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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
931 O_BomoMSG10839_complete:A_BomoMSG_c22954_g1_i1
144bp
932 O_BomoMSG1083_internal:A_BomoMSG_c5103_g1_i1
102bp
 progestin_and_adipoQ_receptor_family_member_3_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0001933 P negative regulation of protein phosphorylation
GO:0004872 F signaling receptor activity
GO:0005794 C Golgi apparatus
GO:0010977 P negative regulation of neuron projection development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0033137 P negative regulation of peptidyl-serine phosphorylation
GO:0034067 P protein localization to Golgi apparatus
GO:0043407 P negative regulation of MAP kinase activity
933 O_BomoMSG10840_complete:A_BomoMSG_c22954_g1_i1
103bp
934 O_BomoMSG10841_internal:A_BomoMSG_c22954_g1_i2
215bp
 zinc_finger_protein_hangover-like,_partial_[Bombyx_mori]
935 O_BomoMSG10842_complete:A_BomoMSG_c22954_g1_i2
144bp
936 O_BomoMSG10843_complete:A_BomoMSG_c22954_g1_i2
103bp
937 O_BomoMSG10844_5prime_partial:A_BomoMSG_c22955_g1_i1
208bp
 estradiol_17-beta-dehydrogenase_11_isoform_X2_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
938 O_BomoMSG10845_complete:A_BomoMSG_c22955_g1_i1
126bp
939 O_BomoMSG10846_complete:A_BomoMSG_c22955_g1_i2
361bp
 estradiol_17-beta-dehydrogenase_11_isoform_X1_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
940 O_BomoMSG10847_3prime_partial:A_BomoMSG_c22955_g1_i2
140bp
941 O_BomoMSG10848_complete:A_BomoMSG_c22955_g1_i2
126bp
942 O_BomoMSG10849_5prime_partial:A_BomoMSG_c22957_g1_i1
329bp
 Rad51_homolog_[Bombyx_mori]
GO:0000150 F DNA strand exchange activity
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000400 F four-way junction DNA binding
GO:0000722 P telomere maintenance via recombination
GO:0000724 P double-strand break repair via homologous recombination
GO:0000730 P DNA recombinase assembly
GO:0000784 C chromosome, telomeric region
GO:0000785 C chromatin
GO:0000793 C condensed chromosome
GO:0000794 C condensed nuclear chromosome
GO:0000800 C lateral element
GO:0001932 P regulation of protein phosphorylation
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004520 F endodeoxyribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006259 P DNA metabolic process
GO:0006268 P DNA unwinding involved in DNA replication
GO:0006281 P DNA repair
GO:0006312 P mitotic recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007126 P meiotic cell cycle
GO:0007131 P reciprocal meiotic recombination
GO:0008022 F protein C-terminus binding
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0010212 P response to ionizing radiation
GO:0010569 P regulation of double-strand break repair via homologous recombination
GO:0010833 P telomere maintenance via telomere lengthening
GO:0016605 C PML body
GO:0031297 P replication fork processing
GO:0032200 P telomere organization
GO:0035861 C site of double-strand break
GO:0042148 P strand invasion
GO:0042802 F identical protein binding
GO:0043142 F single-stranded DNA helicase activity
GO:0048471 C perinuclear region of cytoplasm
GO:0051106 P positive regulation of DNA ligation
GO:0051260 P protein homooligomerization
GO:0070182 F DNA polymerase binding
GO:0070192 P chromosome organization involved in meiotic cell cycle
GO:0071312 P cellular response to alkaloid
GO:0071479 P cellular response to ionizing radiation
GO:0072711 P cellular response to hydroxyurea
GO:0072757 P cellular response to camptothecin
GO:1990414 P replication-born double-strand break repair via sister chromatid exchange
GO:1990426 P mitotic recombination-dependent replication fork processing
943 O_BomoMSG1084_internal:A_BomoMSG_c5103_g1_i1
101bp
944 O_BomoMSG10850_complete:A_BomoMSG_c22957_g1_i2
339bp
 Rad51_homolog_[Bombyx_mori]
GO:0000150 F DNA strand exchange activity
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000400 F four-way junction DNA binding
GO:0000722 P telomere maintenance via recombination
GO:0000724 P double-strand break repair via homologous recombination
GO:0000730 P DNA recombinase assembly
GO:0000784 C chromosome, telomeric region
GO:0000785 C chromatin
GO:0000793 C condensed chromosome
GO:0000794 C condensed nuclear chromosome
GO:0000800 C lateral element
GO:0001932 P regulation of protein phosphorylation
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004520 F endodeoxyribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006259 P DNA metabolic process
GO:0006268 P DNA unwinding involved in DNA replication
GO:0006281 P DNA repair
GO:0006312 P mitotic recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007126 P meiotic cell cycle
GO:0007131 P reciprocal meiotic recombination
GO:0008022 F protein C-terminus binding
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0010212 P response to ionizing radiation
GO:0010569 P regulation of double-strand break repair via homologous recombination
GO:0010833 P telomere maintenance via telomere lengthening
GO:0016605 C PML body
GO:0031297 P replication fork processing
GO:0032200 P telomere organization
GO:0035861 C site of double-strand break
GO:0042148 P strand invasion
GO:0042802 F identical protein binding
GO:0043142 F single-stranded DNA helicase activity
GO:0048471 C perinuclear region of cytoplasm
GO:0051106 P positive regulation of DNA ligation
GO:0051260 P protein homooligomerization
GO:0070182 F DNA polymerase binding
GO:0070192 P chromosome organization involved in meiotic cell cycle
GO:0071312 P cellular response to alkaloid
GO:0071479 P cellular response to ionizing radiation
GO:0072711 P cellular response to hydroxyurea
GO:0072757 P cellular response to camptothecin
GO:1990414 P replication-born double-strand break repair via sister chromatid exchange
GO:1990426 P mitotic recombination-dependent replication fork processing
945 O_BomoMSG10851_5prime_partial:A_BomoMSG_c22958_g1_i1
112bp
946 O_BomoMSG10852_5prime_partial:A_BomoMSG_c22960_g1_i1
303bp
 PREDICTED:_uncharacterized_protein_LOC106718363_[Papilio_machaon]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0006313 P transposition, DNA-mediated
GO:0008270 F zinc ion binding
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0046872 F metal ion binding
947 O_BomoMSG10853_complete:A_BomoMSG_c22960_g1_i1
154bp
948 O_BomoMSG10854_5prime_partial:A_BomoMSG_c22961_g1_i1
211bp
 uncharacterized_protein_LOC101735752_[Bombyx_mori]
GO:0005737 C cytoplasm
949 O_BomoMSG10855_5prime_partial:A_BomoMSG_c22961_g1_i1
150bp
950 O_BomoMSG10856_3prime_partial:A_BomoMSG_c22962_g1_i1
106bp
 E3_ubiquitin-protein_ligase_RNF180-like_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030534 P adult behavior
GO:0031227 C intrinsic component of endoplasmic reticulum membrane
GO:0031398 P positive regulation of protein ubiquitination
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0042415 P norepinephrine metabolic process
GO:0042428 P serotonin metabolic process
GO:0046872 F metal ion binding
GO:0050790 P regulation of catalytic activity
GO:0061630 F ubiquitin protein ligase activity
GO:1901360 P organic cyclic compound metabolic process
951 O_BomoMSG10857_5prime_partial:A_BomoMSG_c22964_g1_i1
144bp
 PREDICTED:_uncharacterized_protein_LOC106113336,_partial_[Papilio_xuthus]
952 O_BomoMSG10858_3prime_partial:A_BomoMSG_c22964_g1_i1
126bp
 hypothetical_protein_[Piscirickettsia_salmonis]
953 O_BomoMSG10859_complete:A_BomoMSG_c22964_g1_i1
113bp
954 O_BomoMSG1085_internal:A_BomoMSG_c5104_g1_i1
118bp
 nesprin-1_isoform_X2_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
955 O_BomoMSG10860_3prime_partial:A_BomoMSG_c22964_g1_i1
106bp
956 O_BomoMSG10861_5prime_partial:A_BomoMSG_c22964_g1_i2
204bp
 PREDICTED:_uncharacterized_protein_LOC106119888_[Papilio_xuthus]
957 O_BomoMSG10862_3prime_partial:A_BomoMSG_c22964_g1_i2
126bp
 hypothetical_protein_[Piscirickettsia_salmonis]
958 O_BomoMSG10863_complete:A_BomoMSG_c22964_g1_i2
119bp
959 O_BomoMSG10864_complete:A_BomoMSG_c22964_g1_i2
113bp
960 O_BomoMSG10865_internal:A_BomoMSG_c22964_g2_i1
259bp
 hypothetical_protein_[Piscirickettsia_salmonis]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
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