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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
9991 O_BomoMSG18994_complete:A_BomoMSG_c26315_g1_i2
562bp
 putative_phospholipase_B-like_2_[Bombyx_mori]
GO:0005764 C lysosome
GO:0006629 P lipid metabolic process
GO:0016042 P lipid catabolic process
GO:0016787 F hydrolase activity
GO:0043202 C lysosomal lumen
GO:0070062 C extracellular exosome
9992 O_BomoMSG18995_complete:A_BomoMSG_c26316_g1_i1
891bp
 nucleosomal_histone_kinase_1_[Bombyx_mori]
GO:0000070 P mitotic sister chromatid segregation
GO:0000166 F nucleotide binding
GO:0000785 C chromatin
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0007052 P mitotic spindle organization
GO:0007067 P mitotic cell cycle
GO:0007126 P meiotic cell cycle
GO:0007130 P synaptonemal complex assembly
GO:0007143 P female meiotic nuclear division
GO:0008360 P regulation of cell shape
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016568 P chromatin organization
GO:0016572 P histone phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0018107 P peptidyl-threonine phosphorylation
GO:0022008 P neurogenesis
GO:0030717 P oocyte karyosome formation
GO:0035184 F histone threonine kinase activity
GO:0035405 P histone-threonine phosphorylation
GO:0036098 P male germ-line stem cell population maintenance
GO:0036099 P female germ-line stem cell population maintenance
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0097150 P neuronal stem cell population maintenance
GO:2001020 P regulation of response to DNA damage stimulus
9993 O_BomoMSG18996_complete:A_BomoMSG_c26316_g1_i1
135bp
9994 O_BomoMSG18997_complete:A_BomoMSG_c26316_g1_i1
123bp
9995 O_BomoMSG18998_complete:A_BomoMSG_c26317_g1_i1
130bp
 PREDICTED:_uncharacterized_protein_LOC106101553_isoform_X1_[Papilio_polytes]
9996 O_BomoMSG18999_complete:A_BomoMSG_c26319_g1_i1
293bp
 ras-related_protein_Rab-40C_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0019003 F GDP binding
GO:0035556 P intracellular signal transduction
GO:0048471 C perinuclear region of cytoplasm
9997 O_BomoMSG1899_internal:A_BomoMSG_c9349_g1_i1
113bp
9998 O_BomoMSG189_internal:A_BomoMSG_c811_g1_i1
127bp
 shootin-1_[Bombyx_mori]
9999 O_BomoMSG18_internal:A_BomoMSG_c112_g1_i1
165bp
 LOW_QUALITY_PROTEIN:_neuroblastoma-amplified_sequence_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0005783 C endoplasmic reticulum
GO:0006810 P transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0015031 P protein transport
GO:0043009 P chordate embryonic development
GO:2000623 P negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
10000 O_BomoMSG19000_internal:A_BomoMSG_c26320_g1_i1
238bp
 Copia_protein_[Ooceraea_biroi]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
10001 O_BomoMSG19001_internal:A_BomoMSG_c26320_g1_i2
252bp
 gag-pol_polyprotein_[Lasius_niger]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004190 F aspartic-type endopeptidase activity
GO:0005524 F ATP binding
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
10002 O_BomoMSG19002_internal:A_BomoMSG_c26320_g1_i3
152bp
 gag-pol_polyprotein_[Lasius_niger]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
10003 O_BomoMSG19003_internal:A_BomoMSG_c26320_g1_i4
627bp
 integrase_core_domain_protein,_partial_[Lasius_niger]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
10004 O_BomoMSG19004_complete:A_BomoMSG_c26321_g1_i1
397bp
 E3_ubiquitin-protein_ligase_RNF13_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005637 C nuclear inner membrane
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031902 C late endosome membrane
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
10005 O_BomoMSG19005_complete:A_BomoMSG_c26321_g1_i1
205bp
10006 O_BomoMSG19006_complete:A_BomoMSG_c26321_g1_i2
397bp
 E3_ubiquitin-protein_ligase_RNF13_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005637 C nuclear inner membrane
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031902 C late endosome membrane
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
10007 O_BomoMSG19007_complete:A_BomoMSG_c26321_g1_i2
205bp
10008 O_BomoMSG19008_complete:A_BomoMSG_c26322_g1_i1
210bp
 PREDICTED:_ras-related_protein_Rab-21_[Amyelois_transitella]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005925 C focal adhesion
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008089 P anterograde axonal transport
GO:0008152 P metabolic process
GO:0009898 C cytoplasmic side of plasma membrane
GO:0012506 C vesicle membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017157 P regulation of exocytosis
GO:0019003 F GDP binding
GO:0030100 P regulation of endocytosis
GO:0030516 P regulation of axon extension
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0032154 C cleavage furrow
GO:0032580 C Golgi cisterna membrane
GO:0043005 C neuron projection
GO:0048260 P positive regulation of receptor-mediated endocytosis
GO:0050775 P positive regulation of dendrite morphogenesis
GO:0070062 C extracellular exosome
GO:0098559 C cytoplasmic side of early endosome membrane
GO:1904115 C axon cytoplasm
GO:2000643 P positive regulation of early endosome to late endosome transport
10009 O_BomoMSG19009_complete:A_BomoMSG_c26322_g1_i2
221bp
 PREDICTED:_ras-related_protein_Rab-21_[Amyelois_transitella]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005925 C focal adhesion
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008089 P anterograde axonal transport
GO:0008152 P metabolic process
GO:0009898 C cytoplasmic side of plasma membrane
GO:0012506 C vesicle membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017157 P regulation of exocytosis
GO:0019003 F GDP binding
GO:0030100 P regulation of endocytosis
GO:0030516 P regulation of axon extension
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0032154 C cleavage furrow
GO:0032580 C Golgi cisterna membrane
GO:0043005 C neuron projection
GO:0048260 P positive regulation of receptor-mediated endocytosis
GO:0050775 P positive regulation of dendrite morphogenesis
GO:0070062 C extracellular exosome
GO:0098559 C cytoplasmic side of early endosome membrane
GO:1904115 C axon cytoplasm
GO:2000643 P positive regulation of early endosome to late endosome transport
10010 O_BomoMSG1900_internal:A_BomoMSG_c9350_g1_i1
287bp
 probable_ATP-dependent_RNA_helicase_DHX34_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006396 P RNA processing
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:2000623 P negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
10011 O_BomoMSG19010_5prime_partial:A_BomoMSG_c26322_g1_i3
118bp
 PREDICTED:_ras-related_protein_Rab-21_[Amyelois_transitella]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005925 C focal adhesion
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008089 P anterograde axonal transport
GO:0008152 P metabolic process
GO:0009898 C cytoplasmic side of plasma membrane
GO:0012506 C vesicle membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017157 P regulation of exocytosis
GO:0019003 F GDP binding
GO:0030100 P regulation of endocytosis
GO:0030516 P regulation of axon extension
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0032154 C cleavage furrow
GO:0032580 C Golgi cisterna membrane
GO:0043005 C neuron projection
GO:0048260 P positive regulation of receptor-mediated endocytosis
GO:0050775 P positive regulation of dendrite morphogenesis
GO:0070062 C extracellular exosome
GO:0098559 C cytoplasmic side of early endosome membrane
GO:1904115 C axon cytoplasm
GO:2000643 P positive regulation of early endosome to late endosome transport
10012 O_BomoMSG19011_internal:A_BomoMSG_c26323_g1_i1
137bp
 formin-binding_protein_4_[Bombyx_mori]
10013 O_BomoMSG19012_3prime_partial:A_BomoMSG_c26323_g1_i2
539bp
 formin-binding_protein_4_[Bombyx_mori]
10014 O_BomoMSG19013_complete:A_BomoMSG_c26323_g1_i2
175bp
10015 O_BomoMSG19014_internal:A_BomoMSG_c26323_g1_i3
217bp
 formin-binding_protein_4_[Bombyx_mori]
10016 O_BomoMSG19015_3prime_partial:A_BomoMSG_c26323_g1_i3
148bp
10017 O_BomoMSG19016_internal:A_BomoMSG_c26323_g1_i4
155bp
 formin-binding_protein_4_[Bombyx_mori]
10018 O_BomoMSG19017_5prime_partial:A_BomoMSG_c26325_g1_i1
839bp
 putative_uncharacterized_protein_DDB_G0282133_[Bombyx_mori]
10019 O_BomoMSG19018_complete:A_BomoMSG_c26325_g1_i2
1495bp
 putative_uncharacterized_protein_DDB_G0282133_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
10020 O_BomoMSG19019_internal:A_BomoMSG_c26326_g1_i1
210bp
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