elongation factor complex
GO:0008024 C cyclin/CDK positive transcription elongation factor complex
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0008360 P regulation of cell shape
GO:0009408 P response to heat
GO:0016538 F cyclin-dependent protein serine/threonine kinase regulator activity
GO:0019901 F protein kinase binding
GO:0032783 C super elongation complex
GO:0045737 P positive regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:1901409 P positive regulation of phosphorylation of RNA polymerase II C-terminal domain
1822 O_BomaMG1261_5prime_partial:A_BomaMG_comp12154_c0_seq1
157bp
PREDICTED:_uncharacterized_protein_LOC106129002_[Amyelois_transitella]
1823 O_BomaMG12621_internal:A_BomaMG_comp24222_c0_seq1
186bp
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005958 C DNA-dependent protein kinase-DNA ligase 4 complex
GO:0006260 P DNA replication
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016874 F ligase activity
GO:0032807 C DNA ligase IV complex
GO:0033152 P immunoglobulin V(D)J recombination
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0070419 C nonhomologous end joining complex
GO:0071897 P DNA biosynthetic process
1824 O_BomaMG12622_3prime_partial:A_BomaMG_comp24222_c1_seq1
205bp
GO:0000012 P single strand break repair
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003910 F DNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005958 C DNA-dependent protein kinase-DNA ligase 4 complex
GO:0006260 P DNA replication
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016874 F ligase activity
GO:0032807 C DNA ligase IV complex
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0071897 P DNA biosynthetic process
1825 O_BomaMG12623_3prime_partial:A_BomaMG_comp24222_c1_seq2
205bp
GO:0000012 P single strand break repair
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003910 F DNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005958 C DNA-dependent protein kinase-DNA ligase 4 complex
GO:0006260 P DNA replication
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016874 F ligase activity
GO:0032807 C DNA ligase IV complex
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0071897 P DNA biosynthetic process
1826 O_BomaMG12624_complete:A_BomaMG_comp24222_c1_seq3
818bp
GO:0000127 C transcription factor TFIIIC complex
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006383 P transcription by RNA polymerase III
GO:0031965 C nuclear membrane
GO:0042791 P 5S class rRNA transcription by RNA polymerase III
GO:0042797 P tRNA transcription by RNA polymerase III
1827 O_BomaMG12625_complete:A_BomaMG_comp24222_c1_seq4
818bp
GO:0000127 C transcription factor TFIIIC complex
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006383 P transcription by RNA polymerase III
GO:0031965 C nuclear membrane
GO:0042791 P 5S class rRNA transcription by RNA polymerase III
GO:0042797 P tRNA transcription by RNA polymerase III
1828 O_BomaMG12626_3prime_partial:A_BomaMG_comp24222_c1_seq5
205bp
GO:0000012 P single strand break repair
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003910 F DNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005958 C DNA-dependent protein kinase-DNA ligase 4 complex
GO:0006260 P DNA replication
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016874 F ligase activity
GO:0032807 C DNA ligase IV complex
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0071897 P DNA biosynthetic process
1829 O_BomaMG12627_complete:A_BomaMG_comp24222_c1_seq6
818bp
GO:0000127 C transcription factor TFIIIC complex
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006383 P transcription by RNA polymerase III
GO:0031965 C nuclear membrane
GO:0042791 P 5S class rRNA transcription by RNA polymerase III
GO:0042797 P tRNA transcription by RNA polymerase III
1830 O_BomaMG12628_5prime_partial:A_BomaMG_comp24223_c0_seq1
775bp
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0007249 P I-kappaB kinase/NF-kappaB signaling
GO:0007252 P I-kappaB phosphorylation
GO:0008384 F IkappaB kinase activity
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019901 F protein kinase binding
GO:0030866 P cortical actin cytoskeleton organization
GO:0033209 P tumor necrosis factor-mediated signaling pathway
GO:0035509 P negative regulation of myosin-light-chain-phosphatase activity
GO:0042325 P regulation of phosphorylation
GO:0042501 P serine phosphorylation of STAT protein
GO:0042803 F protein homodimerization activity
GO:0045121 C membrane raft
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0051092 P positive regulation of NF-kappaB transcription factor activity
GO:0070498 P interleukin-1-mediated signaling pathway
GO:0071356 P cellular response to tumor necrosis factor
GO:0090002 P protein localization to plasma membrane
GO:0097110 F scaffold protein binding
GO:1903140 P regulation of establishment of endothelial barrier
GO:1903347 P negative regulation of bicellular tight junction assembly
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