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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
7771 O_BomoMSG16996_internal:A_BomoMSG_c25693_g1_i2
140bp
 HMG_box-containing_protein_4_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001525 P angiogenesis
GO:0001568 P blood vessel development
GO:0001570 P vasculogenesis
GO:0001701 P in utero embryonic development
GO:0001942 P hair follicle development
GO:0001944 P vasculature development
GO:0001945 P lymph vessel development
GO:0001946 P lymphangiogenesis
GO:0001947 P heart looping
GO:0003151 P outflow tract morphogenesis
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007507 P heart development
GO:0022405 P hair cycle process
GO:0035050 P embryonic heart tube development
GO:0042789 P mRNA transcription by RNA polymerase II
GO:0043534 P blood vessel endothelial cell migration
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0044798 C transcription regulator complex
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0048469 P cell maturation
GO:0048866 P stem cell fate specification
GO:0060214 P endocardium formation
GO:0060836 P lymphatic endothelial cell differentiation
GO:0060956 P endocardial cell differentiation
GO:0061028 P establishment of endothelial barrier
GO:0072091 P regulation of stem cell proliferation
7772 O_BomoMSG16997_3prime_partial:A_BomoMSG_c25693_g1_i3
234bp
 HMG_box-containing_protein_4_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0008333 P endosome to lysosome transport
GO:0016055 P Wnt signaling pathway
GO:0016589 C NURF complex
GO:0030178 P negative regulation of Wnt signaling pathway
7773 O_BomoMSG16998_3prime_partial:A_BomoMSG_c25694_g1_i1
626bp
 methyltransferase-like_protein_13_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
7774 O_BomoMSG16999_complete:A_BomoMSG_c25694_g1_i1
118bp
7775 O_BomoMSG1699_internal:A_BomoMSG_c8080_g1_i1
235bp
 uncharacterized_protein_LOC101739044_[Bombyx_mori]
7776 O_BomoMSG169_internal:A_BomoMSG_c685_g1_i1
119bp
 peroxidase_[Bombyx_mori]
7777 O_BomoMSG16_5prime_partial:A_BomoMSG_c108_g1_i1
104bp
 RNA_polymerase-associated_protein_CTR9_homolog_[Bombyx_mori]
7778 O_BomoMSG17000_internal:A_BomoMSG_c25695_g1_i1
293bp
 autophagy-related_protein_2_homolog_A_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000407 C phagophore assembly site
GO:0000422 P autophagy of mitochondrion
GO:0005811 C lipid droplet
GO:0006914 P autophagy
GO:0016020 C membrane
GO:0019898 C extrinsic component of membrane
GO:0034045 C phagophore assembly site membrane
GO:0044804 P autophagy of nucleus
7779 O_BomoMSG17001_complete:A_BomoMSG_c25695_g1_i1
150bp
7780 O_BomoMSG17002_5prime_partial:A_BomoMSG_c25695_g1_i1
127bp
7781 O_BomoMSG17003_internal:A_BomoMSG_c25695_g1_i2
230bp
 autophagy-related_protein_2_homolog_A_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000407 C phagophore assembly site
GO:0000422 P autophagy of mitochondrion
GO:0005811 C lipid droplet
GO:0006914 P autophagy
GO:0016020 C membrane
GO:0019898 C extrinsic component of membrane
GO:0034045 C phagophore assembly site membrane
GO:0044804 P autophagy of nucleus
7782 O_BomoMSG17004_3prime_partial:A_BomoMSG_c25695_g1_i2
116bp
7783 O_BomoMSG17005_complete:A_BomoMSG_c25697_g1_i1
832bp
 PREDICTED:_serine/threonine-protein_kinase_MARK2_isoform_X3_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0001764 P neuron migration
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005884 C actin filament
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007275 P multicellular organism development
GO:0008289 F lipid binding
GO:0010976 P positive regulation of neuron projection development
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016328 C lateral plasma membrane
GO:0016740 F transferase activity
GO:0030010 P establishment of cell polarity
GO:0030154 P cell differentiation
GO:0035556 P intracellular signal transduction
GO:0045197 P establishment or maintenance of epithelial cell apical/basal polarity
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0050321 F tau-protein kinase activity
GO:0050770 P regulation of axonogenesis
GO:0051493 P regulation of cytoskeleton organization
GO:0097427 C microtubule bundle
7784 O_BomoMSG17006_complete:A_BomoMSG_c25697_g1_i1
111bp
7785 O_BomoMSG17007_complete:A_BomoMSG_c25697_g1_i1
107bp
7786 O_BomoMSG17008_complete:A_BomoMSG_c25697_g1_i2
954bp
 PREDICTED:_serine/threonine-protein_kinase_MARK2_isoform_X2_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0070062 C extracellular exosome
7787 O_BomoMSG17009_complete:A_BomoMSG_c25697_g1_i2
149bp
7788 O_BomoMSG1700_internal:A_BomoMSG_c8084_g1_i1
252bp
 trans-1,2-dihydrobenzene-1,2-diol_dehydrogenase_[Bombyx_mori]
GO:0016491 F oxidoreductase activity
GO:0047115 F trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity
GO:0047837 F D-xylose 1-dehydrogenase (NADP+) activity
GO:0055114 P obsolete oxidation-reduction process
7789 O_BomoMSG17010_complete:A_BomoMSG_c25697_g1_i2
111bp
7790 O_BomoMSG17011_complete:A_BomoMSG_c25697_g1_i2
107bp
7791 O_BomoMSG17012_complete:A_BomoMSG_c25697_g1_i3
978bp
 PREDICTED:_serine/threonine-protein_kinase_MARK2_isoform_X3_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0070062 C extracellular exosome
7792 O_BomoMSG17013_complete:A_BomoMSG_c25697_g1_i3
111bp
7793 O_BomoMSG17014_complete:A_BomoMSG_c25697_g1_i3
107bp
7794 O_BomoMSG17015_complete:A_BomoMSG_c25697_g1_i4
610bp
 serine/threonine-protein_kinase_MARK2_isoform_X7_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0001764 P neuron migration
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005884 C actin filament
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007275 P multicellular organism development
GO:0008289 F lipid binding
GO:0010976 P positive regulation of neuron projection development
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016328 C lateral plasma membrane
GO:0016740 F transferase activity
GO:0030010 P establishment of cell polarity
GO:0030154 P cell differentiation
GO:0035556 P intracellular signal transduction
GO:0045197 P establishment or maintenance of epithelial cell apical/basal polarity
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0050321 F tau-protein kinase activity
GO:0050770 P regulation of axonogenesis
GO:0051493 P regulation of cytoskeleton organization
GO:0097427 C microtubule bundle
7795 O_BomoMSG17016_complete:A_BomoMSG_c25697_g1_i4
111bp
7796 O_BomoMSG17017_complete:A_BomoMSG_c25697_g1_i4
107bp
7797 O_BomoMSG17018_5prime_partial:A_BomoMSG_c25697_g1_i5
187bp
 serine/threonine-protein_kinase_MARK2_isoform_X8_[Bombyx_mori]
7798 O_BomoMSG17019_complete:A_BomoMSG_c25697_g1_i5
111bp
7799 O_BomoMSG1701_5prime_partial:A_BomoMSG_c8087_g1_i1
120bp
 probable_tRNA_pseudouridine_synthase_2_[Bombyx_mori]
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0006396 P RNA processing
GO:0008033 P tRNA processing
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0016853 F isomerase activity
7800 O_BomoMSG17020_complete:A_BomoMSG_c25697_g1_i6
832bp
 PREDICTED:_serine/threonine-protein_kinase_MARK2_isoform_X3_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0001764 P neuron migration
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005884 C actin filament
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007275 P multicellular organism development
GO:0008289 F lipid binding
GO:0010976 P positive regulation of neuron projection development
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016328 C lateral plasma membrane
GO:0016740 F transferase activity
GO:0030010 P establishment of cell polarity
GO:0030154 P cell differentiation
GO:0035556 P intracellular signal transduction
GO:0045197 P establishment or maintenance of epithelial cell apical/basal polarity
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0050321 F tau-protein kinase activity
GO:0050770 P regulation of axonogenesis
GO:0051493 P regulation of cytoskeleton organization
GO:0097427 C microtubule bundle
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