SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
7111 O_BomoMSG16400_complete:A_BomoMSG_c25481_g1_i1
101bp
 hypothetical_protein_AX774_g2910_[Zancudomyces_culisetae]
7112 O_BomoMSG16401_5prime_partial:A_BomoMSG_c25482_g1_i2
118bp
 single-stranded_DNA-binding_protein,_partial_[Bombyx_mori]
7113 O_BomoMSG16402_5prime_partial:A_BomoMSG_c25483_g1_i2
358bp
 cytoplasmic_protein_NCK1_[Bombyx_mori]
GO:0000164 C protein phosphatase type 1 complex
GO:0004860 F protein kinase inhibitor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005802 C trans-Golgi network
GO:0005840 C ribosome
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0006417 P regulation of translation
GO:0006469 P negative regulation of protein kinase activity
GO:0006930 P substrate-dependent cell migration, cell extension
GO:0007015 P actin filament organization
GO:0010976 P positive regulation of neuron projection development
GO:0012506 C vesicle membrane
GO:0016192 P vesicle-mediated transport
GO:0016477 P cell migration
GO:0019904 F protein domain specific binding
GO:0030032 P lamellipodium assembly
GO:0030334 P regulation of cell migration
GO:0030838 P positive regulation of actin filament polymerization
GO:0030971 F receptor tyrosine kinase binding
GO:0033137 P negative regulation of peptidyl-serine phosphorylation
GO:0036493 P positive regulation of translation in response to endoplasmic reticulum stress
GO:0042102 P positive regulation of T cell proliferation
GO:0042110 P T cell activation
GO:0043547 P positive regulation of GTPase activity
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046875 F ephrin receptor binding
GO:0048013 P ephrin receptor signaling pathway
GO:0051707 P response to other organism
GO:0060548 P negative regulation of cell death
GO:0070262 P peptidyl-serine dephosphorylation
GO:0071074 F eukaryotic initiation factor eIF2 binding
GO:1902237 P positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway
GO:1903676 P positive regulation of cap-dependent translational initiation
GO:1903679 P positive regulation of cap-independent translational initiation
GO:1903898 P negative regulation of PERK-mediated unfolded protein response
GO:1903912 P negative regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation
GO:1904030 P negative regulation of cyclin-dependent protein kinase activity
GO:1990441 P negative regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress
7114 O_BomoMSG16403_complete:A_BomoMSG_c25483_g1_i2
221bp
7115 O_BomoMSG16404_5prime_partial:A_BomoMSG_c25484_g1_i1
376bp
 DNA_primase_small_subunit_[Bombyx_mori]
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003896 F DNA primase activity
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005658 C alpha DNA polymerase:primase complex
GO:0006260 P DNA replication
GO:0006269 P DNA replication, synthesis of RNA primer
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0022008 P neurogenesis
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:1990077 C primosome complex
7116 O_BomoMSG16405_5prime_partial:A_BomoMSG_c25484_g1_i2
401bp
 DNA_primase_small_subunit_[Bombyx_mori]
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003896 F DNA primase activity
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005658 C alpha DNA polymerase:primase complex
GO:0006260 P DNA replication
GO:0006269 P DNA replication, synthesis of RNA primer
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0022008 P neurogenesis
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:1990077 C primosome complex
7117 O_BomoMSG16406_5prime_partial:A_BomoMSG_c25484_g1_i3
170bp
 DNA_primase_small_subunit_[Bombyx_mori]
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003896 F DNA primase activity
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005658 C alpha DNA polymerase:primase complex
GO:0006260 P DNA replication
GO:0006269 P DNA replication, synthesis of RNA primer
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0022008 P neurogenesis
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:1990077 C primosome complex
7118 O_BomoMSG16407_complete:A_BomoMSG_c25484_g1_i4
399bp
 DNA_primase_small_subunit_[Bombyx_mori]
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003896 F DNA primase activity
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005658 C alpha DNA polymerase:primase complex
GO:0006260 P DNA replication
GO:0006269 P DNA replication, synthesis of RNA primer
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0022008 P neurogenesis
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:1990077 C primosome complex
7119 O_BomoMSG16408_complete:A_BomoMSG_c25484_g1_i5
214bp
 DNA_primase_small_subunit_[Bombyx_mori]
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003896 F DNA primase activity
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005658 C alpha DNA polymerase:primase complex
GO:0006260 P DNA replication
GO:0006269 P DNA replication, synthesis of RNA primer
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0022008 P neurogenesis
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:1990077 C primosome complex
7120 O_BomoMSG16409_internal:A_BomoMSG_c25485_g1_i1
419bp
 F-box_only_protein_42_[Bombyx_mori]
GO:0005515 F protein binding
7121 O_BomoMSG1640_3prime_partial:A_BomoMSG_c7860_g1_i1
144bp
 exportin-4_[Bombyx_mori]
GO:0005049 F nuclear export signal receptor activity
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005737 C cytoplasm
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0008536 F small GTPase binding
GO:0015031 P protein transport
7122 O_BomoMSG16410_complete:A_BomoMSG_c25485_g1_i1
123bp
7123 O_BomoMSG16411_3prime_partial:A_BomoMSG_c25486_g1_i1
498bp
 exportin-6_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
7124 O_BomoMSG16412_3prime_partial:A_BomoMSG_c25487_g1_i1
137bp
 titin_isoform_X3_[Bombyx_mori]
7125 O_BomoMSG16413_internal:A_BomoMSG_c25487_g1_i2
109bp
 titin_isoform_X3_[Bombyx_mori]
7126 O_BomoMSG16414_internal:A_BomoMSG_c25487_g2_i1
188bp
 titin_isoform_X3_[Bombyx_mori]
7127 O_BomoMSG16415_5prime_partial:A_BomoMSG_c25487_g2_i1
142bp
7128 O_BomoMSG16416_internal:A_BomoMSG_c25487_g1_i3
298bp
 titin_isoform_X3_[Bombyx_mori]
7129 O_BomoMSG16417_internal:A_BomoMSG_c25488_g2_i1
345bp
 regucalcin_[Bombyx_mori]
GO:0004341 F gluconolactonase activity
GO:0005509 F calcium ion binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0019853 P L-ascorbic acid biosynthetic process
GO:0030234 F enzyme regulator activity
GO:0046872 F metal ion binding
GO:0050790 P regulation of catalytic activity
7130 O_BomoMSG16418_complete:A_BomoMSG_c25488_g2_i1
107bp
7131 O_BomoMSG16419_internal:A_BomoMSG_c25490_g1_i1
145bp
 WAS/WASL-interacting_protein_family_member_1_isoform_X1_[Bombyx_mori]
7132 O_BomoMSG1641_internal:A_BomoMSG_c7862_g1_i1
125bp
 structural_maintenance_of_chromosomes_protein_5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000722 P telomere maintenance via recombination
GO:0000724 P double-strand break repair via homologous recombination
GO:0000781 C chromosome, telomeric region
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016605 C PML body
GO:0030915 C Smc5-Smc6 complex
GO:0034184 P positive regulation of maintenance of mitotic sister chromatid cohesion
GO:0045842 P positive regulation of mitotic metaphase/anaphase transition
GO:0051301 P cell division
GO:0090398 P cellular senescence
7133 O_BomoMSG16420_3prime_partial:A_BomoMSG_c25490_g1_i2
325bp
 WAS/WASL-interacting_protein_family_member_1_isoform_X1_[Bombyx_mori]
7134 O_BomoMSG16421_complete:A_BomoMSG_c25490_g1_i2
194bp
7135 O_BomoMSG16422_complete:A_BomoMSG_c25491_g1_i1
114bp
7136 O_BomoMSG16423_complete:A_BomoMSG_c25492_g1_i1
276bp
 PREDICTED:_thyrotroph_embryonic_factor_isoform_X8_[Papilio_machaon]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0035914 P skeletal muscle cell differentiation
GO:0043565 F sequence-specific DNA binding
GO:0048511 P rhythmic process
7137 O_BomoMSG16424_complete:A_BomoMSG_c25492_g1_i1
188bp
7138 O_BomoMSG16425_complete:A_BomoMSG_c25492_g1_i2
276bp
 PREDICTED:_thyrotroph_embryonic_factor_isoform_X8_[Papilio_machaon]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0035914 P skeletal muscle cell differentiation
GO:0043565 F sequence-specific DNA binding
GO:0048511 P rhythmic process
7139 O_BomoMSG16426_complete:A_BomoMSG_c25492_g1_i2
188bp
7140 O_BomoMSG16427_5prime_partial:A_BomoMSG_c25492_g1_i3
279bp
 hepatic_leukemia_factor_isoform_X6_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0035914 P skeletal muscle cell differentiation
GO:0043565 F sequence-specific DNA binding
GO:0048511 P rhythmic process
previous next from show/29137

- SilkBase 1999-2023 -