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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2251 O_BomaASG12026_internal:A_BomaASG_c29463_g1_i1
232bp
probable_multidrug_resistance-associated_protein_lethal(2)03659_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0006810 P transport
GO:0007275 P multicellular organism development
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0055085 P transmembrane transport
2252 O_BomaASG12027_5prime_partial:A_BomaASG_c29463_g1_i1
130bp
2253 O_BomaASG12028_internal:A_BomaASG_c29463_g1_i2
122bp
probable_multidrug_resistance-associated_protein_lethal(2)03659_[Bombyx_mori]
2254 O_BomaASG12029_internal:A_BomaASG_c29463_g1_i2
122bp
2255 O_BomaASG1202_internal:A_BomaASG_c8556_g1_i1
164bp
crossover_junction_endonuclease_MUS81_[Bombyx_mori]
GO:0000711 P meiotic DNA repair synthesis
GO:0000712 P resolution of meiotic recombination intermediates
GO:0000724 P double-strand break repair via homologous recombination
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0003677 F DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006259 P DNA metabolic process
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007131 P reciprocal meiotic recombination
GO:0008821 F crossover junction endodeoxyribonuclease activity
GO:0016787 F hydrolase activity
GO:0031573 P mitotic intra-S DNA damage checkpoint signaling
GO:0033314 P mitotic DNA replication checkpoint signaling
GO:0046872 F metal ion binding
GO:0048476 C Holliday junction resolvase complex
GO:0051321 P meiotic cell cycle
2256 O_BomaASG12030_internal:A_BomaASG_c29463_g1_i3
245bp
probable_multidrug_resistance-associated_protein_lethal(2)03659_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0006810 P transport
GO:0007275 P multicellular organism development
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0055085 P transmembrane transport
2257 O_BomaASG12031_5prime_partial:A_BomaASG_c29463_g1_i3
130bp
2258 O_BomaASG12032_5prime_partial:A_BomaASG_c29467_g1_i1
199bp
thioredoxin_domain-containing_protein_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0045454 P cell redox homeostasis
2259 O_BomaASG12033_5prime_partial:A_BomaASG_c29467_g1_i2
307bp
thioredoxin_domain-containing_protein_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0045454 P cell redox homeostasis
2260 O_BomaASG12034_5prime_partial:A_BomaASG_c29467_g1_i2
143bp
2261 O_BomaASG12035_5prime_partial:A_BomaASG_c29469_g2_i1
141bp
ATP-dependent_helicase_[Bombyx_mori]
GO:0000002 P mitochondrial genome maintenance
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0000723 P telomere maintenance
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005657 C replication fork
GO:0005739 C mitochondrion
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0010521 F telomerase inhibitor activity
GO:0016787 F hydrolase activity
GO:0032211 P negative regulation of telomere maintenance via telomerase
GO:0032508 P DNA duplex unwinding
GO:0043141 F 5'-3' DNA helicase activity
GO:0044806 P G-quadruplex DNA unwinding
GO:0051276 P chromosome organization
GO:0051974 P negative regulation of telomerase activity
2262 O_BomaASG12036_internal:A_BomaASG_c29470_g1_i1
346bp
MAU2_chromatid_cohesion_factor_homolog_isoform_X1_[Bombyx_mori]
GO:0000785 C chromatin
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007067 P mitotic cell cycle
GO:0032116 C SMC loading complex
GO:0034088 P maintenance of mitotic sister chromatid cohesion
GO:0051301 P cell division
2263 O_BomaASG12037_internal:A_BomaASG_c29470_g1_i2
340bp
MAU2_chromatid_cohesion_factor_homolog_isoform_X2_[Bombyx_mori]
GO:0000785 C chromatin
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007067 P mitotic cell cycle
GO:0032116 C SMC loading complex
GO:0034088 P maintenance of mitotic sister chromatid cohesion
GO:0051301 P cell division
2264 O_BomaASG12038_internal:A_BomaASG_c29471_g1_i1
195bp
glycosaminoglycan_xylosylkinase_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0005524 F ATP binding
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0046872 F metal ion binding
2265 O_BomaASG12039_3prime_partial:A_BomaASG_c29471_g1_i2
186bp
glycosaminoglycan_xylosylkinase_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0005524 F ATP binding
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0046872 F metal ion binding
2266 O_BomaASG1203_internal:A_BomaASG_c8579_g1_i1
109bp
2267 O_BomaASG12040_internal:A_BomaASG_c29471_g1_i3
274bp
glycosaminoglycan_xylosylkinase_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0005524 F ATP binding
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0046872 F metal ion binding
2268 O_BomaASG12041_complete:A_BomaASG_c29472_g1_i1
466bp
serine_hydroxymethyltransferase_isoform_X1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004372 F glycine hydroxymethyltransferase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006544 P glycine metabolic process
GO:0006563 P L-serine metabolic process
GO:0006730 P one-carbon metabolic process
GO:0016740 F transferase activity
GO:0030170 F pyridoxal phosphate binding
GO:0035999 P tetrahydrofolate interconversion
GO:0046653 P tetrahydrofolate metabolic process
GO:0051289 P protein homotetramerization
2269 O_BomaASG12042_complete:A_BomaASG_c29472_g1_i1
115bp
Uncharacterised_protein_[Vibrio_cholerae]
2270 O_BomaASG12043_complete:A_BomaASG_c29472_g1_i2
517bp
serine_hydroxymethyltransferase_isoform_X1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004372 F glycine hydroxymethyltransferase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006544 P glycine metabolic process
GO:0006563 P L-serine metabolic process
GO:0006730 P one-carbon metabolic process
GO:0016740 F transferase activity
GO:0030170 F pyridoxal phosphate binding
GO:0035999 P tetrahydrofolate interconversion
GO:0046653 P tetrahydrofolate metabolic process
GO:0051289 P protein homotetramerization
2271 O_BomaASG12044_complete:A_BomaASG_c29472_g1_i2
115bp
Uncharacterised_protein_[Vibrio_cholerae]
2272 O_BomaASG12045_complete:A_BomaASG_c29472_g1_i3
466bp
serine_hydroxymethyltransferase_isoform_X1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004372 F glycine hydroxymethyltransferase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006544 P glycine metabolic process
GO:0006563 P L-serine metabolic process
GO:0006730 P one-carbon metabolic process
GO:0016740 F transferase activity
GO:0030170 F pyridoxal phosphate binding
GO:0035999 P tetrahydrofolate interconversion
GO:0046653 P tetrahydrofolate metabolic process
GO:0051289 P protein homotetramerization
2273 O_BomaASG12046_complete:A_BomaASG_c29472_g1_i3
115bp
Uncharacterised_protein_[Vibrio_cholerae]
2274 O_BomaASG12047_internal:A_BomaASG_c29475_g1_i1
291bp
THO_complex_subunit_1_[Bombyx_mori]
GO:0000018 P regulation of DNA recombination
GO:0000346 C transcription export complex
GO:0000347 C THO complex
GO:0000445 C THO complex part of transcription export complex
GO:0000781 C chromosome, telomeric region
GO:0000784 C chromosome, telomeric region
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0006915 P apoptotic process
GO:0007165 P signal transduction
GO:0008380 P RNA splicing
GO:0016363 C nuclear matrix
GO:0016607 C nuclear speck
GO:0031297 P replication fork processing
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0032786 P positive regulation of DNA-templated transcription, elongation
GO:0042981 P regulation of apoptotic process
GO:0045171 C intercellular bridge
GO:0046784 P viral mRNA export from host cell nucleus
GO:0048297 P negative regulation of isotype switching to IgA isotypes
GO:0051028 P mRNA transport
GO:2000002 P negative regulation of DNA damage checkpoint
2275 O_BomaASG12048_3prime_partial:A_BomaASG_c29476_g1_i1
195bp
PREDICTED:_uncharacterized_protein_LOC105389752_[Plutella_xylostella]
GO:0046872 F metal ion binding
2276 O_BomaASG12049_internal:A_BomaASG_c29477_g1_i1
244bp
zinc_finger_MYM-type_protein_4_[Bombyx_mori]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007010 P cytoskeleton organization
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0022604 P regulation of cell morphogenesis
GO:0046872 F metal ion binding
2277 O_BomaASG1204_internal:A_BomaASG_c8582_g1_i1
107bp
ribosomal_protein_S30_[Bombyx_mori]
2278 O_BomaASG12050_5prime_partial:A_BomaASG_c29477_g1_i1
104bp
2279 O_BomaASG12051_5prime_partial:A_BomaASG_c29478_g1_i1
228bp
uncharacterized_protein_LOC101744460_isoform_X1_[Bombyx_mori]
2280 O_BomaASG12052_5prime_partial:A_BomaASG_c29478_g1_i2
672bp
uncharacterized_protein_LOC101744460_isoform_X1_[Bombyx_mori]
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