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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
7651 O_BomoMSG16888_complete:A_BomoMSG_c25655_g1_i2
470bp
 heterogeneous_nuclear_ribonucleoprotein_L_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0010467 P gene expression
GO:0016020 C membrane
GO:0030529 C ribonucleoprotein complex
GO:0035770 C ribonucleoprotein granule
GO:0044212 F transcription cis-regulatory region binding
GO:0044822 F RNA binding
GO:0045120 C pronucleus
GO:0070062 C extracellular exosome
GO:0097157 F pre-mRNA intronic binding
7652 O_BomoMSG16889_5prime_partial:A_BomoMSG_c25655_g1_i3
251bp
 heterogeneous_nuclear_ribonucleoprotein_L_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0010467 P gene expression
GO:0016020 C membrane
GO:0030529 C ribonucleoprotein complex
GO:0035770 C ribonucleoprotein granule
GO:0044212 F transcription cis-regulatory region binding
GO:0044822 F RNA binding
GO:0045120 C pronucleus
GO:0070062 C extracellular exosome
GO:0097157 F pre-mRNA intronic binding
7653 O_BomoMSG1688_internal:A_BomoMSG_c8008_g1_i1
183bp
 neuroligin-4,_X-linked_[Bombyx_mori]
GO:0002087 P regulation of respiratory gaseous exchange by nervous system process
GO:0004872 F signaling receptor activity
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006898 P receptor-mediated endocytosis
GO:0007155 P cell adhesion
GO:0007158 P neuron cell-cell adhesion
GO:0007416 P synapse assembly
GO:0007612 P learning
GO:0008542 P visual learning
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030139 C endocytic vesicle
GO:0030425 C dendrite
GO:0030534 P adult behavior
GO:0035176 P social behavior
GO:0042043 F neurexin family protein binding
GO:0043025 C neuronal cell body
GO:0045202 C synapse
GO:0048675 P axon extension
GO:0048709 P oligodendrocyte differentiation
GO:0050804 P modulation of chemical synaptic transmission
GO:0050808 P synapse organization
GO:0050839 F cell adhesion molecule binding
GO:0051965 P positive regulation of synapse assembly
GO:0051966 P regulation of synaptic transmission, glutamatergic
GO:0051968 P positive regulation of synaptic transmission, glutamatergic
GO:0052689 F carboxylic ester hydrolase activity
GO:0060024 P rhythmic synaptic transmission
GO:0060076 C excitatory synapse
GO:0060077 C inhibitory synapse
GO:0060079 P excitatory postsynaptic potential
GO:0060080 P inhibitory postsynaptic potential
GO:0060291 P long-term synaptic potentiation
GO:0060999 P positive regulation of dendritic spine development
GO:0061001 P regulation of dendritic spine morphogenesis
GO:0061002 P negative regulation of dendritic spine morphogenesis
GO:0071625 P vocalization behavior
GO:0090394 P negative regulation of excitatory postsynaptic potential
GO:0097104 P postsynaptic membrane assembly
GO:0097105 P presynaptic membrane assembly
GO:0097110 F scaffold protein binding
GO:0097151 P positive regulation of inhibitory postsynaptic potential
GO:0098794 C postsynapse
GO:1900271 P regulation of long-term synaptic potentiation
GO:1902474 P positive regulation of protein localization to synapse
GO:2000310 P regulation of NMDA receptor activity
GO:2000311 P regulation of AMPA receptor activity
GO:2000331 P regulation of terminal button organization
GO:2000463 P positive regulation of excitatory postsynaptic potential
GO:2000809 P positive regulation of synaptic vesicle clustering
GO:2000969 P positive regulation of AMPA receptor activity
7654 O_BomoMSG16890_5prime_partial:A_BomoMSG_c25655_g1_i3
106bp
7655 O_BomoMSG16891_complete:A_BomoMSG_c25655_g1_i4
471bp
 heterogeneous_nuclear_ribonucleoprotein_L_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0010467 P gene expression
GO:0016020 C membrane
GO:0030529 C ribonucleoprotein complex
GO:0035770 C ribonucleoprotein granule
GO:0044212 F transcription cis-regulatory region binding
GO:0044822 F RNA binding
GO:0045120 C pronucleus
GO:0070062 C extracellular exosome
GO:0097157 F pre-mRNA intronic binding
7656 O_BomoMSG16892_5prime_partial:A_BomoMSG_c25655_g1_i4
106bp
7657 O_BomoMSG16893_3prime_partial:A_BomoMSG_c25656_g1_i1
184bp
 U11/U12_small_nuclear_ribonucleoprotein_35_kDa_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005689 C U12-type spliceosomal complex
GO:0017069 F snRNA binding
GO:0071011 C precatalytic spliceosome
7658 O_BomoMSG16894_5prime_partial:A_BomoMSG_c25656_g1_i1
101bp
7659 O_BomoMSG16895_complete:A_BomoMSG_c25657_g1_i1
198bp
 PREDICTED:_low-density_lipoprotein_receptor_class_A_domain-containing_protein_4_isoform_X2_[Amyelois_transitella]
7660 O_BomoMSG16896_complete:A_BomoMSG_c25657_g1_i1
144bp
7661 O_BomoMSG16897_complete:A_BomoMSG_c25657_g1_i1
124bp
7662 O_BomoMSG16898_complete:A_BomoMSG_c25657_g1_i2
204bp
 PREDICTED:_low-density_lipoprotein_receptor_class_A_domain-containing_protein_4_isoform_X1_[Amyelois_transitella]
7663 O_BomoMSG16899_complete:A_BomoMSG_c25657_g1_i2
144bp
7664 O_BomoMSG1689_3prime_partial:A_BomoMSG_c8015_g1_i1
197bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_KIAA1109_[Bombyx_mori]
7665 O_BomoMSG168_internal:A_BomoMSG_c672_g1_i1
119bp
 phosphofurin_acidic_cluster_sorting_protein_1-like_[Helicoverpa_armigera]
GO:0005794 C Golgi apparatus
GO:0032092 P positive regulation of protein binding
GO:0034613 P cellular protein localization
GO:0044325 F transmembrane transporter binding
GO:0048471 C perinuclear region of cytoplasm
GO:0072661 P protein localization to plasma membrane
7666 O_BomoMSG16900_complete:A_BomoMSG_c25657_g1_i2
124bp
7667 O_BomoMSG16901_complete:A_BomoMSG_c25658_g1_i1
178bp
 uncharacterized_protein_LOC101737869_[Bombyx_mori]
7668 O_BomoMSG16902_5prime_partial:A_BomoMSG_c25658_g1_i2
220bp
 uncharacterized_protein_LOC101737869_[Bombyx_mori]
7669 O_BomoMSG16903_internal:A_BomoMSG_c25659_g1_i1
343bp
 tyrosine--tRNA_ligase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004831 F tyrosine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006437 P tyrosyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0043039 P tRNA aminoacylation
GO:0070184 P mitochondrial tyrosyl-tRNA aminoacylation
7670 O_BomoMSG16904_3prime_partial:A_BomoMSG_c25659_g1_i2
142bp
 tyrosine--tRNA_ligase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004831 F tyrosine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006437 P tyrosyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0043039 P tRNA aminoacylation
GO:0070184 P mitochondrial tyrosyl-tRNA aminoacylation
7671 O_BomoMSG16905_3prime_partial:A_BomoMSG_c25659_g1_i3
457bp
 tyrosine--tRNA_ligase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004831 F tyrosine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006437 P tyrosyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0043039 P tRNA aminoacylation
GO:0070184 P mitochondrial tyrosyl-tRNA aminoacylation
7672 O_BomoMSG16906_internal:A_BomoMSG_c25659_g1_i4
364bp
 tyrosine--tRNA_ligase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004831 F tyrosine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006437 P tyrosyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0043039 P tRNA aminoacylation
GO:0070184 P mitochondrial tyrosyl-tRNA aminoacylation
7673 O_BomoMSG16907_complete:A_BomoMSG_c25659_g1_i5
252bp
 tyrosine--tRNA_ligase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004831 F tyrosine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006437 P tyrosyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0043039 P tRNA aminoacylation
GO:0070184 P mitochondrial tyrosyl-tRNA aminoacylation
7674 O_BomoMSG16908_3prime_partial:A_BomoMSG_c25659_g1_i5
142bp
 tyrosine--tRNA_ligase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004831 F tyrosine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006437 P tyrosyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0043039 P tRNA aminoacylation
GO:0070184 P mitochondrial tyrosyl-tRNA aminoacylation
7675 O_BomoMSG16909_internal:A_BomoMSG_c25659_g1_i6
309bp
 tyrosine--tRNA_ligase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004831 F tyrosine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006437 P tyrosyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0043039 P tRNA aminoacylation
GO:0070184 P mitochondrial tyrosyl-tRNA aminoacylation
7676 O_BomoMSG1690_3prime_partial:A_BomoMSG_c8017_g1_i1
125bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
7677 O_BomoMSG16910_internal:A_BomoMSG_c25659_g1_i7
228bp
 tyrosine--tRNA_ligase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004831 F tyrosine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006437 P tyrosyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0043039 P tRNA aminoacylation
GO:0070184 P mitochondrial tyrosyl-tRNA aminoacylation
7678 O_BomoMSG16911_5prime_partial:A_BomoMSG_c25660_g1_i2
308bp
 Zinc_finger_MYM-type_protein_4_[Papilio_xuthus]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007010 P cytoskeleton organization
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0022604 P regulation of cell morphogenesis
GO:0046872 F metal ion binding
7679 O_BomoMSG16912_5prime_partial:A_BomoMSG_c25660_g1_i3
262bp
 PREDICTED:_glutamine-rich_protein_1-like_[Papilio_machaon]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007010 P cytoskeleton organization
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0022604 P regulation of cell morphogenesis
GO:0046872 F metal ion binding
7680 O_BomoMSG16913_5prime_partial:A_BomoMSG_c25660_g1_i4
112bp
 putative_WOC_protein_[Danaus_plexippus_plexippus]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007010 P cytoskeleton organization
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0022604 P regulation of cell morphogenesis
GO:0046872 F metal ion binding
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