SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6541 O_BomoMSG15889_complete:A_BomoMSG_c25316_g8_i5
367bp
 3-hydroxyisobutyryl-CoA_hydrolase,_mitochondrial_[Bombyx_mori]
GO:0003860 F 3-hydroxyisobutyryl-CoA hydrolase activity
GO:0005739 C mitochondrion
GO:0006574 P valine catabolic process
GO:0009083 P branched-chain amino acid catabolic process
GO:0016787 F hydrolase activity
GO:0016836 F hydro-lyase activity
6542 O_BomoMSG1588_3prime_partial:A_BomoMSG_c7746_g1_i1
109bp
6543 O_BomoMSG15890_5prime_partial:A_BomoMSG_c25317_g1_i1
496bp
 LOW_QUALITY_PROTEIN:_BRCA1-associated_RING_domain_protein_1-like_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031436 C BRCA1-BARD1 complex
GO:0042325 P regulation of phosphorylation
GO:0042803 F protein homodimerization activity
GO:0043065 P positive regulation of apoptotic process
GO:0043066 P negative regulation of apoptotic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0046826 P negative regulation of protein export from nucleus
GO:0046872 F metal ion binding
GO:0046982 F protein heterodimerization activity
GO:0070531 C BRCA1-A complex
GO:0085020 P protein K6-linked ubiquitination
6544 O_BomoMSG15891_complete:A_BomoMSG_c25318_g1_i1
625bp
 polypeptide_N-acetylgalactosaminyltransferase_5_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0004653 F polypeptide N-acetylgalactosaminyltransferase activity
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0006486 P protein glycosylation
GO:0009312 P oligosaccharide biosynthetic process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030246 F carbohydrate binding
GO:0046872 F metal ion binding
6545 O_BomoMSG15892_complete:A_BomoMSG_c25318_g1_i2
625bp
 polypeptide_N-acetylgalactosaminyltransferase_5_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0004653 F polypeptide N-acetylgalactosaminyltransferase activity
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0006486 P protein glycosylation
GO:0009312 P oligosaccharide biosynthetic process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030246 F carbohydrate binding
GO:0046872 F metal ion binding
6546 O_BomoMSG15893_complete:A_BomoMSG_c25318_g1_i3
110bp
 polypeptide_N-acetylgalactosaminyltransferase_5_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0004653 F polypeptide N-acetylgalactosaminyltransferase activity
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0006486 P protein glycosylation
GO:0009312 P oligosaccharide biosynthetic process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030246 F carbohydrate binding
GO:0046872 F metal ion binding
6547 O_BomoMSG15894_complete:A_BomoMSG_c25318_g1_i4
625bp
 polypeptide_N-acetylgalactosaminyltransferase_5_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0004653 F polypeptide N-acetylgalactosaminyltransferase activity
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0006486 P protein glycosylation
GO:0009312 P oligosaccharide biosynthetic process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030246 F carbohydrate binding
GO:0046872 F metal ion binding
6548 O_BomoMSG15895_complete:A_BomoMSG_c25320_g1_i1
518bp
 putative_oxidoreductase_GLYR1_homolog_isoform_X2_[Bombyx_mori]
GO:0004616 F phosphogluconate dehydrogenase (decarboxylating) activity
GO:0016491 F oxidoreductase activity
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
6549 O_BomoMSG15896_5prime_partial:A_BomoMSG_c25320_g1_i1
235bp
 hypothetical_protein_RR48_02485_[Papilio_machaon]
6550 O_BomoMSG15897_complete:A_BomoMSG_c25320_g1_i1
205bp
6551 O_BomoMSG15898_complete:A_BomoMSG_c25320_g1_i2
525bp
 putative_oxidoreductase_GLYR1_homolog_isoform_X2_[Bombyx_mori]
GO:0004616 F phosphogluconate dehydrogenase (decarboxylating) activity
GO:0016491 F oxidoreductase activity
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
6552 O_BomoMSG15899_5prime_partial:A_BomoMSG_c25320_g1_i2
235bp
 hypothetical_protein_RR48_02485_[Papilio_machaon]
6553 O_BomoMSG1589_complete:A_BomoMSG_c7746_g1_i1
104bp
6554 O_BomoMSG158_internal:A_BomoMSG_c620_g1_i1
197bp
 serine/threonine-protein_kinase_fused_[Bombyx_mori]
6555 O_BomoMSG15900_complete:A_BomoMSG_c25320_g1_i2
212bp
6556 O_BomoMSG15901_complete:A_BomoMSG_c25321_g1_i2
1036bp
 lysosomal_alpha-mannosidase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004559 F alpha-mannosidase activity
GO:0005764 C lysosome
GO:0005975 P carbohydrate metabolic process
GO:0006013 P mannose metabolic process
GO:0006517 P protein deglycosylation
GO:0007611 P learning or memory
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0015923 F mannosidase activity
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0030246 F carbohydrate binding
GO:0046872 F metal ion binding
6557 O_BomoMSG15902_complete:A_BomoMSG_c25321_g1_i2
118bp
6558 O_BomoMSG15903_complete:A_BomoMSG_c25321_g1_i3
1036bp
 lysosomal_alpha-mannosidase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004559 F alpha-mannosidase activity
GO:0005764 C lysosome
GO:0005975 P carbohydrate metabolic process
GO:0006013 P mannose metabolic process
GO:0006517 P protein deglycosylation
GO:0007611 P learning or memory
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0015923 F mannosidase activity
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0030246 F carbohydrate binding
GO:0046872 F metal ion binding
6559 O_BomoMSG15904_complete:A_BomoMSG_c25321_g1_i3
118bp
6560 O_BomoMSG15905_complete:A_BomoMSG_c25322_g1_i1
212bp
 uridine_diphosphate_glucose_pyrophosphatase_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008768 F UDP-sugar diphosphatase activity
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0018279 P protein N-linked glycosylation via asparagine
GO:0046872 F metal ion binding
GO:0047631 F ADP-ribose diphosphatase activity
GO:0070062 C extracellular exosome
6561 O_BomoMSG15906_5prime_partial:A_BomoMSG_c25324_g1_i1
332bp
 RNA-binding_protein_41_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005689 C U12-type spliceosomal complex
GO:0030626 F U12 snRNA binding
GO:0032502 P developmental process
GO:0097157 F pre-mRNA intronic binding
6562 O_BomoMSG15907_complete:A_BomoMSG_c25324_g1_i2
371bp
 RNA-binding_protein_41_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005689 C U12-type spliceosomal complex
GO:0030626 F U12 snRNA binding
GO:0032502 P developmental process
GO:0097157 F pre-mRNA intronic binding
6563 O_BomoMSG15908_complete:A_BomoMSG_c25324_g1_i3
245bp
 RNA-binding_protein_41_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005689 C U12-type spliceosomal complex
GO:0030626 F U12 snRNA binding
GO:0032502 P developmental process
GO:0097157 F pre-mRNA intronic binding
6564 O_BomoMSG15909_3prime_partial:A_BomoMSG_c25325_g1_i1
124bp
6565 O_BomoMSG1590_internal:A_BomoMSG_c7750_g1_i1
122bp
 midasin_isoform_X1_[Bombyx_mori]
GO:0000027 P ribosomal large subunit assembly
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006461 P protein-containing complex assembly
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016887 F ATP hydrolysis activity
GO:0045111 C intermediate filament cytoskeleton
GO:0051082 F unfolded protein binding
6566 O_BomoMSG15910_5prime_partial:A_BomoMSG_c25325_g1_i1
110bp
 shootin-1_[Bombyx_mori]
6567 O_BomoMSG15911_complete:A_BomoMSG_c25328_g1_i1
102bp
 complex_III_assembly_factor_LYRM7_isoform_X1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
6568 O_BomoMSG15912_complete:A_BomoMSG_c25328_g1_i2
120bp
 complex_III_assembly_factor_LYRM7_isoform_X1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
6569 O_BomoMSG15913_internal:A_BomoMSG_c25329_g1_i1
216bp
 shootin-1_[Bombyx_mori]
6570 O_BomoMSG15914_3prime_partial:A_BomoMSG_c25329_g1_i2
295bp
 shootin-1_[Bombyx_mori]
previous next from show/29137

- SilkBase 1999-2023 -