SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8101 O_BomoMSG17292_5prime_partial:A_BomoMSG_c25784_g1_i1
172bp
 transcriptional_repressor_p66-alpha_isoform_X2_[Bombyx_mori]
8102 O_BomoMSG17293_complete:A_BomoMSG_c25784_g1_i1
159bp
8103 O_BomoMSG17294_5prime_partial:A_BomoMSG_c25784_g1_i2
172bp
 transcriptional_repressor_p66-alpha_isoform_X2_[Bombyx_mori]
8104 O_BomoMSG17295_5prime_partial:A_BomoMSG_c25784_g1_i3
129bp
 transcriptional_repressor_p66-alpha_isoform_X2_[Bombyx_mori]
8105 O_BomoMSG17296_5prime_partial:A_BomoMSG_c25784_g1_i3
111bp
8106 O_BomoMSG17297_complete:A_BomoMSG_c25785_g1_i1
265bp
 cytochrome_b561_isoform_X4_[Bombyx_mori]
GO:0000293 F ferric-chelate reductase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0022865 F obsolete transmembrane electron transfer carrier
GO:0022900 P electron transport chain
GO:0030658 C transport vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0046872 F metal ion binding
GO:0055085 P transmembrane transport
GO:0055114 P obsolete oxidation-reduction process
8107 O_BomoMSG17298_complete:A_BomoMSG_c25785_g1_i1
106bp
8108 O_BomoMSG17299_complete:A_BomoMSG_c25785_g1_i2
268bp
 cytochrome_b561_isoform_X3_[Bombyx_mori]
GO:0000293 F ferric-chelate reductase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0022865 F obsolete transmembrane electron transfer carrier
GO:0022900 P electron transport chain
GO:0030658 C transport vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0046872 F metal ion binding
GO:0055085 P transmembrane transport
GO:0055114 P obsolete oxidation-reduction process
8109 O_BomoMSG1729_internal:A_BomoMSG_c8326_g1_i1
133bp
 protein_Tob1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007292 P female gamete generation
GO:0008285 P negative regulation of cell population proliferation
GO:0010468 P regulation of gene expression
GO:0042809 F vitamin D receptor binding
GO:0045671 P negative regulation of osteoclast differentiation
GO:0045778 P positive regulation of ossification
8110 O_BomoMSG172_5prime_partial:A_BomoMSG_c704_g1_i1
118bp
8111 O_BomoMSG17300_complete:A_BomoMSG_c25785_g1_i2
106bp
8112 O_BomoMSG17301_5prime_partial:A_BomoMSG_c25786_g3_i1
731bp
 threonine--tRNA_ligase,_cytoplasmic_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004829 F threonine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006435 P threonyl-tRNA aminoacylation
GO:0015629 C actin cytoskeleton
GO:0016874 F ligase activity
GO:0016876 F aminoacyl-tRNA ligase activity
GO:0043039 P tRNA aminoacylation
GO:0070062 C extracellular exosome
8113 O_BomoMSG17302_complete:A_BomoMSG_c25786_g3_i3
332bp
 short-chain_dehydrogenase/reductase_family_16C_member_6_isoform_X1_[Bombyx_mori]
GO:0004745 F NAD-retinol dehydrogenase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0042572 P retinol metabolic process
GO:0042574 P retinal metabolic process
GO:0043616 P keratinocyte proliferation
GO:0055114 P obsolete oxidation-reduction process
8114 O_BomoMSG17303_complete:A_BomoMSG_c25786_g3_i3
178bp
8115 O_BomoMSG17304_complete:A_BomoMSG_c25786_g3_i4
332bp
 short-chain_dehydrogenase/reductase_family_16C_member_6_isoform_X1_[Bombyx_mori]
GO:0004745 F NAD-retinol dehydrogenase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0042572 P retinol metabolic process
GO:0042574 P retinal metabolic process
GO:0043616 P keratinocyte proliferation
GO:0055114 P obsolete oxidation-reduction process
8116 O_BomoMSG17305_complete:A_BomoMSG_c25786_g3_i4
178bp
8117 O_BomoMSG17306_5prime_partial:A_BomoMSG_c25787_g1_i1
238bp
 scavenger_receptor_class_B_member_3_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0005901 C caveola
GO:0006898 P receptor-mediated endocytosis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0016324 C apical plasma membrane
GO:0045056 P transcytosis
GO:0070506 F high-density lipoprotein particle receptor activity
8118 O_BomoMSG17307_5prime_partial:A_BomoMSG_c25787_g1_i2
101bp
8119 O_BomoMSG17308_complete:A_BomoMSG_c25787_g1_i3
496bp
 scavenger_receptor_class_B_member_3_[Bombyx_mori]
GO:0002433 P immune response-regulating cell surface receptor signaling pathway involved in phagocytosis
GO:0005044 F scavenger receptor activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006898 P receptor-mediated endocytosis
GO:0006909 P phagocytosis
GO:0006911 P phagocytosis, engulfment
GO:0006915 P apoptotic process
GO:0006952 P defense response
GO:0006955 P immune response
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035071 P salivary gland cell autophagic cell death
GO:0042116 P macrophage activation
GO:0048102 P autophagic cell death
GO:0050764 P regulation of phagocytosis
GO:0060099 P regulation of phagocytosis, engulfment
GO:0090382 P phagosome maturation
8120 O_BomoMSG17309_internal:A_BomoMSG_c25788_g1_i1
296bp
 venom_dipeptidyl_peptidase_4_[Bombyx_mori]
GO:0004177 F aminopeptidase activity
GO:0005576 C extracellular region
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016787 F hydrolase activity
8121 O_BomoMSG1730_3prime_partial:A_BomoMSG_c8326_g1_i1
104bp
8122 O_BomoMSG17310_3prime_partial:A_BomoMSG_c25788_g1_i2
794bp
 venom_dipeptidyl_peptidase_4_[Bombyx_mori]
GO:0004177 F aminopeptidase activity
GO:0005576 C extracellular region
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016787 F hydrolase activity
8123 O_BomoMSG17311_3prime_partial:A_BomoMSG_c25788_g1_i3
462bp
 venom_dipeptidyl_peptidase_4_[Bombyx_mori]
GO:0004177 F aminopeptidase activity
GO:0005576 C extracellular region
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016787 F hydrolase activity
8124 O_BomoMSG17312_3prime_partial:A_BomoMSG_c25790_g5_i1
162bp
 39S_ribosomal_protein_L18,_mitochondrial_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005615 C extracellular space
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005761 C mitochondrial ribosome
GO:0005840 C ribosome
GO:0006412 P translation
GO:0006810 P transport
GO:0008097 F 5S rRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0035928 P rRNA import into mitochondrion
GO:0070125 P mitochondrial translational elongation
GO:0070126 P mitochondrial translational termination
8125 O_BomoMSG17313_3prime_partial:A_BomoMSG_c25793_g1_i1
151bp
 WD_repeat-containing_protein_26_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0008150 P biological_process
8126 O_BomoMSG17314_complete:A_BomoMSG_c25793_g1_i1
101bp
8127 O_BomoMSG17315_complete:A_BomoMSG_c25794_g1_i1
377bp
 hypothetical_protein_FF38_04907_[Lucilia_cuprina]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
8128 O_BomoMSG17316_complete:A_BomoMSG_c25794_g1_i1
124bp
 hypothetical_protein_X777_16013,_partial_[Ooceraea_biroi]
8129 O_BomoMSG17317_complete:A_BomoMSG_c25794_g1_i2
377bp
 hypothetical_protein_FF38_04907_[Lucilia_cuprina]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
8130 O_BomoMSG17318_complete:A_BomoMSG_c25794_g1_i2
144bp
 hypothetical_protein_WN51_03243_[Melipona_quadrifasciata]
previous next from show/29137

- SilkBase 1999-2023 -