SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/29137
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6451 O_BomoMSG15807_5prime_partial:A_BomoMSG_c25277_g1_i1
102bp
6452 O_BomoMSG15808_complete:A_BomoMSG_c25277_g1_i2
354bp
 mRNA_export_protein_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0071407 P cellular response to organic cyclic compound
6453 O_BomoMSG15809_5prime_partial:A_BomoMSG_c25277_g1_i2
235bp
6454 O_BomoMSG1580_internal:A_BomoMSG_c7724_g1_i1
122bp
 anaphase-promoting_complex_subunit_5_isoform_X2_[Bombyx_mori]
6455 O_BomoMSG15810_complete:A_BomoMSG_c25277_g1_i2
103bp
6456 O_BomoMSG15811_5prime_partial:A_BomoMSG_c25277_g1_i2
102bp
6457 O_BomoMSG15812_3prime_partial:A_BomoMSG_c25279_g1_i1
366bp
 dynamin_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000281 P mitotic cytokinesis
GO:0001661 P conditioned taste aversion
GO:0001738 P morphogenesis of a polarized epithelium
GO:0003777 F microtubule motor activity
GO:0003779 F actin binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005886 C plasma membrane
GO:0006897 P endocytosis
GO:0006898 P receptor-mediated endocytosis
GO:0007017 P microtubule-based process
GO:0007291 P sperm individualization
GO:0007293 P germarium-derived egg chamber formation
GO:0007298 P border follicle cell migration
GO:0007349 P cellularization
GO:0007424 P open tracheal system development
GO:0007427 P epithelial cell migration, open tracheal system
GO:0007435 P salivary gland morphogenesis
GO:0007612 P learning
GO:0007613 P memory
GO:0007614 P short-term memory
GO:0007637 P proboscis extension reflex
GO:0008017 F microtubule binding
GO:0008152 P metabolic process
GO:0008355 P olfactory learning
GO:0009408 P response to heat
GO:0016185 P synaptic vesicle budding from presynaptic endocytic zone membrane
GO:0016192 P vesicle-mediated transport
GO:0016787 F hydrolase activity
GO:0030198 P extracellular matrix organization
GO:0030536 P larval feeding behavior
GO:0030707 P ovarian follicle cell development
GO:0030866 P cortical actin cytoskeleton organization
GO:0032956 P regulation of actin cytoskeleton organization
GO:0032970 P regulation of actin filament-based process
GO:0034334 P adherens junction maintenance
GO:0035152 P regulation of tube architecture, open tracheal system
GO:0035186 P syncytial blastoderm mitotic cell cycle
GO:0036465 P synaptic vesicle recycling
GO:0040008 P regulation of growth
GO:0045202 C synapse
GO:0045747 P positive regulation of Notch signaling pathway
GO:0046667 P compound eye retinal cell programmed cell death
GO:0046843 P dorsal appendage formation
GO:0048172 P regulation of short-term neuronal synaptic plasticity
GO:0048488 P synaptic vesicle endocytosis
GO:0048489 P synaptic vesicle transport
GO:0048499 P synaptic vesicle membrane organization
GO:0050803 P regulation of synapse structure or activity
GO:0060429 P epithelium development
GO:0070864 C sperm individualization complex
GO:0072583 P clathrin-dependent endocytosis
GO:0072659 P protein localization to plasma membrane
GO:0072686 C mitotic spindle
GO:0090148 P membrane fission
GO:0098793 C presynapse
GO:1903475 P mitotic actomyosin contractile ring assembly
6458 O_BomoMSG15813_complete:A_BomoMSG_c25279_g1_i1
102bp
6459 O_BomoMSG15814_complete:A_BomoMSG_c25280_g1_i1
323bp
 probable_protein_phosphatase_2C_T23F11.1_isoform_X2_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0006470 P protein dephosphorylation
GO:0016787 F hydrolase activity
GO:0030517 P negative regulation of axon extension
GO:0031625 F ubiquitin protein ligase binding
GO:0043169 F cation binding
GO:0046872 F metal ion binding
GO:0048786 C presynaptic active zone
GO:0051965 P positive regulation of synapse assembly
6460 O_BomoMSG15815_complete:A_BomoMSG_c25280_g1_i1
106bp
6461 O_BomoMSG15816_3prime_partial:A_BomoMSG_c25280_g1_i2
324bp
 probable_protein_phosphatase_2C_T23F11.1_isoform_X1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0006470 P protein dephosphorylation
GO:0016787 F hydrolase activity
GO:0030517 P negative regulation of axon extension
GO:0031625 F ubiquitin protein ligase binding
GO:0043169 F cation binding
GO:0046872 F metal ion binding
GO:0048786 C presynaptic active zone
GO:0051965 P positive regulation of synapse assembly
6462 O_BomoMSG15817_5prime_partial:A_BomoMSG_c25280_g1_i2
111bp
6463 O_BomoMSG15818_complete:A_BomoMSG_c25280_g1_i2
106bp
6464 O_BomoMSG15819_5prime_partial:A_BomoMSG_c25280_g1_i3
328bp
 probable_protein_phosphatase_2C_T23F11.1_isoform_X2_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0006470 P protein dephosphorylation
GO:0016787 F hydrolase activity
GO:0030517 P negative regulation of axon extension
GO:0031625 F ubiquitin protein ligase binding
GO:0043169 F cation binding
GO:0046872 F metal ion binding
GO:0048786 C presynaptic active zone
GO:0051965 P positive regulation of synapse assembly
6465 O_BomoMSG1581_3prime_partial:A_BomoMSG_c7726_g1_i1
102bp
6466 O_BomoMSG15820_complete:A_BomoMSG_c25280_g1_i3
106bp
6467 O_BomoMSG15821_5prime_partial:A_BomoMSG_c25280_g1_i4
212bp
 probable_protein_phosphatase_2C_T23F11.1_isoform_X2_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0006470 P protein dephosphorylation
GO:0016787 F hydrolase activity
GO:0030517 P negative regulation of axon extension
GO:0031625 F ubiquitin protein ligase binding
GO:0043169 F cation binding
GO:0046872 F metal ion binding
GO:0048786 C presynaptic active zone
GO:0051965 P positive regulation of synapse assembly
6468 O_BomoMSG15822_internal:A_BomoMSG_c25282_g1_i1
265bp
 zinc_finger_protein_235_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
6469 O_BomoMSG15823_complete:A_BomoMSG_c25282_g1_i1
165bp
6470 O_BomoMSG15824_3prime_partial:A_BomoMSG_c25282_g1_i2
406bp
 zinc_finger_protein_235_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
6471 O_BomoMSG15825_complete:A_BomoMSG_c25282_g1_i2
165bp
6472 O_BomoMSG15826_5prime_partial:A_BomoMSG_c25283_g1_i1
148bp
 facilitated_trehalose_transporter_Tret1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0015574 F trehalose transmembrane transporter activity
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
6473 O_BomoMSG15827_internal:A_BomoMSG_c25283_g2_i2
153bp
 facilitated_trehalose_transporter_Tret1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015767 P lactose transport
GO:0015768 P maltose transport
GO:0015770 P sucrose transport
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
6474 O_BomoMSG15828_3prime_partial:A_BomoMSG_c25283_g2_i3
328bp
 facilitated_trehalose_transporter_Tret1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015767 P lactose transport
GO:0015768 P maltose transport
GO:0015770 P sucrose transport
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
6475 O_BomoMSG15829_complete:A_BomoMSG_c25284_g1_i1
109bp
6476 O_BomoMSG1582_complete:A_BomoMSG_c7739_g1_i1
216bp
 ELL_complex_EAP30_subunit_[Bombyx_mori]
GO:0000814 C ESCRT II complex
GO:0005737 C cytoplasm
GO:0006810 P transport
GO:0015031 P protein transport
GO:0043328 P protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
6477 O_BomoMSG15830_3prime_partial:A_BomoMSG_c25284_g1_i2
113bp
6478 O_BomoMSG15831_complete:A_BomoMSG_c25284_g1_i4
109bp
6479 O_BomoMSG15832_5prime_partial:A_BomoMSG_c25285_g1_i1
379bp
 LOW_QUALITY_PROTEIN:_calcium-transporting_ATPase_type_2C_member_1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0004871 F obsolete signal transducer activity
GO:0005388 F P-type calcium transporter activity
GO:0005509 F calcium ion binding
GO:0005524 F ATP binding
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0006828 P manganese ion transport
GO:0006874 P cellular calcium ion homeostasis
GO:0007165 P signal transduction
GO:0008152 P metabolic process
GO:0008544 P epidermis development
GO:0015410 F ABC-type manganese transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016339 P calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0016787 F hydrolase activity
GO:0030026 P cellular manganese ion homeostasis
GO:0030145 F manganese ion binding
GO:0031532 P actin cytoskeleton reorganization
GO:0032468 P Golgi calcium ion homeostasis
GO:0032472 P Golgi calcium ion transport
GO:0034220 P ion transmembrane transport
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0046872 F metal ion binding
GO:0070588 P calcium ion transmembrane transport
GO:0071421 P manganese ion transmembrane transport
6480 O_BomoMSG15833_complete:A_BomoMSG_c25285_g1_i1
147bp
 hypothetical_protein_AYI68_g7248_[Smittium_mucronatum]
previous next from show/29137

- SilkBase 1999-2023 -