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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6631 O_BomoMSG1596_5prime_partial:A_BomoMSG_c7778_g1_i1
106bp
6632 O_BomoMSG15970_3prime_partial:A_BomoMSG_c25352_g1_i2
234bp
 apoptosis-inducing_factor_1,_mitochondrial_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0006915 P apoptotic process
GO:0010623 P programmed cell death involved in cell development
GO:0016491 F oxidoreductase activity
GO:0042775 P mitochondrial ATP synthesis coupled electron transport
GO:0045454 P cell redox homeostasis
GO:0046983 F protein dimerization activity
GO:0050660 F flavin adenine dinucleotide binding
GO:0050832 P defense response to fungus
GO:0055114 P obsolete oxidation-reduction process
6633 O_BomoMSG15971_5prime_partial:A_BomoMSG_c25352_g1_i2
149bp
6634 O_BomoMSG15972_complete:A_BomoMSG_c25352_g1_i2
101bp
6635 O_BomoMSG15973_3prime_partial:A_BomoMSG_c25354_g1_i1
243bp
 thymidylate_synthase_isoform_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003729 F mRNA binding
GO:0004799 F thymidylate synthase activity
GO:0005542 F folic acid binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0006206 P pyrimidine nucleobase metabolic process
GO:0006231 P dTMP biosynthetic process
GO:0006235 P dTTP biosynthetic process
GO:0007568 P aging
GO:0007623 P circadian rhythm
GO:0008144 F obsolete drug binding
GO:0008168 F methyltransferase activity
GO:0009165 P nucleotide biosynthetic process
GO:0009636 P response to toxic substance
GO:0014070 P response to organic cyclic compound
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0019088 P transformation of host cell by virus
GO:0019860 P uracil metabolic process
GO:0031100 P animal organ regeneration
GO:0032259 P methylation
GO:0032570 P response to progesterone
GO:0033189 P response to vitamin A
GO:0034097 P response to cytokine
GO:0035999 P tetrahydrofolate interconversion
GO:0042493 P response to xenobiotic stimulus
GO:0042803 F protein homodimerization activity
GO:0045471 P response to ethanol
GO:0046078 P dUMP metabolic process
GO:0046653 P tetrahydrofolate metabolic process
GO:0046683 P response to organophosphorus
GO:0048037 F obsolete cofactor binding
GO:0048589 P developmental growth
GO:0051216 P cartilage development
GO:0051384 P response to glucocorticoid
GO:0051593 P response to folic acid
GO:0060574 P intestinal epithelial cell maturation
6636 O_BomoMSG15974_3prime_partial:A_BomoMSG_c25354_g1_i3
288bp
 thymidylate_synthase_isoform_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003729 F mRNA binding
GO:0004799 F thymidylate synthase activity
GO:0005542 F folic acid binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0006206 P pyrimidine nucleobase metabolic process
GO:0006231 P dTMP biosynthetic process
GO:0006235 P dTTP biosynthetic process
GO:0007568 P aging
GO:0007623 P circadian rhythm
GO:0008144 F obsolete drug binding
GO:0008168 F methyltransferase activity
GO:0009165 P nucleotide biosynthetic process
GO:0009636 P response to toxic substance
GO:0014070 P response to organic cyclic compound
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0019088 P transformation of host cell by virus
GO:0019860 P uracil metabolic process
GO:0031100 P animal organ regeneration
GO:0032259 P methylation
GO:0032570 P response to progesterone
GO:0033189 P response to vitamin A
GO:0034097 P response to cytokine
GO:0035999 P tetrahydrofolate interconversion
GO:0042493 P response to xenobiotic stimulus
GO:0042803 F protein homodimerization activity
GO:0045471 P response to ethanol
GO:0046078 P dUMP metabolic process
GO:0046653 P tetrahydrofolate metabolic process
GO:0046683 P response to organophosphorus
GO:0048037 F obsolete cofactor binding
GO:0048589 P developmental growth
GO:0051216 P cartilage development
GO:0051384 P response to glucocorticoid
GO:0051593 P response to folic acid
GO:0060574 P intestinal epithelial cell maturation
6637 O_BomoMSG15975_complete:A_BomoMSG_c25355_g1_i1
336bp
 UDP-xylose_and_UDP-N-acetylglucosamine_transporter_[Bombyx_mori]
GO:0005456 F CMP-N-acetylneuraminate transmembrane transporter activity
GO:0005457 F GDP-fucose transmembrane transporter activity
GO:0005458 F GDP-mannose transmembrane transporter activity
GO:0005460 F UDP-glucose transmembrane transporter activity
GO:0005461 F UDP-glucuronic acid transmembrane transporter activity
GO:0005462 F UDP-N-acetylglucosamine transmembrane transporter activity
GO:0005464 F UDP-xylose transmembrane transporter activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015012 P heparan sulfate proteoglycan biosynthetic process
GO:0015782 P CMP-N-acetylneuraminate transmembrane transport
GO:0015783 P GDP-fucose transmembrane transport
GO:0015784 P GDP-mannose transmembrane transport
GO:0015786 P UDP-glucose transmembrane transport
GO:0015787 P UDP-glucuronic acid transmembrane transport
GO:0015788 P UDP-N-acetylglucosamine transmembrane transport
GO:0015790 P UDP-xylose transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030173 C integral component of Golgi membrane
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0036066 P protein O-linked fucosylation
GO:0036084 P GDP-fucose import into endoplasmic reticulum lumen
GO:0055085 P transmembrane transport
GO:1990569 P UDP-N-acetylglucosamine transmembrane transport
6638 O_BomoMSG15976_complete:A_BomoMSG_c25355_g2_i1
613bp
 nose_resistant_to_fluoxetine_protein_6_[Bombyx_mori]
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0007275 P multicellular organism development
GO:0008152 P metabolic process
GO:0008289 F lipid binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016747 F acyltransferase activity, transferring groups other than amino-acyl groups
6639 O_BomoMSG15977_3prime_partial:A_BomoMSG_c25356_g1_i1
233bp
 zinc_finger_CCCH-type_with_G_patch_domain-containing_protein_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
6640 O_BomoMSG15978_5prime_partial:A_BomoMSG_c25356_g2_i1
161bp
 zinc_finger_CCCH-type_with_G_patch_domain-containing_protein_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
6641 O_BomoMSG15979_3prime_partial:A_BomoMSG_c25356_g1_i2
415bp
 zinc_finger_CCCH-type_with_G_patch_domain-containing_protein_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
6642 O_BomoMSG1597_internal:A_BomoMSG_c7782_g1_i1
222bp
 zinc_finger_protein_729_[Bombyx_mori]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0030154 P cell differentiation
GO:0046872 F metal ion binding
6643 O_BomoMSG15980_3prime_partial:A_BomoMSG_c25357_g1_i1
195bp
 UPF0598_protein_CG30010_[Bombyx_mori]
6644 O_BomoMSG15981_complete:A_BomoMSG_c25358_g1_i1
537bp
 oocyte_zinc_finger_protein_XlCOF6_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
6645 O_BomoMSG15982_5prime_partial:A_BomoMSG_c25358_g1_i2
491bp
 oocyte_zinc_finger_protein_XlCOF6_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
6646 O_BomoMSG15983_internal:A_BomoMSG_c25359_g8_i1
124bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
6647 O_BomoMSG15984_internal:A_BomoMSG_c25359_g8_i1
123bp
 Uncharacterised_protein_[Streptococcus_pneumoniae]
6648 O_BomoMSG15985_internal:A_BomoMSG_c25360_g1_i1
349bp
 ATP-binding_cassette_sub-family_C_member_Sur_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0006810 P transport
GO:0006813 P potassium ion transport
GO:0007165 P signal transduction
GO:0008152 P metabolic process
GO:0008281 F sulfonylurea receptor activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0055085 P transmembrane transport
6649 O_BomoMSG15986_internal:A_BomoMSG_c25360_g1_i2
648bp
 ATP-binding_cassette_sub-family_C_member_Sur_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005267 F potassium channel activity
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006813 P potassium ion transport
GO:0007165 P signal transduction
GO:0008076 C voltage-gated potassium channel complex
GO:0008152 P metabolic process
GO:0008281 F sulfonylurea receptor activity
GO:0008282 C inward rectifying potassium channel
GO:0010107 P potassium ion import across plasma membrane
GO:0015459 F potassium channel regulator activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0030017 C sarcomere
GO:0042383 C sarcolemma
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0043225 F ATPase-coupled inorganic anion transmembrane transporter activity
GO:0044325 F transmembrane transporter binding
GO:0051607 P defense response to virus
GO:0055085 P transmembrane transport
GO:0071805 P potassium ion transmembrane transport
GO:0098656 P anion transmembrane transport
GO:1903779 P regulation of cardiac conduction
6650 O_BomoMSG15987_internal:A_BomoMSG_c25360_g1_i3
804bp
 ATP-binding_cassette_sub-family_C_member_Sur_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0006810 P transport
GO:0006813 P potassium ion transport
GO:0007165 P signal transduction
GO:0008152 P metabolic process
GO:0008281 F sulfonylurea receptor activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0055085 P transmembrane transport
6651 O_BomoMSG15988_5prime_partial:A_BomoMSG_c25360_g1_i3
100bp
6652 O_BomoMSG15989_3prime_partial:A_BomoMSG_c25361_g1_i1
352bp
 pantothenate_kinase_4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004594 F pantothenate kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0015937 P coenzyme A biosynthetic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
6653 O_BomoMSG1598_5prime_partial:A_BomoMSG_c7782_g1_i1
105bp
6654 O_BomoMSG15990_3prime_partial:A_BomoMSG_c25361_g1_i2
352bp
 pantothenate_kinase_4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004594 F pantothenate kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0015937 P coenzyme A biosynthetic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
6655 O_BomoMSG15991_3prime_partial:A_BomoMSG_c25362_g1_i1
242bp
 protein_muscleblind_isoform_X6_[Bombyx_mori]
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0001654 P eye development
GO:0001751 P compound eye photoreceptor cell differentiation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006915 P apoptotic process
GO:0007275 P multicellular organism development
GO:0007422 P peripheral nervous system development
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007517 P muscle organ development
GO:0007525 P somatic muscle development
GO:0007601 P visual perception
GO:0009790 P embryo development
GO:0010468 P regulation of gene expression
GO:0030018 C Z disc
GO:0031673 C H zone
GO:0042052 P rhabdomere development
GO:0045924 P regulation of female receptivity
GO:0046716 P muscle cell cellular homeostasis
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0050896 P response to stimulus
6656 O_BomoMSG15992_internal:A_BomoMSG_c25362_g1_i3
173bp
 PREDICTED:_protein_muscleblind_isoform_X4_[Papilio_machaon]
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0001654 P eye development
GO:0001751 P compound eye photoreceptor cell differentiation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006915 P apoptotic process
GO:0007275 P multicellular organism development
GO:0007422 P peripheral nervous system development
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007517 P muscle organ development
GO:0007525 P somatic muscle development
GO:0007601 P visual perception
GO:0009790 P embryo development
GO:0010468 P regulation of gene expression
GO:0030018 C Z disc
GO:0031673 C H zone
GO:0042052 P rhabdomere development
GO:0045924 P regulation of female receptivity
GO:0046716 P muscle cell cellular homeostasis
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0050896 P response to stimulus
6657 O_BomoMSG15993_5prime_partial:A_BomoMSG_c25362_g1_i3
102bp
6658 O_BomoMSG15994_5prime_partial:A_BomoMSG_c25362_g1_i3
100bp
6659 O_BomoMSG15995_3prime_partial:A_BomoMSG_c25362_g1_i4
297bp
 protein_muscleblind_isoform_X4_[Bombyx_mori]
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0001654 P eye development
GO:0001751 P compound eye photoreceptor cell differentiation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006915 P apoptotic process
GO:0007275 P multicellular organism development
GO:0007422 P peripheral nervous system development
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007517 P muscle organ development
GO:0007525 P somatic muscle development
GO:0007601 P visual perception
GO:0009790 P embryo development
GO:0010468 P regulation of gene expression
GO:0030018 C Z disc
GO:0031673 C H zone
GO:0042052 P rhabdomere development
GO:0045924 P regulation of female receptivity
GO:0046716 P muscle cell cellular homeostasis
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0050896 P response to stimulus
6660 O_BomoMSG15996_5prime_partial:A_BomoMSG_c25362_g1_i4
102bp
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