SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
7711 O_BomoMSG16941_complete:A_BomoMSG_c25662_g1_i8
105bp
7712 O_BomoMSG16942_5prime_partial:A_BomoMSG_c25663_g1_i1
273bp
 serpin_5_[Bombyx_mandarina]
GO:0002020 F protease binding
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0007584 P response to nutrient
GO:0007596 P blood coagulation
GO:0007599 P hemostasis
GO:0008201 F heparin binding
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
GO:0050728 P negative regulation of inflammatory response
GO:0070062 C extracellular exosome
GO:0072562 C blood microparticle
GO:2000266 P regulation of blood coagulation, intrinsic pathway
7713 O_BomoMSG16943_5prime_partial:A_BomoMSG_c25663_g1_i2
402bp
 serpin_5_[Bombyx_mandarina]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
GO:0070062 C extracellular exosome
7714 O_BomoMSG16944_5prime_partial:A_BomoMSG_c25663_g1_i3
115bp
 serpin_5_[Bombyx_mandarina]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005539 F glycosaminoglycan binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005829 C cytosol
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007566 P embryo implantation
GO:0007596 P blood coagulation
GO:0008201 F heparin binding
GO:0008285 P negative regulation of cell population proliferation
GO:0009314 P response to radiation
GO:0009611 P response to wounding
GO:0010466 P negative regulation of peptidase activity
GO:0010544 P negative regulation of platelet activation
GO:0010757 P negative regulation of plasminogen activation
GO:0010766 P negative regulation of sodium ion transport
GO:0010951 P negative regulation of endopeptidase activity
GO:0010955 P negative regulation of protein processing
GO:0010976 P positive regulation of neuron projection development
GO:0014067 P negative regulation of phosphatidylinositol 3-kinase signaling
GO:0016020 C membrane
GO:0021683 P cerebellar granular layer morphogenesis
GO:0030154 P cell differentiation
GO:0030195 P negative regulation of blood coagulation
GO:0030308 P negative regulation of cell growth
GO:0030334 P regulation of cell migration
GO:0030414 F peptidase inhibitor activity
GO:0031012 C extracellular matrix
GO:0031091 C platelet alpha granule
GO:0031232 C extrinsic component of external side of plasma membrane
GO:0031594 C neuromuscular junction
GO:0032940 P secretion by cell
GO:0033363 P secretory granule organization
GO:0042177 P negative regulation of protein catabolic process
GO:0042628 P mating plug formation
GO:0043025 C neuronal cell body
GO:0045861 P negative regulation of proteolysis
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0048505 P regulation of timing of cell differentiation
GO:0048711 P positive regulation of astrocyte differentiation
GO:0050974 P detection of mechanical stimulus involved in sensory perception
GO:0051966 P regulation of synaptic transmission, glutamatergic
GO:0060291 P long-term synaptic potentiation
GO:0060384 P innervation
GO:0061108 P seminal vesicle epithelium development
GO:0061110 P dense core granule biogenesis
GO:0090331 P negative regulation of platelet aggregation
GO:1903561 C extracellular vesicle
7715 O_BomoMSG16945_5prime_partial:A_BomoMSG_c25663_g1_i4
404bp
 serpin_5_[Bombyx_mandarina]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
GO:0070062 C extracellular exosome
7716 O_BomoMSG16946_3prime_partial:A_BomoMSG_c25664_g1_i1
124bp
 alcohol_dehydrogenase_1_[Bombyx_mori]
GO:0004022 F alcohol dehydrogenase (NAD+) activity
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
7717 O_BomoMSG16947_internal:A_BomoMSG_c25664_g1_i2
104bp
 alcohol_dehydrogenase_1_[Bombyx_mori]
GO:0004022 F alcohol dehydrogenase (NAD+) activity
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
7718 O_BomoMSG16948_5prime_partial:A_BomoMSG_c25665_g1_i2
410bp
 inositol-trisphosphate_3-kinase_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004683 F calmodulin-dependent protein kinase activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005829 C cytosol
GO:0006020 P inositol metabolic process
GO:0006468 P protein phosphorylation
GO:0007165 P signal transduction
GO:0008440 F inositol-1,4,5-trisphosphate 3-kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030036 P actin cytoskeleton organization
GO:0043197 C dendritic spine
GO:0043647 P inositol phosphate metabolic process
GO:0048167 P regulation of synaptic plasticity
GO:0048365 F small GTPase binding
GO:0061003 P positive regulation of dendritic spine morphogenesis
GO:0097062 P dendritic spine maintenance
7719 O_BomoMSG16949_complete:A_BomoMSG_c25665_g1_i3
397bp
 inositol-trisphosphate_3-kinase_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004683 F calmodulin-dependent protein kinase activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005829 C cytosol
GO:0006020 P inositol metabolic process
GO:0006468 P protein phosphorylation
GO:0007165 P signal transduction
GO:0008440 F inositol-1,4,5-trisphosphate 3-kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030036 P actin cytoskeleton organization
GO:0043197 C dendritic spine
GO:0043647 P inositol phosphate metabolic process
GO:0048167 P regulation of synaptic plasticity
GO:0048365 F small GTPase binding
GO:0061003 P positive regulation of dendritic spine morphogenesis
GO:0097062 P dendritic spine maintenance
7720 O_BomoMSG1694_internal:A_BomoMSG_c8042_g1_i1
116bp
 uncharacterized_protein_LOC110384931_[Bombyx_mori]
7721 O_BomoMSG16950_complete:A_BomoMSG_c25666_g1_i2
124bp
 uncharacterized_protein_LOC101735549_isoform_X3_[Bombyx_mori]
7722 O_BomoMSG16951_complete:A_BomoMSG_c25667_g1_i1
105bp
7723 O_BomoMSG16952_internal:A_BomoMSG_c25668_g1_i1
103bp
 uncharacterized_protein_LOC101744973_isoform_X1_[Bombyx_mori]
7724 O_BomoMSG16953_internal:A_BomoMSG_c25668_g3_i1
101bp
 uncharacterized_protein_LOC101744973_isoform_X1_[Bombyx_mori]
7725 O_BomoMSG16954_complete:A_BomoMSG_c25670_g1_i1
325bp
 palmitoyltransferase_ZDHHC2_isoform_X6_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016409 F palmitoyltransferase activity
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0018345 P protein palmitoylation
GO:0019706 F protein-cysteine S-palmitoyltransferase activity
GO:0044267 P cellular protein metabolic process
GO:0046872 F metal ion binding
GO:0055038 C recycling endosome membrane
7726 O_BomoMSG16955_complete:A_BomoMSG_c25670_g1_i2
352bp
 palmitoyltransferase_ZDHHC2_isoform_X6_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016409 F palmitoyltransferase activity
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0018345 P protein palmitoylation
GO:0019706 F protein-cysteine S-palmitoyltransferase activity
GO:0044267 P cellular protein metabolic process
GO:0046872 F metal ion binding
GO:0055038 C recycling endosome membrane
7727 O_BomoMSG16956_5prime_partial:A_BomoMSG_c25671_g1_i1
270bp
 DDB1-_and_CUL4-associated_factor_7_[Danaus_plexippus_plexippus]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0016363 C nuclear matrix
GO:0016567 P protein ubiquitination
GO:0043234 C protein-containing complex
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
7728 O_BomoMSG16957_5prime_partial:A_BomoMSG_c25671_g1_i1
179bp
7729 O_BomoMSG16958_complete:A_BomoMSG_c25671_g1_i2
353bp
 DDB1-_and_CUL4-associated_factor_7_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0016363 C nuclear matrix
GO:0016567 P protein ubiquitination
GO:0043234 C protein-containing complex
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
7730 O_BomoMSG16959_5prime_partial:A_BomoMSG_c25671_g1_i2
179bp
7731 O_BomoMSG1695_internal:A_BomoMSG_c8043_g1_i1
158bp
 U2_small_nuclear_ribonucleoprotein_auxiliary_factor_35_kDa_subunit-related_protein_2_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0030529 C ribonucleoprotein complex
GO:0046872 F metal ion binding
GO:0089701 C U2AF complex
7732 O_BomoMSG16960_5prime_partial:A_BomoMSG_c25671_g1_i3
113bp
7733 O_BomoMSG16961_5prime_partial:A_BomoMSG_c25672_g1_i1
174bp
 uncharacterized_protein_LOC101735459_[Bombyx_mori]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000077 P DNA damage checkpoint signaling
GO:0000724 P double-strand break repair via homologous recombination
GO:0003677 F DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016787 F hydrolase activity
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
7734 O_BomoMSG16962_complete:A_BomoMSG_c25672_g1_i2
473bp
 uncharacterized_protein_LOC101735459_[Bombyx_mori]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000077 P DNA damage checkpoint signaling
GO:0000724 P double-strand break repair via homologous recombination
GO:0003677 F DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016787 F hydrolase activity
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
7735 O_BomoMSG16963_complete:A_BomoMSG_c25672_g1_i2
160bp
7736 O_BomoMSG16964_3prime_partial:A_BomoMSG_c25673_g1_i1
559bp
 adenomatous_polyposis_coli_protein_isoform_X1_[Bombyx_mori]
GO:0000281 P mitotic cytokinesis
GO:0000776 C kinetochore
GO:0001708 P cell fate specification
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005881 C cytoplasmic microtubule
GO:0005886 C plasma membrane
GO:0005912 C adherens junction
GO:0005913 C adherens junction
GO:0005938 C cell cortex
GO:0006461 P protein-containing complex assembly
GO:0006974 P cellular response to DNA damage stimulus
GO:0007026 P negative regulation of microtubule depolymerization
GO:0007050 P regulation of cell cycle
GO:0007163 P establishment or maintenance of cell polarity
GO:0007389 P pattern specification process
GO:0008013 F beta-catenin binding
GO:0008017 F microtubule binding
GO:0008283 P cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016477 P cell migration
GO:0019887 F protein kinase regulator activity
GO:0030027 C lamellipodium
GO:0030054 C cell junction
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0030425 C dendrite
GO:0030426 C growth cone
GO:0030877 C beta-catenin destruction complex
GO:0031016 P pancreas development
GO:0031175 P neuron projection development
GO:0031965 C nuclear membrane
GO:0032403 F protein-containing complex binding
GO:0032587 C ruffle membrane
GO:0032886 P regulation of microtubule-based process
GO:0042493 P response to xenobiotic stimulus
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0043065 P positive regulation of apoptotic process
GO:0043234 C protein-containing complex
GO:0044295 C axonal growth cone
GO:0044306 C neuron projection terminus
GO:0045202 C synapse
GO:0045295 F gamma-catenin binding
GO:0045595 P regulation of cell differentiation
GO:0045732 P positive regulation of protein catabolic process
GO:0045736 P negative regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0051010 F microtubule plus-end binding
GO:0070852 C cell body fiber
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:0097305 P response to alcohol
GO:1990090 P cellular response to nerve growth factor stimulus
GO:2000211 P regulation of glutamate metabolic process
7737 O_BomoMSG16965_complete:A_BomoMSG_c25674_g1_i1
335bp
 replication_factor_C_(activator_1)_5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003689 F DNA clamp loader activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005663 C DNA replication factor C complex
GO:0006260 P DNA replication
GO:0006261 P DNA-dependent DNA replication
GO:0019899 F enzyme binding
GO:0031390 C Ctf18 RFC-like complex
GO:0043142 F single-stranded DNA helicase activity
GO:1900264 P positive regulation of DNA-directed DNA polymerase activity
7738 O_BomoMSG16966_5prime_partial:A_BomoMSG_c25675_g1_i1
264bp
 YTH_domain-containing_protein_1_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016604 C nuclear body
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:1990247 F N6-methyladenosine-containing RNA binding
7739 O_BomoMSG16967_5prime_partial:A_BomoMSG_c25675_g1_i2
164bp
 YTH_domain-containing_protein_1_[Bombyx_mori]
7740 O_BomoMSG16968_5prime_partial:A_BomoMSG_c25676_g1_i3
277bp
 uncharacterized_protein_LOC101743872_[Bombyx_mori]
previous next from show/29137

- SilkBase 1999-2023 -