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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6601 O_BomoMSG15942_internal:A_BomoMSG_c25341_g1_i2
347bp
 uncharacterized_protein_LOC101737831_[Bombyx_mori]
6602 O_BomoMSG15943_internal:A_BomoMSG_c25341_g1_i2
347bp
6603 O_BomoMSG15944_complete:A_BomoMSG_c25343_g1_i1
223bp
 glycosaminoglycan_xylosylkinase_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0005524 F ATP binding
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0046872 F metal ion binding
6604 O_BomoMSG15945_complete:A_BomoMSG_c25343_g1_i1
210bp
 glycosaminoglycan_xylosylkinase_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0005524 F ATP binding
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0046872 F metal ion binding
6605 O_BomoMSG15946_5prime_partial:A_BomoMSG_c25343_g1_i2
218bp
 glycosaminoglycan_xylosylkinase_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0005524 F ATP binding
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0046872 F metal ion binding
6606 O_BomoMSG15947_complete:A_BomoMSG_c25343_g1_i3
423bp
 glycosaminoglycan_xylosylkinase_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0005524 F ATP binding
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0046872 F metal ion binding
6607 O_BomoMSG15948_complete:A_BomoMSG_c25344_g1_i1
349bp
 regulation_of_nuclear_pre-mRNA_domain-containing_protein_1B_isoform_X1_[Bombyx_mori]
GO:0000993 F RNA polymerase II complex binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008284 P positive regulation of cell population proliferation
GO:0010564 P regulation of cell cycle process
GO:0016591 C RNA polymerase II, holoenzyme
GO:0042795 P snRNA transcription by RNA polymerase II
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0070940 P dephosphorylation of RNA polymerase II C-terminal domain
6608 O_BomoMSG15949_internal:A_BomoMSG_c25346_g1_i1
124bp
 dynactin_subunit_4_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005868 C cytoplasmic dynein complex
GO:0005869 C dynactin complex
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0007097 P nuclear migration
GO:0019886 P antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0047485 F protein N-terminus binding
6609 O_BomoMSG1594_complete:A_BomoMSG_c7769_g1_i1
117bp
 uncharacterized_protein_LOC101746156_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0008137 F NADH dehydrogenase (ubiquinone) activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
6610 O_BomoMSG15950_3prime_partial:A_BomoMSG_c25346_g1_i2
369bp
 dynactin_subunit_4_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005868 C cytoplasmic dynein complex
GO:0005869 C dynactin complex
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0007097 P nuclear migration
GO:0019886 P antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0047485 F protein N-terminus binding
6611 O_BomoMSG15951_internal:A_BomoMSG_c25346_g1_i3
351bp
 dynactin_subunit_4_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005868 C cytoplasmic dynein complex
GO:0005869 C dynactin complex
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0007097 P nuclear migration
GO:0019886 P antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0047485 F protein N-terminus binding
6612 O_BomoMSG15952_internal:A_BomoMSG_c25346_g1_i4
196bp
 dynactin_subunit_4_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005868 C cytoplasmic dynein complex
GO:0005869 C dynactin complex
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0007097 P nuclear migration
GO:0019886 P antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0047485 F protein N-terminus binding
6613 O_BomoMSG15953_5prime_partial:A_BomoMSG_c25347_g1_i1
310bp
 zinc_finger_protein_708_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070895 P negative regulation of transposon integration
6614 O_BomoMSG15954_complete:A_BomoMSG_c25347_g1_i2
561bp
 zinc_finger_protein_708_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070895 P negative regulation of transposon integration
6615 O_BomoMSG15955_complete:A_BomoMSG_c25348_g1_i2
320bp
 epidermal_retinal_dehydrogenase_[Bombyx_mori]
GO:0004745 F NAD-retinol dehydrogenase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0042572 P retinol metabolic process
GO:0042574 P retinal metabolic process
GO:0043616 P keratinocyte proliferation
GO:0050908 P detection of light stimulus involved in visual perception
GO:0055114 P obsolete oxidation-reduction process
6616 O_BomoMSG15956_3prime_partial:A_BomoMSG_c25349_g1_i1
377bp
 4-hydroxyphenylpyruvate_dioxygenase_[Bombyx_mori]
GO:0003868 F 4-hydroxyphenylpyruvate dioxygenase activity
GO:0006559 P L-phenylalanine catabolic process
GO:0006572 P tyrosine catabolic process
GO:0009072 P aromatic amino acid family metabolic process
GO:0016491 F oxidoreductase activity
GO:0016701 F oxidoreductase activity, acting on single donors with incorporation of molecular oxygen
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
6617 O_BomoMSG15957_complete:A_BomoMSG_c25349_g1_i1
107bp
6618 O_BomoMSG15958_internal:A_BomoMSG_c25349_g1_i2
296bp
 4-hydroxyphenylpyruvate_dioxygenase_[Bombyx_mori]
GO:0003868 F 4-hydroxyphenylpyruvate dioxygenase activity
GO:0005829 C cytosol
GO:0006559 P L-phenylalanine catabolic process
GO:0006572 P tyrosine catabolic process
GO:0009072 P aromatic amino acid family metabolic process
GO:0016491 F oxidoreductase activity
GO:0016701 F oxidoreductase activity, acting on single donors with incorporation of molecular oxygen
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
6619 O_BomoMSG15959_5prime_partial:A_BomoMSG_c25351_g1_i1
313bp
 E3_ubiquitin-protein_ligase_RNF126_[Bombyx_mori]
GO:0005154 F epidermal growth factor receptor binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006513 P protein monoubiquitination
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:0042127 P regulation of cell population proliferation
GO:0042147 P retrograde transport, endosome to Golgi
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043162 P ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
GO:0070936 P protein K48-linked ubiquitination
GO:0071629 P cytoplasm protein quality control by the ubiquitin-proteasome system
6620 O_BomoMSG1595_internal:A_BomoMSG_c7778_g1_i1
215bp
 dmX-like_protein_2_[Bombyx_mori]
6621 O_BomoMSG15960_complete:A_BomoMSG_c25351_g1_i1
157bp
 Os02g0248400_[Oryza_sativa_Japonica_Group]
6622 O_BomoMSG15961_complete:A_BomoMSG_c25351_g1_i1
111bp
6623 O_BomoMSG15962_complete:A_BomoMSG_c25351_g1_i2
327bp
 E3_ubiquitin-protein_ligase_RNF126_[Bombyx_mori]
GO:0005154 F epidermal growth factor receptor binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006513 P protein monoubiquitination
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:0042127 P regulation of cell population proliferation
GO:0042147 P retrograde transport, endosome to Golgi
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043162 P ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
GO:0070936 P protein K48-linked ubiquitination
GO:0071629 P cytoplasm protein quality control by the ubiquitin-proteasome system
6624 O_BomoMSG15963_complete:A_BomoMSG_c25351_g1_i2
157bp
 Os02g0248400_[Oryza_sativa_Japonica_Group]
6625 O_BomoMSG15964_complete:A_BomoMSG_c25351_g1_i2
111bp
6626 O_BomoMSG15965_5prime_partial:A_BomoMSG_c25351_g1_i3
179bp
 E3_ubiquitin-protein_ligase_RNF126_[Bombyx_mori]
GO:0005154 F epidermal growth factor receptor binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006513 P protein monoubiquitination
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:0042127 P regulation of cell population proliferation
GO:0042147 P retrograde transport, endosome to Golgi
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043162 P ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
GO:0070936 P protein K48-linked ubiquitination
GO:0071629 P cytoplasm protein quality control by the ubiquitin-proteasome system
6627 O_BomoMSG15966_complete:A_BomoMSG_c25351_g1_i3
157bp
 Os02g0248400_[Oryza_sativa_Japonica_Group]
6628 O_BomoMSG15967_complete:A_BomoMSG_c25351_g1_i3
111bp
6629 O_BomoMSG15968_internal:A_BomoMSG_c25352_g1_i1
121bp
 apoptosis-inducing_factor_1,_mitochondrial_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0006915 P apoptotic process
GO:0010623 P programmed cell death involved in cell development
GO:0016491 F oxidoreductase activity
GO:0042775 P mitochondrial ATP synthesis coupled electron transport
GO:0045454 P cell redox homeostasis
GO:0046983 F protein dimerization activity
GO:0050660 F flavin adenine dinucleotide binding
GO:0050832 P defense response to fungus
GO:0055114 P obsolete oxidation-reduction process
6630 O_BomoMSG15969_internal:A_BomoMSG_c25352_g1_i1
121bp
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