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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8191 O_BomoMSG17373_complete:A_BomoMSG_c25809_g1_i1
125bp
8192 O_BomoMSG17374_internal:A_BomoMSG_c25809_g1_i3
129bp
 exosome_complex_component_RRP4_[Bombyx_mori]
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000467 P exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0030307 P positive regulation of cell growth
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034475 P U4 snRNA 3'-end processing
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0071034 P CUT catabolic process
GO:0071035 P nuclear polyadenylation-dependent rRNA catabolic process
GO:0071038 P nuclear polyadenylation-dependent tRNA catabolic process
GO:0071049 P nuclear mRNA surveillance
GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing
8193 O_BomoMSG17375_internal:A_BomoMSG_c25810_g1_i1
394bp
 integrator_complex_subunit_4_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0016180 P snRNA processing
GO:0032039 C integrator complex
GO:0042795 P snRNA transcription by RNA polymerase II
8194 O_BomoMSG17376_5prime_partial:A_BomoMSG_c25810_g1_i1
123bp
8195 O_BomoMSG17377_5prime_partial:A_BomoMSG_c25810_g1_i1
110bp
8196 O_BomoMSG17378_internal:A_BomoMSG_c25810_g1_i2
260bp
 integrator_complex_subunit_4_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0016180 P snRNA processing
GO:0032039 C integrator complex
GO:0042795 P snRNA transcription by RNA polymerase II
8197 O_BomoMSG17379_5prime_partial:A_BomoMSG_c25810_g1_i2
123bp
8198 O_BomoMSG1737_complete:A_BomoMSG_c8388_g1_i1
127bp
8199 O_BomoMSG17380_5prime_partial:A_BomoMSG_c25810_g1_i2
110bp
8200 O_BomoMSG17381_5prime_partial:A_BomoMSG_c25811_g1_i1
394bp
 adenylosuccinate_synthetase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004019 F adenylosuccinate synthase activity
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0006164 P purine nucleotide biosynthetic process
GO:0016874 F ligase activity
GO:0044208 P 'de novo' AMP biosynthetic process
GO:0046872 F metal ion binding
8201 O_BomoMSG17382_complete:A_BomoMSG_c25811_g1_i2
452bp
 adenylosuccinate_synthetase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004019 F adenylosuccinate synthase activity
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0006164 P purine nucleotide biosynthetic process
GO:0016874 F ligase activity
GO:0044208 P 'de novo' AMP biosynthetic process
GO:0046872 F metal ion binding
8202 O_BomoMSG17383_5prime_partial:A_BomoMSG_c25811_g2_i1
442bp
 metal_transporter_CNNM4_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0010960 P magnesium ion homeostasis
GO:0015693 P magnesium ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
8203 O_BomoMSG17384_complete:A_BomoMSG_c25812_g2_i1
1027bp
 chromatin-remodeling_complex_ATPase_chain_Iswi_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000790 C chromatin
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005700 C polytene chromosome
GO:0006325 P chromatin organization
GO:0006333 P chromatin assembly or disassembly
GO:0006334 P nucleosome assembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007517 P muscle organ development
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008134 F transcription factor binding
GO:0008623 C CHRAC
GO:0016568 P chromatin organization
GO:0016584 P nucleosome positioning
GO:0016589 C NURF complex
GO:0016590 C ACF complex
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016887 F ATP hydrolysis activity
GO:0019233 P sensory perception of pain
GO:0031010 C ISWI-type complex
GO:0031213 C RSF complex
GO:0031491 F nucleosome binding
GO:0032508 P DNA duplex unwinding
GO:0035060 C brahma complex
GO:0035063 P nuclear speck organization
GO:0035076 P ecdysone receptor-mediated signaling pathway
GO:0042752 P regulation of circadian rhythm
GO:0042766 P nucleosome mobilization
GO:0043044 P chromatin remodeling
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048813 P dendrite morphogenesis
GO:0070615 F ATP-dependent chromatin remodeler activity
8204 O_BomoMSG17385_5prime_partial:A_BomoMSG_c25813_g1_i1
370bp
 PDZ_and_LIM_domain_protein_3_isoform_X6_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0007015 P actin filament organization
GO:0007507 P heart development
GO:0008092 F cytoskeletal protein binding
GO:0008270 F zinc ion binding
GO:0008307 F structural constituent of muscle
GO:0015629 C actin cytoskeleton
GO:0030018 C Z disc
GO:0046872 F metal ion binding
8205 O_BomoMSG17386_complete:A_BomoMSG_c25813_g1_i1
116bp
8206 O_BomoMSG17387_5prime_partial:A_BomoMSG_c25813_g1_i2
187bp
 PDZ_and_LIM_domain_protein_3_isoform_X6_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0030018 C Z disc
GO:0046872 F metal ion binding
8207 O_BomoMSG17388_complete:A_BomoMSG_c25813_g1_i2
116bp
8208 O_BomoMSG17389_5prime_partial:A_BomoMSG_c25813_g1_i3
191bp
 PDZ_and_LIM_domain_protein_3_isoform_X6_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0030018 C Z disc
GO:0046872 F metal ion binding
8209 O_BomoMSG1738_complete:A_BomoMSG_c8388_g1_i2
422bp
 26S_proteasome_non-ATPase_regulatory_subunit_11_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005515 F protein binding
GO:0005838 C proteasome regulatory particle
GO:0005875 C microtubule associated complex
GO:0008541 C proteasome regulatory particle, lid subcomplex
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
8210 O_BomoMSG17390_complete:A_BomoMSG_c25813_g1_i3
116bp
8211 O_BomoMSG17391_5prime_partial:A_BomoMSG_c25814_g1_i1
168bp
 PQ-loop_repeat-containing_protein_3_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0006488 P dolichol-linked oligosaccharide biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
8212 O_BomoMSG17392_5prime_partial:A_BomoMSG_c25814_g1_i2
168bp
 PQ-loop_repeat-containing_protein_3_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0006488 P dolichol-linked oligosaccharide biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
8213 O_BomoMSG17393_complete:A_BomoMSG_c25815_g1_i1
537bp
 BTB/POZ_domain-containing_protein_17_isoform_X1_[Bombyx_mori]
GO:0005576 C extracellular region
8214 O_BomoMSG17394_complete:A_BomoMSG_c25815_g1_i1
150bp
8215 O_BomoMSG17395_5prime_partial:A_BomoMSG_c25815_g1_i2
432bp
 BTB/POZ_domain-containing_protein_17_isoform_X1_[Bombyx_mori]
GO:0005576 C extracellular region
8216 O_BomoMSG17396_complete:A_BomoMSG_c25815_g1_i2
150bp
8217 O_BomoMSG17397_5prime_partial:A_BomoMSG_c25815_g1_i3
213bp
 BTB/POZ_domain-containing_protein_17_isoform_X1_[Bombyx_mori]
8218 O_BomoMSG17398_5prime_partial:A_BomoMSG_c25815_g1_i3
137bp
8219 O_BomoMSG17399_5prime_partial:A_BomoMSG_c25816_g1_i1
146bp
 diphthamide_synthesis_protein_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008283 P cell population proliferation
GO:0017183 P peptidyl-diphthamide biosynthetic process from peptidyl-histidine
8220 O_BomoMSG1739_complete:A_BomoMSG_c8388_g1_i2
127bp
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