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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8281 O_BomoMSG17454_3prime_partial:A_BomoMSG_c25833_g1_i3
121bp
8282 O_BomoMSG17455_5prime_partial:A_BomoMSG_c25833_g1_i3
100bp
8283 O_BomoMSG17456_3prime_partial:A_BomoMSG_c25834_g1_i3
327bp
 transcription_factor_AP-4_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006461 P protein-containing complex assembly
GO:0006978 P DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator
GO:0008285 P negative regulation of cell population proliferation
GO:0010629 P negative regulation of gene expression
GO:0017053 C transcription repressor complex
GO:0042803 F protein homodimerization activity
GO:0042826 F histone deacetylase binding
GO:0043065 P positive regulation of apoptotic process
GO:0043392 P negative regulation of DNA binding
GO:0043565 F sequence-specific DNA binding
GO:0043922 P negative regulation by host of viral transcription
GO:0043923 P positive regulation by host of viral transcription
GO:0044212 F transcription cis-regulatory region binding
GO:0045736 P negative regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0070888 F E-box binding
GO:0071157 P regulation of cell cycle
GO:0071549 P cellular response to dexamethasone stimulus
GO:2001269 P positive regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway
8284 O_BomoMSG17457_5prime_partial:A_BomoMSG_c25835_g1_i1
567bp
 protein_ECT2_isoform_X2_[Bombyx_mori]
GO:0000902 P cell morphogenesis
GO:0000910 P cytokinesis
GO:0004871 F obsolete signal transducer activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005911 C cell-cell junction
GO:0005923 C bicellular tight junction
GO:0006810 P transport
GO:0007049 P cell cycle
GO:0007399 P nervous system development
GO:0015031 P protein transport
GO:0017048 F small GTPase binding
GO:0030054 C cell junction
GO:0030154 P cell differentiation
GO:0030496 C midbody
GO:0032147 P activation of protein kinase activity
GO:0032154 C cleavage furrow
GO:0032467 P positive regulation of cytokinesis
GO:0035023 P regulation of Rho protein signal transduction
GO:0035556 P intracellular signal transduction
GO:0042307 P positive regulation of protein import into nucleus
GO:0042803 F protein homodimerization activity
GO:0043065 P positive regulation of apoptotic process
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043547 P positive regulation of GTPase activity
GO:0045666 P positive regulation of neuron differentiation
GO:0045859 P regulation of protein kinase activity
GO:0051260 P protein homooligomerization
GO:0051301 P cell division
GO:0051988 P regulation of attachment of spindle microtubules to kinetochore
GO:0070301 P cellular response to hydrogen peroxide
GO:0070830 P bicellular tight junction assembly
GO:0071277 P cellular response to calcium ion
GO:0071479 P cellular response to ionizing radiation
GO:0072686 C mitotic spindle
GO:0090630 P activation of GTPase activity
GO:0097149 C centralspindlin complex
8285 O_BomoMSG17458_5prime_partial:A_BomoMSG_c25835_g1_i1
125bp
8286 O_BomoMSG17459_5prime_partial:A_BomoMSG_c25835_g1_i2
544bp
 protein_ECT2_isoform_X3_[Bombyx_mori]
GO:0000902 P cell morphogenesis
GO:0000910 P cytokinesis
GO:0004871 F obsolete signal transducer activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005911 C cell-cell junction
GO:0005923 C bicellular tight junction
GO:0006810 P transport
GO:0007049 P cell cycle
GO:0007399 P nervous system development
GO:0015031 P protein transport
GO:0017048 F small GTPase binding
GO:0030054 C cell junction
GO:0030154 P cell differentiation
GO:0030496 C midbody
GO:0032147 P activation of protein kinase activity
GO:0032154 C cleavage furrow
GO:0032467 P positive regulation of cytokinesis
GO:0035023 P regulation of Rho protein signal transduction
GO:0035556 P intracellular signal transduction
GO:0042307 P positive regulation of protein import into nucleus
GO:0042803 F protein homodimerization activity
GO:0043065 P positive regulation of apoptotic process
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043547 P positive regulation of GTPase activity
GO:0045666 P positive regulation of neuron differentiation
GO:0045859 P regulation of protein kinase activity
GO:0051260 P protein homooligomerization
GO:0051301 P cell division
GO:0051988 P regulation of attachment of spindle microtubules to kinetochore
GO:0070301 P cellular response to hydrogen peroxide
GO:0070830 P bicellular tight junction assembly
GO:0071277 P cellular response to calcium ion
GO:0071479 P cellular response to ionizing radiation
GO:0072686 C mitotic spindle
GO:0090630 P activation of GTPase activity
GO:0097149 C centralspindlin complex
8287 O_BomoMSG1745_internal:A_BomoMSG_c8436_g1_i1
186bp
 Uncharacterized_protein_OBRU01_02683_[Operophtera_brumata]
8288 O_BomoMSG17460_5prime_partial:A_BomoMSG_c25835_g1_i2
102bp
8289 O_BomoMSG17461_complete:A_BomoMSG_c25837_g1_i1
336bp
 transcription_factor_E2F7_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001047 F core promoter sequence-specific DNA binding
GO:0001946 P lymphangiogenesis
GO:0002040 P sprouting angiogenesis
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0008285 P negative regulation of cell population proliferation
GO:0030330 P DNA damage response, signal transduction by p53 class mediator
GO:0032466 P negative regulation of cytokinesis
GO:0032877 P positive regulation of DNA endoreduplication
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0060718 P chorionic trophoblast cell differentiation
GO:0070365 P hepatocyte differentiation
GO:0071930 P negative regulation of transcription involved in G1/S transition of mitotic cell cycle
GO:2000134 P negative regulation of G1/S transition of mitotic cell cycle
8290 O_BomoMSG17462_complete:A_BomoMSG_c25837_g1_i2
336bp
 transcription_factor_E2F7_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001047 F core promoter sequence-specific DNA binding
GO:0001946 P lymphangiogenesis
GO:0002040 P sprouting angiogenesis
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0008285 P negative regulation of cell population proliferation
GO:0030330 P DNA damage response, signal transduction by p53 class mediator
GO:0032466 P negative regulation of cytokinesis
GO:0032877 P positive regulation of DNA endoreduplication
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0060718 P chorionic trophoblast cell differentiation
GO:0070365 P hepatocyte differentiation
GO:0071930 P negative regulation of transcription involved in G1/S transition of mitotic cell cycle
GO:2000134 P negative regulation of G1/S transition of mitotic cell cycle
8291 O_BomoMSG17463_internal:A_BomoMSG_c25838_g1_i1
187bp
 probable_peroxisomal_acyl-coenzyme_A_oxidase_1_[Bombyx_mori]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0003997 F acyl-CoA oxidase activity
GO:0005777 C peroxisome
GO:0006091 P generation of precursor metabolites and energy
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0006693 P prostaglandin metabolic process
GO:0008152 P metabolic process
GO:0009055 F electron transfer activity
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0019395 P fatty acid oxidation
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0033540 P fatty acid beta-oxidation using acyl-CoA oxidase
GO:0050660 F flavin adenine dinucleotide binding
GO:0052890 F oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
8292 O_BomoMSG17464_internal:A_BomoMSG_c25838_g1_i2
144bp
 probable_peroxisomal_acyl-coenzyme_A_oxidase_1_[Bombyx_mori]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0003997 F acyl-CoA oxidase activity
GO:0005777 C peroxisome
GO:0006091 P generation of precursor metabolites and energy
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0006693 P prostaglandin metabolic process
GO:0008152 P metabolic process
GO:0009055 F electron transfer activity
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0019395 P fatty acid oxidation
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0033540 P fatty acid beta-oxidation using acyl-CoA oxidase
GO:0050660 F flavin adenine dinucleotide binding
GO:0052890 F oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
8293 O_BomoMSG17465_internal:A_BomoMSG_c25839_g1_i1
185bp
 lipoyltransferase_1,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006464 P cellular protein modification process
GO:0006629 P lipid metabolic process
GO:0009249 P protein lipoylation
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0046487 P glyoxylate metabolic process
8294 O_BomoMSG17466_complete:A_BomoMSG_c25839_g1_i2
416bp
 lipoyltransferase_1,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0006464 P cellular protein modification process
GO:0008150 P biological_process
GO:0009249 P protein lipoylation
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
8295 O_BomoMSG17467_complete:A_BomoMSG_c25839_g1_i3
416bp
 lipoyltransferase_1,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0006464 P cellular protein modification process
GO:0008150 P biological_process
GO:0009249 P protein lipoylation
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
8296 O_BomoMSG17468_3prime_partial:A_BomoMSG_c25839_g1_i4
225bp
 lipoyltransferase_1,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0006464 P cellular protein modification process
GO:0008150 P biological_process
GO:0009249 P protein lipoylation
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
8297 O_BomoMSG17469_complete:A_BomoMSG_c25839_g1_i5
420bp
 lipoyltransferase_1,_mitochondrial_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0006464 P cellular protein modification process
GO:0008150 P biological_process
GO:0009249 P protein lipoylation
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
8298 O_BomoMSG1746_internal:A_BomoMSG_c8450_g1_i1
308bp
 PREDICTED:_polypeptide_N-acetylgalactosaminyltransferase_2-like_[Amyelois_transitella]
GO:0000139 C Golgi membrane
GO:0004653 F polypeptide N-acetylgalactosaminyltransferase activity
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0006486 P protein glycosylation
GO:0009312 P oligosaccharide biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030246 F carbohydrate binding
GO:0046872 F metal ion binding
8299 O_BomoMSG17470_complete:A_BomoMSG_c25839_g1_i6
416bp
 lipoyltransferase_1,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0006464 P cellular protein modification process
GO:0008150 P biological_process
GO:0009249 P protein lipoylation
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
8300 O_BomoMSG17471_complete:A_BomoMSG_c25840_g1_i1
276bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101743327_[Bombyx_mori]
8301 O_BomoMSG17472_complete:A_BomoMSG_c25840_g1_i1
109bp
8302 O_BomoMSG17473_complete:A_BomoMSG_c25840_g1_i2
276bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101743327_[Bombyx_mori]
8303 O_BomoMSG17474_complete:A_BomoMSG_c25840_g1_i2
109bp
8304 O_BomoMSG17475_5prime_partial:A_BomoMSG_c25841_g1_i3
234bp
 protein_GDAP2_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
8305 O_BomoMSG17476_complete:A_BomoMSG_c25841_g1_i5
208bp
 Protein_GDAP2-like_[Papilio_xuthus]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
8306 O_BomoMSG17477_complete:A_BomoMSG_c25841_g1_i6
208bp
 Protein_GDAP2-like_[Papilio_xuthus]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
8307 O_BomoMSG17478_complete:A_BomoMSG_c25841_g1_i7
208bp
 Protein_GDAP2-like_[Papilio_xuthus]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
8308 O_BomoMSG17479_internal:A_BomoMSG_c25842_g1_i1
232bp
 uncharacterized_protein_LOC101741884_[Bombyx_mori]
8309 O_BomoMSG1747_internal:A_BomoMSG_c8455_g1_i1
102bp
 carnitine_O-palmitoyltransferase_2,_mitochondrial_[Bombyx_mori]
GO:0004095 F carnitine O-palmitoyltransferase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0006810 P transport
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
8310 O_BomoMSG17480_internal:A_BomoMSG_c25842_g1_i2
210bp
 uncharacterized_protein_LOC101741884_[Bombyx_mori]
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