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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8071 O_BomoMSG17265_5prime_partial:A_BomoMSG_c25772_g1_i5
270bp
 methionine_sulfoxide_reductase_[Bombyx_mori]
GO:0000096 P sulfur amino acid metabolic process
GO:0006979 P response to oxidative stress
GO:0008113 F peptide-methionine (S)-S-oxide reductase activity
GO:0008340 P determination of adult lifespan
GO:0016491 F oxidoreductase activity
GO:0016671 F oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
GO:0030091 P protein repair
GO:0034599 P cellular response to oxidative stress
GO:0035071 P salivary gland cell autophagic cell death
GO:0048102 P autophagic cell death
GO:0048812 P neuron projection morphogenesis
GO:0055114 P obsolete oxidation-reduction process
8072 O_BomoMSG17266_complete:A_BomoMSG_c25773_g1_i1
114bp
 ER_membrane_protein_complex_subunit_6_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0003674 F molecular_function
GO:0005783 C endoplasmic reticulum
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0034975 P protein folding in endoplasmic reticulum
GO:0072546 C EMC complex
GO:0097631 C integral component of omegasome membrane
8073 O_BomoMSG17267_internal:A_BomoMSG_c25774_g1_i1
99bp
 uncharacterized_protein_CG4449_[Bombyx_mori]
8074 O_BomoMSG17268_3prime_partial:A_BomoMSG_c25774_g1_i2
354bp
 uncharacterized_protein_CG4449_[Bombyx_mori]
GO:0000724 P double-strand break repair via homologous recombination
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016925 P protein sumoylation
GO:0031386 F protein tag
GO:0034399 C nuclear periphery
8075 O_BomoMSG17269_5prime_partial:A_BomoMSG_c25775_g1_i1
266bp
 LOW_QUALITY_PROTEIN:_circadian_locomoter_output_cycles_protein_kaput_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003053 P circadian regulation of heart rate
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007622 P rhythmic behavior
GO:0007623 P circadian rhythm
GO:0008062 P eclosion rhythm
GO:0008134 F transcription factor binding
GO:0009266 P response to temperature stimulus
GO:0009649 P entrainment of circadian clock
GO:0032922 P circadian regulation of gene expression
GO:0043066 P negative regulation of apoptotic process
GO:0045187 P regulation of circadian sleep/wake cycle, sleep
GO:0045475 P locomotor rhythm
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0048148 P behavioral response to cocaine
GO:0048511 P rhythmic process
8076 O_BomoMSG1726_internal:A_BomoMSG_c8265_g1_i1
201bp
 histone-lysine_N-methyltransferase_SETD1_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000791 C euchromatin
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0032259 P methylation
GO:0035327 C euchromatin
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0044648 P histone H3-K4 dimethylation
GO:0046427 P positive regulation of receptor signaling pathway via JAK-STAT
GO:0048188 C Set1C/COMPASS complex
GO:0051568 P histone H3-K4 methylation
GO:0080182 P histone H3-K4 trimethylation
8077 O_BomoMSG17270_3prime_partial:A_BomoMSG_c25775_g1_i2
164bp
 LOW_QUALITY_PROTEIN:_circadian_locomoter_output_cycles_protein_kaput_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003053 P circadian regulation of heart rate
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007622 P rhythmic behavior
GO:0007623 P circadian rhythm
GO:0008062 P eclosion rhythm
GO:0008134 F transcription factor binding
GO:0009266 P response to temperature stimulus
GO:0009649 P entrainment of circadian clock
GO:0032922 P circadian regulation of gene expression
GO:0043066 P negative regulation of apoptotic process
GO:0045187 P regulation of circadian sleep/wake cycle, sleep
GO:0045475 P locomotor rhythm
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0048148 P behavioral response to cocaine
GO:0048511 P rhythmic process
8078 O_BomoMSG17271_internal:A_BomoMSG_c25775_g1_i3
100bp
 LOW_QUALITY_PROTEIN:_circadian_locomoter_output_cycles_protein_kaput_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003053 P circadian regulation of heart rate
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007622 P rhythmic behavior
GO:0007623 P circadian rhythm
GO:0008062 P eclosion rhythm
GO:0008134 F transcription factor binding
GO:0009266 P response to temperature stimulus
GO:0009649 P entrainment of circadian clock
GO:0032922 P circadian regulation of gene expression
GO:0043066 P negative regulation of apoptotic process
GO:0045187 P regulation of circadian sleep/wake cycle, sleep
GO:0045475 P locomotor rhythm
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0048148 P behavioral response to cocaine
GO:0048511 P rhythmic process
8079 O_BomoMSG17272_complete:A_BomoMSG_c25775_g1_i4
646bp
 LOW_QUALITY_PROTEIN:_circadian_locomoter_output_cycles_protein_kaput_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003053 P circadian regulation of heart rate
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007622 P rhythmic behavior
GO:0007623 P circadian rhythm
GO:0008062 P eclosion rhythm
GO:0008134 F transcription factor binding
GO:0009266 P response to temperature stimulus
GO:0009649 P entrainment of circadian clock
GO:0032922 P circadian regulation of gene expression
GO:0043066 P negative regulation of apoptotic process
GO:0045187 P regulation of circadian sleep/wake cycle, sleep
GO:0045475 P locomotor rhythm
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0048148 P behavioral response to cocaine
GO:0048511 P rhythmic process
8080 O_BomoMSG17273_complete:A_BomoMSG_c25775_g1_i4
263bp
8081 O_BomoMSG17274_5prime_partial:A_BomoMSG_c25775_g1_i5
384bp
 LOW_QUALITY_PROTEIN:_circadian_locomoter_output_cycles_protein_kaput_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003053 P circadian regulation of heart rate
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007622 P rhythmic behavior
GO:0007623 P circadian rhythm
GO:0008062 P eclosion rhythm
GO:0008134 F transcription factor binding
GO:0009266 P response to temperature stimulus
GO:0009649 P entrainment of circadian clock
GO:0032922 P circadian regulation of gene expression
GO:0043066 P negative regulation of apoptotic process
GO:0045187 P regulation of circadian sleep/wake cycle, sleep
GO:0045475 P locomotor rhythm
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0048148 P behavioral response to cocaine
GO:0048511 P rhythmic process
8082 O_BomoMSG17275_3prime_partial:A_BomoMSG_c25775_g1_i5
209bp
8083 O_BomoMSG17276_complete:A_BomoMSG_c25777_g1_i1
307bp
 glucose_dehydrogenase_[FAD,_quinone]_isoform_X1_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
8084 O_BomoMSG17277_5prime_partial:A_BomoMSG_c25777_g1_i2
246bp
 glucose_dehydrogenase_[FAD,_quinone]_isoform_X3_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
8085 O_BomoMSG17278_5prime_partial:A_BomoMSG_c25777_g1_i3
348bp
 glucose_dehydrogenase_[FAD,_quinone]_isoform_X3_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
8086 O_BomoMSG17279_5prime_partial:A_BomoMSG_c25777_g1_i4
379bp
 glucose_dehydrogenase_[FAD,_quinone]_isoform_X1_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
8087 O_BomoMSG1727_internal:A_BomoMSG_c8313_g1_i1
123bp
 origin_recognition_complex_subunit_4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000781 C chromosome, telomeric region
GO:0000784 C chromosome, telomeric region
GO:0000808 C origin recognition complex
GO:0003677 F DNA binding
GO:0003688 F DNA replication origin binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005664 C nuclear origin of replication recognition complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006270 P DNA replication initiation
GO:0015629 C actin cytoskeleton
8088 O_BomoMSG17280_5prime_partial:A_BomoMSG_c25778_g1_i2
354bp
 protein_mini_spindles_isoform_X2_[Helicoverpa_armigera]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000922 C spindle pole
GO:0000930 C gamma-tubulin complex
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0007049 P cell cycle
GO:0007051 P spindle organization
GO:0007062 P sister chromatid cohesion
GO:0007067 P mitotic cell cycle
GO:0015630 C microtubule cytoskeleton
GO:0016020 C membrane
GO:0030951 P establishment or maintenance of microtubule cytoskeleton polarity
GO:0035371 C microtubule plus-end
GO:0043234 C protein-containing complex
GO:0050658 P RNA transport
GO:0051297 P centrosome cycle
GO:0051301 P cell division
8089 O_BomoMSG17281_5prime_partial:A_BomoMSG_c25779_g1_i2
102bp
 uncharacterized_protein_LOC105842383_isoform_X1_[Bombyx_mori]
8090 O_BomoMSG17282_internal:A_BomoMSG_c25779_g1_i4
123bp
 uncharacterized_protein_LOC105842488_[Bombyx_mori]
8091 O_BomoMSG17283_3prime_partial:A_BomoMSG_c25780_g1_i1
181bp
 ATP-dependent_RNA_helicase_DDX54-like_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005102 F signaling receptor binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006396 P RNA processing
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016070 P RNA metabolic process
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0030331 F estrogen receptor binding
GO:0030520 P intracellular estrogen receptor signaling pathway
GO:0044822 F RNA binding
GO:1903507 P negative regulation of nucleic acid-templated transcription
8092 O_BomoMSG17284_5prime_partial:A_BomoMSG_c25780_g1_i1
125bp
 Os11g0599466_[Oryza_sativa_Japonica_Group]
8093 O_BomoMSG17285_3prime_partial:A_BomoMSG_c25781_g1_i1
306bp
 nitrilase_homolog_1_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0005575 C cellular_component
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006807 P nitrogen compound metabolic process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016810 F hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0047710 F bis(5'-adenosyl)-triphosphatase activity
8094 O_BomoMSG17286_5prime_partial:A_BomoMSG_c25781_g1_i1
108bp
8095 O_BomoMSG17287_internal:A_BomoMSG_c25781_g1_i2
211bp
 nitrilase_homolog_1_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0005575 C cellular_component
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006807 P nitrogen compound metabolic process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016810 F hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0047710 F bis(5'-adenosyl)-triphosphatase activity
8096 O_BomoMSG17288_5prime_partial:A_BomoMSG_c25781_g1_i2
108bp
8097 O_BomoMSG17289_complete:A_BomoMSG_c25782_g2_i1
100bp
8098 O_BomoMSG1728_internal:A_BomoMSG_c8322_g1_i1
206bp
 Retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
8099 O_BomoMSG17290_3prime_partial:A_BomoMSG_c25783_g1_i1
263bp
 sericin_3_precursor_[Bombyx_mori]
8100 O_BomoMSG17291_3prime_partial:A_BomoMSG_c25783_g1_i1
171bp
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