SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/32735
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3211 O_BomaASG12891_complete:A_BomaASG_c29988_g1_i1
105bp
3212 O_BomaASG12892_internal:A_BomaASG_c29988_g1_i2
159bp
zinc_finger_protein_26-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3213 O_BomaASG12893_3prime_partial:A_BomaASG_c29989_g1_i1
233bp
exosome_complex_exonuclease_Rrp40_[Bombyx_mori]
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000467 P exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034475 P U4 snRNA 3'-end processing
GO:0035327 C euchromatin
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045006 P DNA deamination
GO:0045190 P isotype switching
GO:0045830 P positive regulation of isotype switching
GO:0071034 P CUT catabolic process
GO:0071035 P nuclear polyadenylation-dependent rRNA catabolic process
GO:0071038 P nuclear polyadenylation-dependent tRNA catabolic process
GO:0071049 P nuclear mRNA surveillance
GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing
3214 O_BomaASG12894_5prime_partial:A_BomaASG_c29989_g1_i1
169bp
3215 O_BomaASG12895_internal:A_BomaASG_c29989_g1_i2
218bp
exosome_complex_exonuclease_Rrp40_[Bombyx_mori]
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000467 P exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034475 P U4 snRNA 3'-end processing
GO:0035327 C euchromatin
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045006 P DNA deamination
GO:0045190 P isotype switching
GO:0045830 P positive regulation of isotype switching
GO:0071034 P CUT catabolic process
GO:0071035 P nuclear polyadenylation-dependent rRNA catabolic process
GO:0071038 P nuclear polyadenylation-dependent tRNA catabolic process
GO:0071049 P nuclear mRNA surveillance
GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing
3216 O_BomaASG12896_5prime_partial:A_BomaASG_c29989_g1_i2
169bp
3217 O_BomaASG12897_complete:A_BomaASG_c29990_g1_i1
1122bp
uncharacterized_protein_LOC101744638_[Bombyx_mori]
3218 O_BomaASG12898_complete:A_BomaASG_c29990_g1_i1
127bp
3219 O_BomaASG12899_3prime_partial:A_BomaASG_c29990_g1_i2
963bp
uncharacterized_protein_LOC101744638_[Bombyx_mori]
3220 O_BomaASG1289_complete:A_BomaASG_c9141_g1_i1
134bp
3221 O_BomaASG128_complete:A_BomaASG_c792_g1_i1
109bp
3222 O_BomaASG12900_complete:A_BomaASG_c29990_g1_i2
127bp
3223 O_BomaASG12901_5prime_partial:A_BomaASG_c29991_g1_i1
379bp
round_spermatid_basic_protein_1-like_protein_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
3224 O_BomaASG12902_5prime_partial:A_BomaASG_c29991_g1_i2
540bp
round_spermatid_basic_protein_1-like_protein_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
3225 O_BomaASG12903_complete:A_BomaASG_c29991_g1_i3
1001bp
round_spermatid_basic_protein_1-like_protein_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
3226 O_BomaASG12904_complete:A_BomaASG_c29992_g1_i1
227bp
Golgi_SNAP_receptor_complex_member_1_[Bombyx_mori]
GO:0000138 C Golgi trans cisterna
GO:0000139 C Golgi membrane
GO:0000149 F SNARE binding
GO:0005484 F SNAP receptor activity
GO:0005794 C Golgi apparatus
GO:0005797 C Golgi medial cisterna
GO:0005801 C cis-Golgi network
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0006906 P vesicle fusion
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0031201 C SNARE complex
GO:0048193 P Golgi vesicle transport
GO:0048209 P regulation of vesicle targeting, to, from or within Golgi
3227 O_BomaASG12905_complete:A_BomaASG_c29992_g1_i1
123bp
3228 O_BomaASG12906_complete:A_BomaASG_c29992_g1_i1
103bp
3229 O_BomaASG12907_5prime_partial:A_BomaASG_c29996_g1_i3
282bp
PR_domain_zinc_finger_protein_5_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016567 P protein ubiquitination
GO:0046872 F metal ion binding
GO:0050767 P regulation of neurogenesis
3230 O_BomaASG12908_3prime_partial:A_BomaASG_c29997_g1_i1
290bp
DNA_replication_licensing_factor_MCM4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006270 P DNA replication initiation
GO:0007052 P mitotic spindle organization
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0042023 P DNA endoreduplication
GO:0042555 C MCM complex
GO:0043138 F 3'-5' DNA helicase activity
3231 O_BomaASG12909_complete:A_BomaASG_c29998_g1_i1
328bp
uncharacterized_protein_LOC101738950_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0019538 P protein metabolic process
3232 O_BomaASG1290_5prime_partial:A_BomaASG_c9144_g1_i1
169bp
cuticular_protein_hypothetical_21_precursor_[Bombyx_mori]
3233 O_BomaASG12910_complete:A_BomaASG_c29999_g1_i1
185bp
protein_polybromo-1_isoform_X4_[Helicoverpa_armigera]
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
3234 O_BomaASG12911_complete:A_BomaASG_c29999_g1_i2
1725bp
LOW_QUALITY_PROTEIN:_protein_polybromo-1_[Bombyx_mori]
GO:0000228 C nuclear chromosome
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007067 P mitotic cell cycle
GO:0008285 P negative regulation of cell population proliferation
GO:0016568 P chromatin organization
GO:0090544 C SWI/SNF superfamily-type complex
3235 O_BomaASG12912_complete:A_BomaASG_c29999_g1_i2
126bp
3236 O_BomaASG12913_complete:A_BomaASG_c29999_g1_i2
100bp
3237 O_BomaASG12914_5prime_partial:A_BomaASG_c29999_g1_i3
1651bp
LOW_QUALITY_PROTEIN:_protein_polybromo-1_[Bombyx_mori]
GO:0000228 C nuclear chromosome
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007067 P mitotic cell cycle
GO:0008285 P negative regulation of cell population proliferation
GO:0016568 P chromatin organization
GO:0090544 C SWI/SNF superfamily-type complex
3238 O_BomaASG12915_complete:A_BomaASG_c29999_g1_i3
126bp
3239 O_BomaASG12916_complete:A_BomaASG_c29999_g1_i3
100bp
3240 O_BomaASG12917_complete:A_BomaASG_c29999_g1_i4
1716bp
LOW_QUALITY_PROTEIN:_protein_polybromo-1_[Bombyx_mori]
GO:0000228 C nuclear chromosome
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007067 P mitotic cell cycle
GO:0008285 P negative regulation of cell population proliferation
GO:0016568 P chromatin organization
GO:0090544 C SWI/SNF superfamily-type complex
previous next from show/32735

- SilkBase 1999-2023 -