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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8161 O_BomoMSG17346_complete:A_BomoMSG_c25803_g1_i2
250bp
 probable_pseudouridine-5'-phosphatase_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0009117 P nucleotide metabolic process
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0042060 P wound healing
GO:0046872 F metal ion binding
GO:1990738 F pseudouridine 5'-phosphatase activity
8162 O_BomoMSG17347_complete:A_BomoMSG_c25803_g1_i2
114bp
8163 O_BomoMSG17348_5prime_partial:A_BomoMSG_c25803_g1_i3
180bp
 probable_pseudouridine-5'-phosphatase_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0009117 P nucleotide metabolic process
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0042060 P wound healing
GO:0046872 F metal ion binding
GO:1990738 F pseudouridine 5'-phosphatase activity
8164 O_BomoMSG17349_complete:A_BomoMSG_c25803_g1_i3
114bp
8165 O_BomoMSG1734_5prime_partial:A_BomoMSG_c8376_g1_i1
113bp
8166 O_BomoMSG17350_internal:A_BomoMSG_c25804_g1_i1
744bp
 ankyrin_repeat_and_LEM_domain-containing_protein_2_isoform_X2_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007084 P mitotic nuclear membrane reassembly
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0035307 P positive regulation of protein dephosphorylation
GO:0042326 P negative regulation of phosphorylation
GO:0051301 P cell division
GO:0051721 F protein phosphatase 2A binding
8167 O_BomoMSG17351_complete:A_BomoMSG_c25804_g1_i1
150bp
8168 O_BomoMSG17352_complete:A_BomoMSG_c25804_g1_i1
115bp
8169 O_BomoMSG17353_complete:A_BomoMSG_c25804_g1_i1
107bp
8170 O_BomoMSG17354_internal:A_BomoMSG_c25804_g1_i2
936bp
 ankyrin_repeat_and_LEM_domain-containing_protein_2_isoform_X2_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007084 P mitotic nuclear membrane reassembly
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0035307 P positive regulation of protein dephosphorylation
GO:0042326 P negative regulation of phosphorylation
GO:0051301 P cell division
GO:0051721 F protein phosphatase 2A binding
8171 O_BomoMSG17355_complete:A_BomoMSG_c25804_g1_i2
150bp
8172 O_BomoMSG17356_complete:A_BomoMSG_c25804_g1_i2
117bp
8173 O_BomoMSG17357_complete:A_BomoMSG_c25804_g1_i2
115bp
8174 O_BomoMSG17358_complete:A_BomoMSG_c25804_g1_i2
107bp
8175 O_BomoMSG17359_internal:A_BomoMSG_c25804_g1_i3
494bp
 ankyrin_repeat_and_LEM_domain-containing_protein_2_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007084 P mitotic nuclear membrane reassembly
GO:0008601 F protein phosphatase regulator activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0035307 P positive regulation of protein dephosphorylation
GO:0042326 P negative regulation of phosphorylation
GO:0050790 P regulation of catalytic activity
GO:0051301 P cell division
GO:0051721 F protein phosphatase 2A binding
8176 O_BomoMSG1735_internal:A_BomoMSG_c8377_g1_i1
164bp
 uncharacterized_protein_LOC101746155_isoform_X2_[Bombyx_mori]
8177 O_BomoMSG17360_complete:A_BomoMSG_c25804_g1_i3
150bp
8178 O_BomoMSG17361_complete:A_BomoMSG_c25804_g1_i3
115bp
8179 O_BomoMSG17362_3prime_partial:A_BomoMSG_c25805_g1_i2
514bp
 WD_repeat-containing_protein_59_isoform_X3_[Bombyx_mori]
GO:0032008 P positive regulation of TOR signaling
GO:0034198 P cellular response to amino acid starvation
GO:0061700 C GATOR2 complex
8180 O_BomoMSG17363_3prime_partial:A_BomoMSG_c25805_g1_i3
518bp
 WD_repeat-containing_protein_59_isoform_X1_[Bombyx_mori]
GO:0032008 P positive regulation of TOR signaling
GO:0034198 P cellular response to amino acid starvation
GO:0061700 C GATOR2 complex
8181 O_BomoMSG17364_internal:A_BomoMSG_c25805_g1_i4
453bp
 WD_repeat-containing_protein_59_isoform_X1_[Bombyx_mori]
GO:0032008 P positive regulation of TOR signaling
GO:0034198 P cellular response to amino acid starvation
GO:0061700 C GATOR2 complex
8182 O_BomoMSG17365_complete:A_BomoMSG_c25806_g1_i2
314bp
 ELMO_domain-containing_protein_2_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0016020 C membrane
GO:0043234 C protein-containing complex
GO:0043547 P positive regulation of GTPase activity
GO:0050688 P regulation of defense response to virus
8183 O_BomoMSG17366_complete:A_BomoMSG_c25807_g1_i1
455bp
 nuclear_cap-binding_protein_subunit_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000340 F RNA 7-methylguanosine cap binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006370 P 7-methylguanosine mRNA capping
GO:0006397 P mRNA processing
GO:0006810 P transport
GO:0051028 P mRNA transport
8184 O_BomoMSG17367_5prime_partial:A_BomoMSG_c25807_g1_i2
431bp
 nuclear_cap-binding_protein_subunit_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000340 F RNA 7-methylguanosine cap binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006370 P 7-methylguanosine mRNA capping
GO:0006397 P mRNA processing
GO:0006810 P transport
GO:0051028 P mRNA transport
8185 O_BomoMSG17368_complete:A_BomoMSG_c25807_g1_i3
275bp
 nuclear_cap-binding_protein_subunit_3_[Bombyx_mori]
8186 O_BomoMSG17369_complete:A_BomoMSG_c25807_g1_i4
455bp
 nuclear_cap-binding_protein_subunit_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000340 F RNA 7-methylguanosine cap binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006370 P 7-methylguanosine mRNA capping
GO:0006397 P mRNA processing
GO:0006810 P transport
GO:0051028 P mRNA transport
8187 O_BomoMSG1736_complete:A_BomoMSG_c8388_g1_i1
422bp
 26S_proteasome_non-ATPase_regulatory_subunit_11_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005515 F protein binding
GO:0005838 C proteasome regulatory particle
GO:0005875 C microtubule associated complex
GO:0008541 C proteasome regulatory particle, lid subcomplex
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
8188 O_BomoMSG17370_internal:A_BomoMSG_c25808_g1_i1
219bp
 probable_peroxisomal_acyl-coenzyme_A_oxidase_1_[Bombyx_mori]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0003997 F acyl-CoA oxidase activity
GO:0005777 C peroxisome
GO:0006091 P generation of precursor metabolites and energy
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0006693 P prostaglandin metabolic process
GO:0008152 P metabolic process
GO:0009055 F electron transfer activity
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0019395 P fatty acid oxidation
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0033540 P fatty acid beta-oxidation using acyl-CoA oxidase
GO:0050660 F flavin adenine dinucleotide binding
GO:0052890 F oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
8189 O_BomoMSG17371_internal:A_BomoMSG_c25808_g1_i2
131bp
 probable_peroxisomal_acyl-coenzyme_A_oxidase_1_[Bombyx_mori]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0003997 F acyl-CoA oxidase activity
GO:0005777 C peroxisome
GO:0006091 P generation of precursor metabolites and energy
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0006693 P prostaglandin metabolic process
GO:0008152 P metabolic process
GO:0009055 F electron transfer activity
GO:0016401 F palmitoyl-CoA oxidase activity
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0019395 P fatty acid oxidation
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0033540 P fatty acid beta-oxidation using acyl-CoA oxidase
GO:0050660 F flavin adenine dinucleotide binding
GO:0052890 F oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
8190 O_BomoMSG17372_complete:A_BomoMSG_c25809_g1_i1
300bp
 exosome_complex_component_RRP4_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000467 P exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 F RNA binding
GO:0004532 F exoribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006364 P rRNA processing
GO:0008312 F 7S RNA binding
GO:0030307 P positive regulation of cell growth
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034475 P U4 snRNA 3'-end processing
GO:0043488 P regulation of mRNA stability
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0071034 P CUT catabolic process
GO:0071035 P nuclear polyadenylation-dependent rRNA catabolic process
GO:0071038 P nuclear polyadenylation-dependent tRNA catabolic process
GO:0071049 P nuclear mRNA surveillance
GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing
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